MSTRG.12949.1.p1 (mRNA) -

Overview
NameMSTRG.12949.1.p1
Unique NameMSTRG.12949.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:689027..690681-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12949.1.p1 ID=MSTRG.12949.1.p1|Name=MSTRG.12949.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1655bp|location=Sequence derived from alignment at sc0000100_pilon:689027..690681- (Clytia hemisphaerica_ch_hm2_pilon)
ATTTATGAAGATATAAATAGTAGGAAATCTCTCTACAAGGAAAGATAAAA
ATGTGAAAGAGTGAGGTCGCTGAGGAAGGAATATATATATGTTATGTAGG
ATTAAACTAATTCTTGGTTAGAATTTTGCTTCGAGAAGTTTTGATAATAT
TAATTTAAGCATTATTAGAAGGATTCTGGAACAATCATGAGAAGCTCATT
CTTATCCGATGAATTCCAGCAAGATCCATTTTTCAGACCATCTGCACCAA
CCAACAGAGTTAAGCAACAAGAACAGACGAACTCTACCGAAGAAAGTGAA
ACAACGTGCAATATTTTCGACGTTCCATTAATCACAGTCAATAAAATGGT
ATTCCGTTCCAAACTTGAGAAAGGGGCGTATAAACCATTAGATTTCTTAT
CATACGCCAATTTGTTGAAACAACTGAGACAGAGTCGCACGATGGGTTTA
ACTCCAACGCAAACGAGGAAAAGAACAATCAGCGAAAATCAAAATCAGGT
AAGTTTTAATGATTTGATAAGCTTAAGAAAAAGTACGAGTGAAACTAGCC
AATGCAAGCATTCAAAAGGCTGCAAAGTCGAATAGACTTGGGCTAGACTG
AAATTGACTTTTTGAAGATCAAAAACCTTTGTATGCTGTATGCCCTAATG
ATCCAGAAACCAACAGAACCAACTAAGAAATTGTACTGAGAAAAAATGGG
CCTAGCTGAAAAAATATTTAGGGTTTTTAAAAACATCTTTCTTCTTCAAT
TTTAGAAATCTCCGAGTCAACATTTCATGAAGAAATTACAAGAACGAAAA
CGATCAACAACGCAAGTTGAAGAGACAGTGCCGCCGCATCCACACCCTTT
CAACCGGAACCGAAGAAATACGGAACAATTCAATGCTAAAACACTGACCG
CGCGGTCCGTGCTGCTGGAGATGTCCGATGAAGTCGAGGAGAATTATGAG
TTCGAATCTTCATGCGAAGATAGTGAAAAATATAACGAACTTGAACGAAA
ATTTGAGAATTTCATGAAATGGGTCAACCAGGCAAAACAAGATTATGTTG
CTATGGAGACTGTAAATTCAATTGATGAATTTCAAATTTTATTTAAATTG
TTGGAAAAATATACGTCACCGACTTTGTTACAAATTAAACCGAACAGTAA
TGGGACATGGACTGTAGTATGTCAACCACTAGAAGACTTTAAGAAAGATT
TCATGGTGCTAAGGATTGGATTGAAATACTGTTTATGTTTAGAACCGTTT
TAGGTCTTATTTCAATTTAACAATATTTCAAAATGAAAAAAAAATTATAC
AGGATACTTTTTGGCCTAAAAGAACCCAATTAGAACCTTCGGAAATAATA
TCTAAATGTGGACAAAGTCTTTTCCTATAAGGTTGAGTCCAACTGGGGCT
AGCAATCTACGGTCTTGAATACTTTGTTACCGGTTTTTTGATTTAATTTT
GAAAAGTTAAAATTTCTTGTATTTAAAATTTTTGCCATCTAATTTTTGTA
CATATATTGCTCTGAAAGTATTTAAGGTAAAGTTAATTTACCACACAACA
GATATGTATATTCTCATGTAAAAAATTCTCTAAAAAATTTCAGATTAAAA
AAATTGTTTCCAAAAATGAAAAAAAATAAAGTAGATGAACATGAAAGATA
TATCA

Coding sequence (CDS) from alignment at sc0000100_pilon:689027..690681-

>MSTRG.12949.1.p1 ID=MSTRG.12949.1.p1|Name=MSTRG.12949.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000100_pilon:689027..690681- (Clytia hemisphaerica_ch_hm2_pilon)
AAATCTCCGAGTCAACATTTCATGAAGAAATTACAAGAACGAAAACGATC
AACAACGCAAGTTGAAGAGACAGTGCCGCCGCATCCACACCCTTTCAACC
GGAACCGAAGAAATACGGAACAATTCAATGCTAAAACACTGACCGCGCGG
TCCGTGCTGCTGGAGATGTCCGATGAAGTCGAGGAGAATTATGAGTTCGA
ATCTTCATGCGAAGATAGTGAAAAATATAACGAACTTGAACGAAAATTTG
AGAATTTCATGAAATGGGTCAACCAGGCAAAACAAGATTATGTTGCTATG
GAGACTGTAAATTCAATTGATGAATTTCAAATTTTATTTAAATTGTTGGA
AAAATATACGTCACCGACTTTGTTACAAATTAAACCGAACAGTAATGGGA
CATGGACTGTAGTATGTCAACCACTAGAAGACTTTAAGAAAGATTTCATG
GTGCTAAGGATTGGATTGAAATACTGTTTATGTTTAGAACCGTTTTAGAT
GAGAAGCTCATTCTTATCCGATGAATTCCAGCAAGATCCATTTTTCAGAC
CATCTGCACCAACCAACAGAGTTAAGCAACAAGAACAGACGAACTCTACC
GAAGAAAGTGAAACAACGTGCAATATTTTCGACGTTCCATTAATCACAGT
CAATAAAATGGTATTCCGTTCCAAACTTGAGAAAGGGGCGTATAAACCAT
TAGATTTCTTATCATACGCCAATTTGTTGAAACAACTGAGACAGAGTCGC
ACGATGGGTTTAACTCCAACGCAAACGAGGAAAAGAACAATCAGCGAAAA
TCAAAATCAGAAATCTCCGAGTCAACATTTCATGAAGAAATTACAAGAAC
GAAAACGATCAACAACGCAAGTTGAAGAGACAGTGCCGCCGCATCCACAC
CCTTTCAACCGGAACCGAAGAAATACGGAACAATTCAATGCTAAAACACT
GACCGCGCGGTCCGTGCTGCTGGAGATGTCCGATGAAGTCGAGGAGAATT
ATGAGTTCGAATCTTCATGCGAAGATAGTGAAAAATATAACGAACTTGAA
CGAAAATTTGAGAATTTCATGAAATGGGTCAACCAGGCAAAACAAGATTA
TGTTGCTATGGAGACTGTAAATTCAATTGATGAATTTCAAATTTTATTTA
AATTGTTGGAAAAATATACGTCACCGACTTTGTTACAAATTAAACCGAAC
AGTAATGGGACATGGACTGTAGTATGTCAACCACTAGAAGACTTTAAGAA
AGATTTCATGGTGCTAAGGATTGGATTGAAATACTGTTTATGTTTAGAAC
CGTTTTAGATGAGAAGCTCATTCTTATCCGATGAATTCCAGCAAGATCCA
TTTTTCAGACCATCTGCACCAACCAACAGAGTTAAGCAACAAGAACAGAC
GAACTCTACCGAAGAAAGTGAAACAACGTGCAATATTTTCGACGTTCCAT
TAATCACAGTCAATAAAATGGTATTCCGTTCCAAACTTGAGAAAGGGGCG
TATAAACCATTAGATTTCTTATCATACGCCAATTTGTTGAAACAACTGAG
ACAGAGTCGCACGATGGGTTTAACTCCAACGCAAACGAGGAAAAGAACAA
TCAGCGAAAATCAAAATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12949MSTRG.12949Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12949.1.p1.exon2MSTRG.12949.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12949.1.p1.exon1MSTRG.12949.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12949.1.p1MSTRG.12949.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:689027..690681 -