MSTRG.12970.1.p1 (mRNA) -

Overview
NameMSTRG.12970.1.p1
Unique NameMSTRG.12970.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:1007264..1010063+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12970.1.p1 ID=MSTRG.12970.1.p1|Name=MSTRG.12970.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2800bp|location=Sequence derived from alignment at sc0000100_pilon:1007264..1010063+ (Clytia hemisphaerica_ch_hm2_pilon)
GCATTGTAGAGAAAATAGTAGAAAATATCcgaaatacatttttttctata
aCGTTATTTAAAGATATCAGATGAAGGAAATCAGTCATGCACCTTTATCT
TTTATTGAGCAAGTTTGTGTTTGTTTATTCTCAATGGTACGTGGgcgaag
aaaaacaacaaacattAACGAGTATTGTTACAGAGGATGCTTCAAAACCT
GTTCCTGCACAATCCCCAATTCAATGTGTTTTAAAATGTCGaaggaaaca
gaaaaaaagtttttttgttaaagCGAAAAACGAATGTTTTTGCGTGGAGG
AAGAAAACAGAGGATTTGGAACAGACCAAGAATCATCGATTGAAGGAATG
CTCTACAAAGAACACATGGTAAATTAAATAAGGTGTCctgattgggcttt
tccagaaaaaaattgaatatggaggTGAAGGATATaacgttttttgaaaa
tttacctcCCGGACACTGTTaattttgaccccccggacGAGCATCAGTCg
accccccggacattcaaaattgctcccaaaacaaggcaaattttgcagag
ttgtcactaccccccggacaaaatatccaatatattctccaaccccccat
gtacaaaagAGCCCATTAAGGTTTCATTCCcaaaacttttgatttcttaT
CCTCTTACGAGCTATTTTGCTAATTATCATGGATAAGATAATTCAGAGCA
AAATGATGATCCTGGAAAGGCTCGTGGAATAAGAATAGAACAAGGAAGAT
CAATAATTTGTATAAACATCAAATTAAGGTTAAAGATGCAGCCCCCTGGT
ATTGTAATGACACATTCTAAAAAAGTCGGAAATAGATTTTTGATTGATGG
AATCTAGACTATACTTAAAAGTTTGGCCAAAGAGGTCGCTGAAAATAAGT
CAAAATTCCAGGGGTTCTAAAAAAGTCCTCGACAtccttatttctatttt
tttaaggAATGCTTCGCAACTTCATGCAAAGAACTCAAAAAGATTTGTCC
AGATTGCGAGTCAAGGATTTACACGTTGGACTTTGATGAACCGACGAAGG
TGTTTTGTGATATGGAGACTGACGGGGGTaagaataaaaaactaaaatac
tacgtgtcattaaagagaacaattaaaatcacgtgtcaaaaacaaacttg
taaaaaaattgaaacaatcgaAATCCGCCATGGGatgccatatttgtttt
tattttttatatattttgattttgtatcccgctgcatacggtttgtttac
aaatttcgtcagtacttttgtGTCCCTTTAAGGGGATGCACAgttattat
ttatttaaaaaaagtttcacaCGAGATGCTTAAAATACACATAAATACAT
TCATTTCCACTTGATACATATCAAAAATCATGTCagtattaatttttgag
ttcctTATAACATCATACACTTTTGTAGTCAGTTTCACCCATTTGTTAAG
CCTTAAAACACTTTttcagtccccccttaaaatgaaattttgccctTGAa
gaaagccccccccccttaaatggaacaaaaattacaaaaatccccccttt
ttcaaaaggcaatttttttactccccccttattttaaggggggggggggg
gggggggtgtcagAAACCATGTTCAATGTTAAATCTCACCGAAATTAATA
CCTGTAAAATAGCAATCAATCATTATTTGACCGAATTCTTGCCCACAGGA
GGTTGGTTGGCTATAGGCAAAATCATCTTTGATGACGTGAGTCTCCAATC
ATACCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCTTC
AAAACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAACT
CTACAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAACC
TGGGCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAATGT
CTTATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTGCA
TCACGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGTCA
ACACACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACCGT
TCTACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATGAT
TATTCCGGCACCTTAGGAACTTGGGAATTTTATCTTCGTTAAATTGAAGC
ACCACCATCAATGATGATACTTACAATCTTGTTACGAAACTCGTACAGAG
GCAGGTTTCCTCAAATCTAAAGCTTGACCTCAGAATGAATAAAAGGAATG
CGTAGCCTGTTTCAATTTAAAGTACATGGACATATACACAAGTTTGATAA
CACTGATATGTCTTTCCTTCGTTTTTCGAGTAAAGACACACAGATAGCGT
AACGTTCACTCAGCCTGTTCGGTAAAATACACCCCTCTAAAACGCAAAGA
CGGGGTAACTCTTGAACGGGACTTTTATTCACGACACTTATCCCAAAAAC
AATTATCCTAtatcaaaaacaatttaaaacctTAGAAAACTGGTTTGAAA
CGACTACTATGCTGTGAGTCCTGGTAAATTTCAGGAAATCGGAAGATTTG
TAAGAAATGTAACAATGAAATCTCAGAATTATGCTGTGCTTTCTTGGTAA
TACGATTGACAATAACTATATGTCATGTAGTTTAGGAAAAGTAAACTCAA
CATTATATGTCCATTAGAAAAGTCTTCATGTTTTTCTTCTTgggttttca
ttttaatttcaaaaacatggaatttaagattttaaagccTTCGAATCATC

Coding sequence (CDS) from alignment at sc0000100_pilon:1007264..1010063+

>MSTRG.12970.1.p1 ID=MSTRG.12970.1.p1|Name=MSTRG.12970.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2691bp|location=Sequence derived from alignment at sc0000100_pilon:1007264..1010063+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCACCTTTATCTTTTATTGAGCAAGTTTGTGTTTGTTTATTCTCAATG
GTACGTGGgcgaagaaaaacaacaaacattAACGAGTATTGTTACAGAGG
ATGCTTCAAAACCTGTTCCTGCACAATCCCCAATTCAATGTGTTTTAAAA
TGTCGaaggaaacagaaaaaaagtttttttgttaaagCGAAAAACGAATG
TTTTTGCGTGGAGGAAGAAAACAGAGGATTTGGAACAGACCAAGAATCAT
CGATTGAAGGAATGCTCTACAAAGAACACATGgAATGCTTCGCAACTTCA
TGCAAAGAACTCAAAAAGATTTGTCCAGATTGCGAGTCAAGGATTTACAC
GTTGGACTTTGATGAACCGACGAAGGTGTTTTGTGATATGGAGACTGACG
GGGGAGGTTGGTTGGCTATAGGCAAAATCATCTTTGATGACGTGAGTCTC
CAATCATACCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCA
GCTTCAAAACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGT
CAACTCTACAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTC
AAACCTGGGCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAAT
AATGTCTTATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCG
GTGCATCACGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAAT
TGTCAACACACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATT
ACCGTTCTACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTG
ATGATTATTCCGGCACCTTAGGAACTTGGGAATTTTATCTTCGTTAAATG
CACCTTTATCTTTTATTGAGCAAGTTTGTGTTTGTTTATTCTCAATGGTA
CGTGGgcgaagaaaaacaacaaacattAACGAGTATTGTTACAGAGGATG
CTTCAAAACCTGTTCCTGCACAATCCCCAATTCAATGTGTTTTAAAATGT
CGaaggaaacagaaaaaaagtttttttgttaaagCGAAAAACGAATGTTT
TTGCGTGGAGGAAGAAAACAGAGGATTTGGAACAGACCAAGAATCATCGA
TTGAAGGAATGCTCTACAAAGAACACATGgAATGCTTCGCAACTTCATGC
AAAGAACTCAAAAAGATTTGTCCAGATTGCGAGTCAAGGATTTACACGTT
GGACTTTGATGAACCGACGAAGGTGTTTTGTGATATGGAGACTGACGGGG
GAGGTTGGTTGGCTATAGGCAAAATCATCTTTGATGACGTGAGTCTCCAA
TCATACCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCT
TCAAAACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAA
CTCTACAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAA
CCTGGGCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAAT
GTCTTATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTG
CATCACGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGT
CAACACACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACC
GTTCTACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATG
ATTATTCCGGCACCTTAGGAACTTGGGAATTTTATCTTCGTTAAATGCAC
CTTTATCTTTTATTGAGCAAGTTTGTGTTTGTTTATTCTCAATGGTACGT
GGgcgaagaaaaacaacaaacattAACGAGTATTGTTACAGAGGATGCTT
CAAAACCTGTTCCTGCACAATCCCCAATTCAATGTGTTTTAAAATGTCGa
aggaaacagaaaaaaagtttttttgttaaagCGAAAAACGAATGTTTTTG
CGTGGAGGAAGAAAACAGAGGATTTGGAACAGACCAAGAATCATCGATTG
AAGGAATGCTCTACAAAGAACACATGgAATGCTTCGCAACTTCATGCAAA
GAACTCAAAAAGATTTGTCCAGATTGCGAGTCAAGGATTTACACGTTGGA
CTTTGATGAACCGACGAAGGTGTTTTGTGATATGGAGACTGACGGGGGAG
GTTGGTTGGCTATAGGCAAAATCATCTTTGATGACGTGAGTCTCCAATCA
TACCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCTTCA
AAACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAACTC
TACAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAACCT
GGGCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAATGTC
TTATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTGCAT
CACGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGTCAA
CACACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACCGTT
CTACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATGATT
ATTCCGGCACCTTAGGAACTTGGGAATTTTATCTTCGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12970MSTRG.12970Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12970.1.p1MSTRG.12970.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12970.1.p1.exon1MSTRG.12970.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12970.1.p1.exon2MSTRG.12970.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12970.1.p1.exon3MSTRG.12970.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:1007264..1010063 +