MSTRG.12941.1.p6 (mRNA) -

Overview
NameMSTRG.12941.1.p6
Unique NameMSTRG.12941.1.p6
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:576909..586150+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12941.1.p6 ID=MSTRG.12941.1.p6|Name=MSTRG.12941.1.p6|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9242bp|location=Sequence derived from alignment at sc0000100_pilon:576909..586150+ (Clytia hemisphaerica_ch_hm2_pilon)
caaaatctttgcgCCTGCGCAGCACGTGCAGATGgaagctaaaattcaaa
atggcgacgTTTGCAGAATCGCTGGAGACAAAGCTCAAAAGTTTGGAGCC
AAGCCAGACAGGAATTCAGACGCTGTCGTTGTGGATTATTCATCATAGAC
ATCACAGTGGGATAATAACTAATGCTTGGGTAGATCGTGTTaaaaaaggt
atatctttattctTGTTTTAAATGATCAAGAAGCTTAGCGCACTATTGGT
ATTCAATCTATCATCTGTCATCTGATATATAATTTTGGATCACAAAACTC
TAAAATTCCTGAGGTTGATATAGGTAAATCAGTTTAACTACAAACTACCT
ATactatttttaattcaaaagtcaaattaTCATGTTTTACATGAGATTAA
CCTGaaatcagattgtgattgtttttctACCCACCGCGTCGTCCGCGacg
taccgtgagattgggtattttagattagattagattagattagattgtat
tttaTCATGAAAACAAAtgtgctatgtctttaagaactgatttctaaaag
gcttttgttattctataaatatttctttttggattaaaaaattccatctt
ttattattctaatgattttaatatttatttatgagatgctttgttgtctt
tttaatctttgtgtaaacttgcatatgttttgcttactttccaactaaat
ccaaccactgctagcaactccagaagatttttcaaaacctatcctatctt
gtagagctttgaaaaagaaagaaaatgaggggtcataggcctccagagga
taagtggttgtaaggATATTCAAATGCTAgtcagttagccacactagcgt
cccgccaaaatgcgtatcaaagattaatgctgcgaaagcgctatatcgtt
tacttgactctcaagcaaaaaaatgcaacgcaaaacttctaaagggattc
atgaaaaaataacccggcgctttttaatgaaattaacattttcaaaaact
ttgagaaattgcctaaaatttgagccatagatgaaaaatttttagccaag
ccaaccttgaaaactaatttgaagatcaacttaccaagaaaaagatctac
ggaggaggcggaacccacctagatccgcgcactgccggataggctatctc
ccggaaattttgccggatcTCAAACAATGACCATTTACATGTGgcgtaat
tgtttttactttagcgtataaaacaaggccttaaaaatcgaagcgctgtc
tcgggaatttaatgacaaattttggttggttgatttttggctgctggcgc
gttttattttgtttccatttcaagtttttttaattgttttgcgaacttga
ttcaggtaactacTCAGTTTTTGTTGAATGTATCATGTAGATGactgttt
tttctgaaagctagattcctagtgtgactaactgtgaaaatccaaaaatg
tgtcaacaagtgtcaaaaattccaaaaatttgtcaaaaaagaaaaaaaga
aatcttccagtcatgcttcttcaattttgcatatctcttttttctagtgt
agctagagacctgaaatttggagggagaattctttgatggtgttagaata
ttattatataaaaatattgtaaatatttagttatttatcaaaataacgaa
agatatttattttttttgaaaatggaaatggagaacaaaaaaacttatga
gtaaagaataagtttttctgaaagtagaaaccccaaatgaaaagaaaatc
catttcggcagaaataaaaacatttttttgggacattcccatgcaaaaga
agcaaaaaagtgaaaaaactacatgaaaatgaacgaactaaaattagcga
atgtgatttttgaattcctcaccctttttctgataaacatacaaagtttc
agccttcaaatacattttcctccgtttccagacacatttgttcattgata
gttgcaatttttttttctcccgtcggcaaacaattttcaaaatgttgcaa
aacgttcggcattttaccaatttaccGTCTAGCCcatgtccacagtgtta
tatatcgcggaaagctaagatcacaggctttcatttagtaaaaaccggaa
cgctttagcatacatagaaacaTCTTCCATCTGAAACACTTTGATCAGAA
ATTATGAAGGCAGTAGAAGTAGTCTTAAAAAGTCTTAAAGTTCAATTGTC
GACATCTTTAAAACCATCGATTGACATAGCTTTTTGATATACCAAAAATA
CtctttttactgttttttacATAGGTATTACTTTTGTCAAAATCTGTCTG
AAGTAGGTTAATTCTAAAATATTATGATGATGTAGAGAGTTAAGTATTTG
CactatatttcttttttccagcTAAGGTTGAAAAGCGGATCAGTTTGTTC
TATTTGGCAAATGACGTTATTCAAAATGGACGCAAGAAAGCAAAGATTTG
GTCACTGCATTTGGTAAAGCTTTTCTGGATGTCATACATCTTTAcaggtt
tgttttcaaatttatgatTTACATACCTTGCCAGGGTAGTTCATTATCTT
GGATCAGAAACCCCTTCTTCCTGGCTAGTATCCCTGCCACTTCATGATTG
TTCAGCATGGTGTCCTCCAGGTTTTCAGGACCCCCATCTGTAGGCTAAAA
CCCCCATTTGGTCTccccccccACCAACCCTTTGTCCAAGGTTTCAATCG
AAAGAATAATTTTGTGACCAACCGATTCGCTATATTTTGCATAATAACTT
AACAAAATAACGATTTTCTGCAGTGAAAGCTCAAATGCTGGAAACATAGA
CACATTTAATTAtctatttgaaatattatacCTAATCTTTGCACTTTCTA
CCCCCACTTCCcataaaattttgtgaatatccCCCATTTGGATTAGTCCT
CCCATCAAGGTGAAAATATTCACTTTCCCCTCCAGAGAAAAAGTTGATTC
CCCCCATCTTTCTGTGATCCCATGTTCAGTTCACAAACATCATAAGAGTG
CTTTTACTTGCtataaaattaaattgaaatgtaaAACCTACAATCTGATC
AATCTGACTCAACTGTTTTACTATTTTTCATTGTTCTTCATTGTTTCTAT
AGGGAAAGTAAAAACAAGAGTCAAGTTGAAAGAGTGCTTAGCATCTGGGT
TGAGCGTAATGTGTACGAAGCTGGTTACGTGAACAAGCTCAAAGAACTAC
TCAACAATGGAGGTAAAATTTAAATAACATGACATGTAATGCAATAAGAT
AATTGCAAATTAAGTTTACGTTCAAACTGATTAAGGGTCGAAAGCGCTTG
CAATTTCTGATTGGAATTTGTTCATCATGAAGCATTTTGGTTTGGGAATT
GCAGGCtttttttGAAGGTGGCTACACTTCAAAAATACCCAATCAGTGTA
CCCTTAGAGTTACAACGACGTTATTTTCAGTGTTTAACCTTATTCTTATT
ATGGTTTTAGGggtggttcagaactaggggatGGGGGCTTTCCCTGTACC
AACCCttccttaacttttgatctagttggtctttttggatgaaatttgac
aCACAAGTTCCCTAATatgtaaggtaacttttgacaaaaaatctttttga
tggcgtcactcatcatgcccaaagtgagcaaaaaacgaaaatttcctttg
ttcttctAAACAGCTATTGTATTTAACAACTACTGTATTATCAATTGATA
TTGGAATTACTGAAATCGACATACCACTTGAATTTGACttactatttttt
attttgatagtgGCACCACAACCTACCTACCTCACCTGTCAAAACATCTC
CATTGAAAGTGCAACAAAAGAGAAGTTCTGTCTCATCTAATTCAAATGTA
GTGCAAAGTAGCACAAAGAAAGGTGTTCCTCCTAATTTCAAGGTAACtga
caattttattttgtgTGATCTTGtatgattttgtgattttagtTAAAGCT
TTATCCAAagaataaatttattcaaaagcgaaatttaagaaaaatatgtt
CCTCTGTAAtccttcaatatttttttctctctaagCTCAGTTACAATTCC
GtttcaaaatttagcaaacatCAACGAATCTCAAATCTATCTCAATAGAT
CtgcttttttcaaatatattttttgttcaattgcCAACACTTTCAAACTA
GCCTTTTGATGTCAATGCTCGTATGTTCCGTGCTCATGTTCCTATTCTCT
CCGAAACTAAATGAAGCCTATATTGTTATAAGGGACGTAAGTGAATTTTA
CCAATTGAATGGCTTCTTTTGAAAGGGAACCGTAGCATTTGATCATGGTc
ttaatttttggaacaatttgtttgttttaggtATCAACTCTACTGATGTC
CATAAAGAAGTCGGTCAGTCTTGACAGTGATGCAGAAAGAAAGTCCAAGA
AATTGGAAGGGATGAGAATAGACGCCACCAGTGTAGATTCCATTAAGAAT
GTTAAAGGTGAGCCAAACTGGaaaaaaaCTGTAATAGCTTTGATCTCAAG
TCCCTCTCATTTAATATAAAAttcacaacaacaaaaaaattaaatagaaa
TGGTATCCATAAAGCAGCTTAAACCTGTTCGAATATCTTCAGTCCCATTT
TGCCAGTTTTTGACCTCGATTTGATGAATGCACTTCTCCTTTGATATGAG
GCAATAAATTTtcgaaacaactttcttgtTCTTGCATGAGAGAGGAGATC
ATTGTTTCAATTAAAGCCAGTATATCTATTCATGAGTATTTTGCTTATTC
TGCAAAAATATTCcacagctccattaaaaacgcagacaattcattccaat
tcttATTTGACACTTTGCAGTCAAAACATTGTAAACTCTCTGGttattaa
aatgttatattaaagtgaagacattgcagtgttgAATCGAACAATTAAGT
TACGTCACGCGCTATCTTTtgtttgatgattggttgaataaCTGCAATCT
CTATGAAGCTCAGCGTTTTTGaagcagcgattcagacctcggaaaacata
atgtcaatctggctttaacTTTAATTTGGTGTTTAGATCGTTCAAGTGTC
GGGCATTTCCATAAAGAGTTTGATGATTCGAAGATCATGCTTGAAGATTA
CATCAACACATTACGTCACAATGTCCAAGAGAAACAAAAGATCTTACCTT
TGCTGAACAGCAGTGAAGCATTTTATGCTCTAGCTCAAGATGAAGCCAAA
GTCATCGTCAATGTAAGATTCTACTGATTGTCTGAGATTTTTTATTCAAG
ACGGAAAAGTTTTCATATCATCCCGATCTCTTTAACTAGCCAACCCTTGC
CCTTGTTTATCAAAGATTATGAAAAAGCTCTATTGTCTTTACCATTCACA
TGATTGCTTTCATTTTCGTCAGCATTAGAACCATTCCTTTGTTTTCCTGA
TAGTGGTGTGTAGTTGTATTTTTGAAGTGATGATCTTTCAAAAGTGCTGG
TTTCATTTGCAACCAAATCATCCAGTTGATTTCAGCTAGACGGATAGTAT
TGGCATTGCTCGATCAAGATCCCTTGTATTTTCTTGACACATAAGTTCAA
GATGGGATAAccctttgtgtgtgtgtgtggtgACCTTTTTCAGGTTGAGG
TTGGGTGAGTGATCCCGCTATTCTTTGAGAGTTCAATTCACGGTTATTTC
ATGTCTCCATTTCTCTATTCAGGCTTACAAAACATTTGGCAATCGTTTAA
ATtcgatgaaaagaaaacttgatGTCAAAATCTCAAAGCTAGAAGATGAC
GCCAGTCGAACACCTGAAGAACAGACGGATTCTCGTGGTCACAAAATGAG
ATCTTCAAGCGGCGGAAGTATTCAGGATATGGACTTAGGTAAGTTACTta
agccatttcacagtcgGAACAAATCAttggtaatcaggactgattgtgTC
CCCATAGCAGAAATAAACCAACATTTTAGACCATTAGAAAGTCGTTATCA
GAGCGCGGTGGTCCCTTTCCCCATAGTTCTTTTCAACCGTGAAATGGCCT
TTTTACATTGAGTCGATATTCATTGAGCTTTAACTTGTAAATTGACCAGA
AAGAATCTTAGTTAACTATTCAATTACTTCTTTGTACTCCTCGCAAACCT
CTTTTTACTAGGCCGGCTTCTAATTAAATGATGTTGGCTTCCAATTAGAC
GGTGTTTAGCTATCATGTTAGGGGTTGCTttaaatatttgacgtcattct
caaatcaaaattcttttcgGACCTAGACTTAGTGCTTGTTGTAGAAAGTC
TATTCCCCCTCTGAAGCGTGAATTTTTGCTTTGACCATCACTGTGCATTA
TTTCCACTTTTCAAACAGTGAATTAGAGGAGTTGTGAAGCAACGGTAGAA
CGCTTACTATAGAAATTACCTTATAAAGTTCTGTTTTTCTATCCATCTTT
TTTAGACAGTGAATCTGAGGAGGAGGATGTACCTTCATCACAAGCATACA
ACCCTTCAACAGCTCCTAGTCACGAAGACCTCGCACAGCAAGGAAGCACA
CCTTCATTTCTCCCTACTAACGGTGGTATGACCAGCTTTCTCGATTCGTC
CGCATCTGCGCAACTTCTTCTCCAGCAACAACCCATGATGATGTCAACAG
GTAAGGATTGGTGATTATTTTCAcgtcaatttctttttatatcAGTTTAT
ATTGCATGACATTTACAACAAATGTTTAGTTAAGGACTAGAGAAATCATA
ATCGCTTGAAGCGATTGCAGTAGCGTATATCATGAAAATGACGCAATCCT
CGCTTATTTGTAACGAGGGAATTGCCTAgtgaaaataatctttttgtgAT
CCATTTTAAAGCGAAAACACACAATGTCACCAATCATTTGATATGTCAGg
tcttttgttttgttaatttgATAACTTTGTTCCAAATAGCTCAGAAATTA
GCCTATATTGGTTTGATTTCGTTGTTGCGTTGTACAGTGACTGTATCTTA
ATCGTCATGTTCTTTACGATGTTGCCTTTTCATTCGCAGATATTGCTGCG
ATTGCTACCCAACAACAAGCTGTCCAACCTGATGTtttccaacaacaaca
acaacaagattcCGAAGATCAACAAAACACAGCAGTTAAGACACTCATCG
ACTCGCTTTTCCCTGTACTTAGTAAAAGCTTGCAAACCATCAAAGAAAAG
ACAAACGTCGGCGATGAAAAACCGTCAGTGAACGCTGCCATGGCCTTCGC
ATTGGGCGATGTCGTCAATATGGTACAGCAAGACGAAGCGATGGCCGACC
CTAGTAAAGCCATTTCCCCGGTTTCTCTCACTAATCCGAACGGGTTATCG
GACCATCAAACGGAATTGATAAATATTGCAGCAGGTGTTACTGAACTCGA
CGCGAATTGTCAGCCTTTATCGAGGGCGCAAAGTGTGGACGAAgagaaaa
tggagaaaaaggaaaaacatgaAGAGGACGTCGAACGTAAACGTGACGAT
CGCAAATCGACGTCCAGCGGCCGACATCGACATCGTTCGCACCGCAGTGA
CGATAACAGACACCGTCGTTCGTCAAGTCGTAGCCCACAGCGTCGCTCTT
CTCATCGCTCTTCAAGAGACGACAGGCGCGATAAGGACAGGGACCGTGGT
GATAGACGGCGCTCGTCGCGGCGAAGCCCGAGCCCTCGTCGTCGAAGTAG
TAAGGGAAGTCGTCGTCGTTCTTCAAGTCGTGAACGTGGCGAGAAACGAA
AACACTCGTCAGCCGAGGAACGAGAGAAACCTTACTATAATAACAATCGT
CGTTCGCCAACCCCTGAAATGGATGCAACATCTAACACGACAAGTGCAAC
AAACAACCCTGTTGCAGCAACAACTTCGCCACAGTTTCTacaacaaaacc
aaaaccaGACCCCACAACAGCCTATACCGAATGATCAGCCACAGTCACAA
CCGAACGCCAAGCCCATGATGATTTCGTCTTTTCAACCTGTTGATCCAAA
TGTTGCTCAACAACCAGCGCCTTCCATTCAACAACGCTTACAACAAGTTG
AAGAACCTCCTCAGCAGAACTTAGTTCCTTCCAACAACACTCCTGTTGCG
CCAACATTTCACGCTACAAACCAACAACAACAATCAACAGACGACAACAT
GGAACAATCGGACGACGATTCTCAAACTCCAACACCAACCATACAACTTG
CACCAACTCAACCCTTTCCCTTCCCTAATCCATTCGAAAATATGGTTCCA
ACACTCAATCCTATCATGCAACCGCCGCCAATGAATTTCCCGCCAACGCC
AATGCAACAGGCGGCAATGAACCTGGTGCGTGTCCAAAACCCATTACAAC
TTCTCCAGCAGGATACAGAAAACATGCCACAACCACCACCCTTTGTTCCA
CCACCCTTCTTTGCGCCGCCACAGCAGTTACCAGTCCCGCCCATGCAACC
AGATATGAACTTACCTACGAATGAACAAAACAACCTTCCTTTCAATCctc
aacaaaaacattttttaatcctCCAAATAACATAGAGGACCATCAAGCGC
CCTCATTTCCAGGCCCGCCGCCCGTACCGCCACAGTTTATGCAACAGCCA
CAAGATTTTAATCCTCGTGGCTTTCCACAGAGGCCGGAATTCCGGCCACC
GCCACCCGGGATGAATCCGGAAAGTTTTCCACCTATTCGCCTGGACGGAC
CCGGCAATGGAATGAACTTTAGACCTCCGCAAAACTTTGATAACATGCCA
GAAAATGATTTTGCGCCTCCTCAGCAATTtaaccaaaatcaaaatagacC
TCCATTTAACGATAACAGACCTCCGTTTAGACCGAGGTTTCAAAATAACT
CTCCGAGGAGAAACTTTCGCCCACGCGGCGGAAATTTTAATAACGGACCT
AGACACTTTCGTCCAAGACATCCAAGACCTGTATTATAATAATAAACgct
ttttagagaaaatttttATCACGTCATAGTATTAGATGTTTAatgtatta
tattttttggtCTTAAAGATGTTACATCTAGTAATTATAGTcatgtaaaa
tttttaattggtAGAAATATTTAGTAGATATCTTCTAATGTATTACTTTT
GTTTCGAAATGCAGGGCGTGTCCAGAAAATCGGGGCGAAATTTGCATAAG
AAGAAAACATACAAGTCTAATTGAGTTTTCgtgaataatgaaaatattta
cattCTCCAATCCTCGTTAAATTTCCACTCTAATGCAAATTACTGTTCGA
ACATTTTTTGGACACACTCTTAATTGCTACACTAATTTGAAA

Coding sequence (CDS) from alignment at sc0000100_pilon:576909..586150+

>MSTRG.12941.1.p6 ID=MSTRG.12941.1.p6|Name=MSTRG.12941.1.p6|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000100_pilon:576909..586150+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAACAGCCACAAGATTTTAATCCTCGTGGCTTTCCACAGAGGCCGGA
ATTCCGGCCACCGCCACCCGGGATGAATCCGGAAAGTTTTCCACCTATTC
GCCTGGACGGACCCGGCAATGGAATGAACTTTAGACCTCCGCAAAACTTT
GATAACATGCCAGAAAATGATTTTGCGCCTCCTCAGCAATTtaaccaaaa
tcaaaatagacCTCCATTTAACGATAACAGACCTCCGTTTAGACCGAGGT
TTCAAAATAACTCTCCGAGGAGAAACTTTCGCCCACGCGGCGGAAATTTT
AATAACGGACCTAGACACTTTCGTCCAAGACATCCAAGACCTGTATTATA
A
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12941MSTRG.12941Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12941.1.p6MSTRG.12941.1.p6-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12941.1.p6.exon1MSTRG.12941.1.p6.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon2MSTRG.12941.1.p6.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon3MSTRG.12941.1.p6.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon4MSTRG.12941.1.p6.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon5MSTRG.12941.1.p6.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon6MSTRG.12941.1.p6.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon7MSTRG.12941.1.p6.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon8MSTRG.12941.1.p6.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12941.1.p6.exon9MSTRG.12941.1.p6.exon9Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:576909..586150 +