MSTRG.1298.1.p1 (mRNA) -

Overview
NameMSTRG.1298.1.p1
Unique NameMSTRG.1298.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1409171..1410411-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1298.1.p1 ID=MSTRG.1298.1.p1|Name=MSTRG.1298.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1241bp|location=Sequence derived from alignment at sc0000006_pilon:1409171..1410411- (Clytia hemisphaerica_ch_hm2_pilon)
ATCAAAATCAATGTTGGAGTAAGCAAGAAAGTCGATGGTTGAAGAATATT
CACGATGAAGGCTTTTCTTTTTCATTTGGTTTTGCTTCAGTTGACGGTGC
TATTGTGCTATGGTAAGCAGAATTTCTCTATCCCAAGAGAATAATTGTAC
GGGAGGAGGAATATGGGGTCCTTTCTTTACTTGCTACTTTGACTATTTAA
ATTTCTTGAAACCTGCACGAGCTTTATACACTGAAAGATCTTCTGCAATT
CTGCATTGAAAAATTACAAATAAGTTTCGAAAAAGTTACCATTTAATTTG
ACCTTGGTATTTAAACTGTCATAACTTTGCCTTTGCCACTTTTCATCCAC
TTCCTCAAATCACAACTTCAAACTTTAATGTCAGAATAAAGCCTCTAATC
AAAGAAAGTATGACATCTCATTTTATTCAGCTGGTGAGGAGGCTTGCACA
ATCCCTGTCTTGAGCGTGGACCATGCATTTGGCGAAAAAGTTACCGGTCA
ATATTTCAACTTCAATAGAGAACACATGTCTTGTTTGACACCTGGTAAAC
AAATCCAATTCTTAGCTTACAATCCTCGAACTTCCACCATCGGTGAAGTG
GTGGTATGGGGCGGTAGGAATGGCGGTTCTGTGGGTGACTCTCATGGAAG
ATTCAATTATCTGAATGTAAGGCCTGCACCAGGACAATGGCAAAGAGGAG
ATACAGTGGTACCAATTGACTGTTCCCATGAAAATACAGGTAGAATTCGA
TTTCATATTTTCATCATGAGAAACCATAAAACAAGAAATTCCTTTTTTCA
GATACTTCTACATTTTAAAACATTTTCGAACTTTCAACCATTAATCATCA
GCCTTTAAATATCATTAATAACCGCTATCCACTTTCAGTAAAACGATGCA
GTATTCCGATCGTGAGCGTTGATCACAAATCCGGTAAAACTGGACAATAT
TTCAATTTCGATCGAAAATACATCAAAGAACTCTCAAACAACGGAAACTT
GACGTTTCAAGCATACAACCTCCGCACAGGACAGATCGGAGAAGTCATTG
TTTGGGGTTCGGCCAATGGTGGAACCACTGGAGATTCTCATGGCAGATTC
AACAGTAACAAAGTCGCTCCTATGCCTGGTCAGTGGCGAAAAGGTGATCG
TCTTTACCCTGTCGACCAAGCTCTGTGTTTGTAAATCAAAATTTCTCTCT
AAACTATTTTCATAAGAATAAAAAAAGAAACAATTCTGAAA

Coding sequence (CDS) from alignment at sc0000006_pilon:1409171..1410411-

>MSTRG.1298.1.p1 ID=MSTRG.1298.1.p1|Name=MSTRG.1298.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1989bp|location=Sequence derived from alignment at sc0000006_pilon:1409171..1410411- (Clytia hemisphaerica_ch_hm2_pilon)
TAAAACGATGCAGTATTCCGATCGTGAGCGTTGATCACAAATCCGGTAAA
ACTGGACAATATTTCAATTTCGATCGAAAATACATCAAAGAACTCTCAAA
CAACGGAAACTTGACGTTTCAAGCATACAACCTCCGCACAGGACAGATCG
GAGAAGTCATTGTTTGGGGTTCGGCCAATGGTGGAACCACTGGAGATTCT
CATGGCAGATTCAACAGTAACAAAGTCGCTCCTATGCCTGGTCAGTGGCG
AAAAGGTGATCGTCTTTACCCTGTCGACCAAGCTCTGTGTTTGTAACTGG
TGAGGAGGCTTGCACAATCCCTGTCTTGAGCGTGGACCATGCATTTGGCG
AAAAAGTTACCGGTCAATATTTCAACTTCAATAGAGAACACATGTCTTGT
TTGACACCTGGTAAACAAATCCAATTCTTAGCTTACAATCCTCGAACTTC
CACCATCGGTGAAGTGGTGGTATGGGGCGGTAGGAATGGCGGTTCTGTGG
GTGACTCTCATGGAAGATTCAATTATCTGAATGTAAGGCCTGCACCAGGA
CAATGGCAAAGAGGAGATACAGTGGTACCAATTGACTGTTCCCATGAAAA
TACAGATGAAGGCTTTTCTTTTTCATTTGGTTTTGCTTCAGTTGACGGTG
CTATTGTGCTATGTAAAACGATGCAGTATTCCGATCGTGAGCGTTGATCA
CAAATCCGGTAAAACTGGACAATATTTCAATTTCGATCGAAAATACATCA
AAGAACTCTCAAACAACGGAAACTTGACGTTTCAAGCATACAACCTCCGC
ACAGGACAGATCGGAGAAGTCATTGTTTGGGGTTCGGCCAATGGTGGAAC
CACTGGAGATTCTCATGGCAGATTCAACAGTAACAAAGTCGCTCCTATGC
CTGGTCAGTGGCGAAAAGGTGATCGTCTTTACCCTGTCGACCAAGCTCTG
TGTTTGTAACTGGTGAGGAGGCTTGCACAATCCCTGTCTTGAGCGTGGAC
CATGCATTTGGCGAAAAAGTTACCGGTCAATATTTCAACTTCAATAGAGA
ACACATGTCTTGTTTGACACCTGGTAAACAAATCCAATTCTTAGCTTACA
ATCCTCGAACTTCCACCATCGGTGAAGTGGTGGTATGGGGCGGTAGGAAT
GGCGGTTCTGTGGGTGACTCTCATGGAAGATTCAATTATCTGAATGTAAG
GCCTGCACCAGGACAATGGCAAAGAGGAGATACAGTGGTACCAATTGACT
GTTCCCATGAAAATACAGATGAAGGCTTTTCTTTTTCATTTGGTTTTGCT
TCAGTTGACGGTGCTATTGTGCTATGTAAAACGATGCAGTATTCCGATCG
TGAGCGTTGATCACAAATCCGGTAAAACTGGACAATATTTCAATTTCGAT
CGAAAATACATCAAAGAACTCTCAAACAACGGAAACTTGACGTTTCAAGC
ATACAACCTCCGCACAGGACAGATCGGAGAAGTCATTGTTTGGGGTTCGG
CCAATGGTGGAACCACTGGAGATTCTCATGGCAGATTCAACAGTAACAAA
GTCGCTCCTATGCCTGGTCAGTGGCGAAAAGGTGATCGTCTTTACCCTGT
CGACCAAGCTCTGTGTTTGTAACTGGTGAGGAGGCTTGCACAATCCCTGT
CTTGAGCGTGGACCATGCATTTGGCGAAAAAGTTACCGGTCAATATTTCA
ACTTCAATAGAGAACACATGTCTTGTTTGACACCTGGTAAACAAATCCAA
TTCTTAGCTTACAATCCTCGAACTTCCACCATCGGTGAAGTGGTGGTATG
GGGCGGTAGGAATGGCGGTTCTGTGGGTGACTCTCATGGAAGATTCAATT
ATCTGAATGTAAGGCCTGCACCAGGACAATGGCAAAGAGGAGATACAGTG
GTACCAATTGACTGTTCCCATGAAAATACAGATGAAGGCTTTTCTTTTTC
ATTTGGTTTTGCTTCAGTTGACGGTGCTATTGTGCTATG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1298MSTRG.1298Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1298.1.p1MSTRG.1298.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1298.1.p1.exon3MSTRG.1298.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1298.1.p1.exon2MSTRG.1298.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1298.1.p1.exon1MSTRG.1298.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1409171..1410411 -