MSTRG.12948.1.p1 (mRNA) -

Overview
NameMSTRG.12948.1.p1
Unique NameMSTRG.12948.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:683128..687247+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12948.1.p1 ID=MSTRG.12948.1.p1|Name=MSTRG.12948.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4120bp|location=Sequence derived from alignment at sc0000100_pilon:683128..687247+ (Clytia hemisphaerica_ch_hm2_pilon)
ttctaagaaaattCTTAGAATGcaagaaatcaaaaagtgtctattcaaaa
gttatgttatgATTATAATTTCAGACTCAAACTCATTAAAATGCCTAAAA
TCTCAAAGATAGCAGTTTTTGGAGCAAAATCTGTGGGTAAAACATCCATT
ATTCAACAAATTGTTTATGGGAACTATTCTATTAATAAGGTAAACattca
attttgtatttcttttttcaacttcatGCAATTGAAAGAAAGACAAAATA
GTATTGTTGATATCTTGTCAATCCTGAAATTTGAAAACCTAAAATGCACT
TCTTTCCATTTAGCTTTGTCGaatgatattttaaaaataatctttttacT
ACAATAAGGTAATAAGATAAATTGTTATTCATTCTTGTGTGTCATTGTAT
GGTTTGGAATTGGAGAGGTTCTTTTTCACAgacgtttttttaaataataa
gtTTCCCATAACATTTACTTCATAGATGATGTATCCAACAATAGCTGATA
GTTATGATGCATGGGTAGATGCGGATCGTGgtcaaaaagaaagaattcgA
ATATATGACTTACAAGGCCAGGTATCTCTACTGCAATAATTTTGTGTAGG
GGATATATCAGGGATACTACAATCTTTGACTAAATATTCTGGCAGAAATT
CCTTTCCCTCCTTATATCAATGTTGACACATGGAAGGCTGCCACCAGACG
TACAAAATCCTCACATCAACACTAATATTAGGGGGAAGGGATTTTCTAAG
AATTGGCCACAATTTAAGTCACATATTGTAGATTTAGCCAaaggaatatt
ttttatttaatacagCGAGGTTTTATACATGAAGTTGGcttttttgttaa
aatgttGATCTTTTTGCTTTACAGGATCCTGATCCTAACTTCATCTCTCC
ATCTCATCATATTCAAATTGCTGATGTAAGCATTCTTTTCAATTGTAATT
TTTACACCAATTTTCTGTGATGGTGATCCtttttcaatttatattttaat
tcaTATCTAGGGCCTTCTTTAAAATGTTAACATGAGATTAAAAATCctct
caattatttttaatattcatcTATTATAAATGTATCCTATATTCGAAAAC
TCTCCTTGTAttaactttattttcatttccagGCATTTATTTTGGTATTC
AGTGTGACGTCCAAAACAAGTTTTAGTGTTGtggaaaaattgagaaaaga
aaTCGTAATATGTAGAGGGAAAGATGTAAGTCTAGTAGTCTATTTTTTAT
ATCtctcagccaaaaaaaaaaactttatgtcTATACTTTAGACGATACTA
TCATCTGATACACGTATCatctgatacacgttttttaacacccccttctc
acagaaccgctaggatttttttcagctaGTAGGGATAAAAATAGCAGACT
AAAACTCTATGGGGATTGAAATTTCCATGttttttttGGCTGGGCCTCTA
CATTCCATTAtcttcaagtcaaaaaattcagtgggaatgggaAAAAGCAT
GGTATTTTGcattgaggattggtttatttgattctttttagtgggaacaa
aaatttgagtaaaGTTTTCCACTGGGGGcggtattttggccaatttttcc
agtgtgaacggctcccagtgggtctgtgagaaggggtgttttTATCATGA
TCTGATCATTTCAGGCTTGAATATTCCCAAGTCTTTATCTCAAAAGTATA
TTTATGTAGGTTAAACGTTCAATGTTTTGagttaaaaaacatttcaatac
TGTACACCAAGTGTCTTTATTATAAATTTAAGTTTGAATTTGTAttgaat
aataaatttttttgcttgtcaTCCCCAGGTTCCAATAGTTGTTTTGGGTA
CGAAAGTGGATATGTCAGAAACGCGGGAATGTCAACATAACGAAGTCATG
AAGTGGGCTGACCATGAAAAAGGTTTGACTAGTTTTGTTTTATGAGCTCC
GGaattatacagggtgtcccggaAAAAAGCCTGTTTCAGAACGACTACAA
GTAGTAAGACTTTTGTGTCTGTATGTCTAGTTTTTCTAGTTACAATGAAA
CAGAAACGCAATAAACTTATAAACATGATCAAATTATCAATTGTGTAATA
AAACATTTCAATGTCTCTTTCAAACAAAGTATGAAAAGACATTAACGATc
gcttttttctgggacaccctgtatatctCTAAGCAACTCCAATTCCATAA
TAAGCACTGCCCGGCAGTGACAAATATCATATTTCTTATTACCCAACACG
TCACTTACAAACAATCAATTTTATGAAAGTGTCATTGTAGAGAATTAGAG
ATGCATATCATGATAAGAAATCACTTTCTGTATTTTATTCGTTATCATGA
CAAATTTTAATTCATCCTTTCATTATTGATAGCTTGCAcaagaattaaga
aaatttcactGACTAGATATAATGTTACGGGAGTATAATTAATTACGGGA
GTCTATTCTCCATATCAGACTCGACAATATCCATGTTctaaaaaccttga
aatattGATTCAGAACCCAAGAATCCCGAACCTTGGCTGGTATCTTCATA
AAGTGTTCTGCTTAGTTAAAGCATAAGAACAGGTAGCAAGCTATTTATCA
TTCGTTTTGTTTATCGGGAATTGTAACCCAAGAGCTTGAGCACACTGTTC
ATGCAGTGAATCTGCAATctatagacgatatcggatttagataaatgcaa
tgcattctggtttctagggactctcaaaggaattataatCTATTATAATT
GATCTattataattcctttgagagtccctagaaaccagaatgcattgcat
ttatctaaatccgatatcgtctattggtaTTCAAGCCATCTACTAAGTAT
CAGCGtatctaaatttttgatttgactATTGACTACTACCCAAAATTTAT
TTATCTGAAAGACTTCACTTGATCTAAAATAAGTCTAATAGGTCTACTAT
ATAATATCAGCAGCTAAATAATTTCCGCATGCGATTATAAAGTGTCCAAT
TTTAGAAAAggtttttgtatatatttatgTTTGATATGGAGTATCATATA
TTTTATATGTTAGTGAAATTATTCGAAGTGTTCGTCGAAAGTCGAACAAC
ATTACAAGAACCAATCATGTATCTACTAAAGAAATTGCCCTTATCTGCAG
GTATGTTTTagaatactttttaaaataacaTTGCATCTTGTAAATGTTAA
TTTGAAGATTGGACCAAACGAACTTATTTGTTCGAGTAAGATCAGAGAAG
GTTCTACTACTAGTAAAATCGAGTGAAAAGGTGGTTCAGTAAGTTCGATT
TAGCAGAGATGGTTGATGATGTATCTAATAAAGTTTGTTTTATAATCGTA
ACATATTTTTCTACTTTCTTTTTAGGGAAACGAGGTGCGGATGTTAAACA
AAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACTTCTTCTG
AAtcgtgaaaatatgaaaatactgACGTAGGTTTAAGTGACTTGCTCACT
CTTAAGCATCATTATGGCATCATTATGACAAGCTCGAGCGTGCTTTGTGG
ATTACAAGTACATTGCTCGATCCCAACTTGAATAAACGTTCATCTAGCGT
TTAATTGACACTTCCGATTTGagctttcaatttttagtttgtcACCGCGC
ATGGATGGACATTCGAAGTTTCACTGGCTAAACTTAAATGATTGTTTGTT
AGGATAAATGTAATTATAGTATCCTTTCTTCGGCTTTTCCATTCTAAAAA
ACATTAGCAACATAATATTGTATGAGCTTGCTGCGAAAAGTACACTGTTC
TACTATCGACAGAACTACGTGGATAATAGATATgcaatttcattttgttt
ttatttttatatccaaaatctgtaaattttattttgtaaatagtgccgaa
ttttGATATCAtcatctaaaaaaaaaacagtaattaATTGTAACTGTAGA
TTCCtaaatctttgaaaagtgtTCGGCCTTTGGGAGCACCTTGTTTACTG
TTTTCCTTTTACTTGATCCGATagaataatttccaaaaaatatttaggtg
AAGAAAATCAACACCATATTCGCaaaaaaaGCTATCTAGGTCAAGAAAAT
ATATTCTTGTAATCGAGCAG

Coding sequence (CDS) from alignment at sc0000100_pilon:683128..687247+

>MSTRG.12948.1.p1 ID=MSTRG.12948.1.p1|Name=MSTRG.12948.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4221bp|location=Sequence derived from alignment at sc0000100_pilon:683128..687247+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAAATCTGTGGGTAA
AACATCCATTATTCAACAAATTGTTTATGGGAACTATTCTATTAATAAGA
TGATGTATCCAACAATAGCTGATAGTTATGATGCATGGGTAGATGCGGAT
CGTGgtcaaaaagaaagaattcgAATATATGACTTACAAGGCCAGGATCC
TGATCCTAACTTCATCTCTCCATCTCATCATATTCAAATTGCTGATGCAT
TTATTTTGGTATTCAGTGTGACGTCCAAAACAAGTTTTAGTGTTGtggaa
aaattgagaaaagaaaTCGTAATATGTAGAGGGAAAGATGTTCCAATAGT
TGTTTTGGGTACGAAAGTGGATATGTCAGAAACGCGGGAATGTCAACATA
ACGAAGTCATGAAGTGGGCTGACCATGAAAAAGTGAAATTATTCGAAGTG
TTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTATCTACTAAA
GAAATTGCCCTTATCTGCAGGGAAACGAGGTGCGGATGTTAAACAAAAGT
TATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACTTCTTCTGAAtcg
tgaATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAAATCTGTGGG
TAAAACATCCATTATTCAACAAATTGTTTATGGGAACTATTCTATTAATA
AGATGATGTATCCAACAATAGCTGATAGTTATGATGCATGGGTAGATGCG
GATCGTGgtcaaaaagaaagaattcgAATATATGACTTACAAGGCCAGGA
TCCTGATCCTAACTTCATCTCTCCATCTCATCATATTCAAATTGCTGATG
CATTTATTTTGGTATTCAGTGTGACGTCCAAAACAAGTTTTAGTGTTGtg
gaaaaattgagaaaagaaaTCGTAATATGTAGAGGGAAAGATGTTCCAAT
AGTTGTTTTGGGTACGAAAGTGGATATGTCAGAAACGCGGGAATGTCAAC
ATAACGAAGTCATGAAGTGGGCTGACCATGAAAAAGTGAAATTATTCGAA
GTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTATCTACT
AAAGAAATTGCCCTTATCTGCAGGGAAACGAGGTGCGGATGTTAAACAAA
AGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACTTCTTCTGAA
tcgtgaATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAAATCTGT
GGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAACTATTCTATTA
ATAAGATGATGTATCCAACAATAGCTGATAGTTATGATGCATGGGTAGAT
GCGGATCGTGgtcaaaaagaaagaattcgAATATATGACTTACAAGGCCA
GGATCCTGATCCTAACTTCATCTCTCCATCTCATCATATTCAAATTGCTG
ATGCATTTATTTTGGTATTCAGTGTGACGTCCAAAACAAGTTTTAGTGTT
GtggaaaaattgagaaaagaaaTCGTAATATGTAGAGGGAAAGATGTTCC
AATAGTTGTTTTGGGTACGAAAGTGGATATGTCAGAAACGCGGGAATGTC
AACATAACGAAGTCATGAAGTGGGCTGACCATGAAAAAGTGAAATTATTC
GAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTATCT
ACTAAAGAAATTGCCCTTATCTGCAGGGAAACGAGGTGCGGATGTTAAAC
AAAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACTTCTTCT
GAAtcgtgaATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAAATC
TGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAACTATTCTA
TTAATAAGATGATGTATCCAACAATAGCTGATAGTTATGATGCATGGGTA
GATGCGGATCGTGgtcaaaaagaaagaattcgAATATATGACTTACAAGG
CCAGGATCCTGATCCTAACTTCATCTCTCCATCTCATCATATTCAAATTG
CTGATGCATTTATTTTGGTATTCAGTGTGACGTCCAAAACAAGTTTTAGT
GTTGtggaaaaattgagaaaagaaaTCGTAATATGTAGAGGGAAAGATGT
TCCAATAGTTGTTTTGGGTACGAAAGTGGATATGTCAGAAACGCGGGAAT
GTCAACATAACGAAGTCATGAAGTGGGCTGACCATGAAAAAGTGAAATTA
TTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCATGTA
TCTACTAAAGAAATTGCCCTTATCTGCAGGGAAACGAGGTGCGGATGTTA
AACAAAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACTTCT
TCTGAAtcgtgaATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGCAAA
ATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAACTATT
CTATTAATAAGATGATGTATCCAACAATAGCTGATAGTTATGATGCATGG
GTAGATGCGGATCGTGgtcaaaaagaaagaattcgAATATATGACTTACA
AGGCCAGGATCCTGATCCTAACTTCATCTCTCCATCTCATCATATTCAAA
TTGCTGATGCATTTATTTTGGTATTCAGTGTGACGTCCAAAACAAGTTTT
AGTGTTGtggaaaaattgagaaaagaaaTCGTAATATGTAGAGGGAAAGA
TGTTCCAATAGTTGTTTTGGGTACGAAAGTGGATATGTCAGAAACGCGGG
AATGTCAACATAACGAAGTCATGAAGTGGGCTGACCATGAAAAAGTGAAA
TTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAATCAT
GTATCTACTAAAGAAATTGCCCTTATCTGCAGGGAAACGAGGTGCGGATG
TTAAACAAAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGTACT
TCTTCTGAAtcgtgaATGCCTAAAATCTCAAAGATAGCAGTTTTTGGAGC
AAAATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGAACT
ATTCTATTAATAAGATGATGTATCCAACAATAGCTGATAGTTATGATGCA
TGGGTAGATGCGGATCGTGgtcaaaaagaaagaattcgAATATATGACTT
ACAAGGCCAGGATCCTGATCCTAACTTCATCTCTCCATCTCATCATATTC
AAATTGCTGATGCATTTATTTTGGTATTCAGTGTGACGTCCAAAACAAGT
TTTAGTGTTGtggaaaaattgagaaaagaaaTCGTAATATGTAGAGGGAA
AGATGTTCCAATAGTTGTTTTGGGTACGAAAGTGGATATGTCAGAAACGC
GGGAATGTCAACATAACGAAGTCATGAAGTGGGCTGACCATGAAAAAGTG
AAATTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACCAAT
CATGTATCTACTAAAGAAATTGCCCTTATCTGCAGGGAAACGAGGTGCGG
ATGTTAAACAAAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGTAGT
ACTTCTTCTGAAtcgtgaATGCCTAAAATCTCAAAGATAGCAGTTTTTGG
AGCAAAATCTGTGGGTAAAACATCCATTATTCAACAAATTGTTTATGGGA
ACTATTCTATTAATAAGATGATGTATCCAACAATAGCTGATAGTTATGAT
GCATGGGTAGATGCGGATCGTGgtcaaaaagaaagaattcgAATATATGA
CTTACAAGGCCAGGATCCTGATCCTAACTTCATCTCTCCATCTCATCATA
TTCAAATTGCTGATGCATTTATTTTGGTATTCAGTGTGACGTCCAAAACA
AGTTTTAGTGTTGtggaaaaattgagaaaagaaaTCGTAATATGTAGAGG
GAAAGATGTTCCAATAGTTGTTTTGGGTACGAAAGTGGATATGTCAGAAA
CGCGGGAATGTCAACATAACGAAGTCATGAAGTGGGCTGACCATGAAAAA
GTGAAATTATTCGAAGTGTTCGTCGAAAGTCGAACAACATTACAAGAACC
AATCATGTATCTACTAAAGAAATTGCCCTTATCTGCAGGGAAACGAGGTG
CGGATGTTAAACAAAAGTTATTTGGGCGTGGTCAGAAATCGAAAGAGAGT
AGTACTTCTTCTGAAtcgtga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12948MSTRG.12948Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12948.1.p1MSTRG.12948.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12948.1.p1.exon1MSTRG.12948.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12948.1.p1.exon2MSTRG.12948.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12948.1.p1.exon3MSTRG.12948.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12948.1.p1.exon4MSTRG.12948.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12948.1.p1.exon5MSTRG.12948.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12948.1.p1.exon6MSTRG.12948.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12948.1.p1.exon7MSTRG.12948.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:683128..687247 +