MSTRG.12921.60.p1 (mRNA) -

Overview
NameMSTRG.12921.60.p1
Unique NameMSTRG.12921.60.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:382241..388985-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12921.60.p1 ID=MSTRG.12921.60.p1|Name=MSTRG.12921.60.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6745bp|location=Sequence derived from alignment at sc0000100_pilon:382241..388985- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTCAATAAACATACTTTTCCGGCCAAAAATAATATATCTTAAATACTG
TATATAATAATATATCTTCAATCACTTTAATTTATACTTTGCTCTAGTAA
AAATTATTGACATGGAAGTTAAACAAATACCAATCAACAATGAAGATTTA
CAGAGGTTTAACAGTGACTGTTATACATTTAAAGAGCATCCCTTGAGTAT
GTTGGAACCATACCATCAAGTCTTTCCATCACTTTATATGGATCACCACA
AATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACT
TTCCCAAAATCAGGTTGAAATATTAACCAAGGAGATTACTTGGTACTAAT
CTCTGAATTTGTAAAAGATAGATTAAGATTTTCTGTTCTTTAACAAAATC
ATCACATAATAATTCATACAATTCACCATTCACCATTATTATTGCTTGTT
TCCCTTTTTATCAACAATTGTTATTTTTCGATTTTCTTTGAAAGGCCTAC
CAGGCAGGCTAAGATTGTTGACAAAAGTTTTTCTATTTAATCTCTATTTT
TTATGTTCTAGGAACCCGTTGGATGCAAGAAATTGTCTCTTGTCTACGCA
ATGGAATGGATTTTGAAAAAGTAAAGACCACCTCTTTGAACCTAAGAGTT
CCATTCTTTGAGTAAGTTTTTAAAGGAAAATGAGAAAAAATATTCAAGAA
GTAATGAAATATTTCAAAATTAATCCTGCCAACTTTATATCATTTGTATT
TACAATTTAGTGTATCTGCTGTATGCAGCACTGCAGAGAAGGAACTCAAA
GCATTGGGTTCCCTTTGTAAAACTGGAGCTGAACTTGTCAACCATACACC
TCGACCAAGGACTATAAAAACTCATCTCAGCTATGAAATGTTGCCTCCAA
AGATTCATGAAAAAGGTGCCAAGGTATCAAAGTTTCTTTTCCAAAACTTA
TGAATAGAATAGAACCTAGTCAGAAATGGACCTCACTTCTATTATTACTA
TAATTCTTCCTTGATATTTTCTAGATGATAAACGTCATACGAAACCCACG
TGATGTTTGTGTATCATTTCTCAATCATCATGTTCTGACAGAAAACTACA
CTGGTGATTTACAAACCATCGCAGAGATTATGTTACAGGATGTAGGACCT
CTCTGTGCTCCTTTCTTTACACATATCCTGAGCTACTGGAACCAACGAGA
AAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAAGACATAG
CTGGTAAGACAGCCTTTTTTATTTTTCACTTGCTTTATAACATATTTGAA
AAAACCCATAGTATGTAGATAAAAGTATCTTAGTAATTTCAAATAAAAAA
ATTCATCTCTGTTTGTATACATGCTTATTCAACATGCATGTTGTAGTCTC
ATTTTACATGGAAAATCACAGCTTAAAATTTCACAATCACATGCATGTAA
AGATAAATTTCTATACCCCAAAATTACAAAAAAAAACATGCATGTAGTGC
GGTATTACACCCCGAAAATGAAACTCATGAATGTAAAAGTGTTTTTTTTA
ATGAATTTTGTGTATGATCATCAACTTTAAAGGAGAAATCAACATTTTTT
TCATATTTTTGAAAAATACCTAAATCACATCATATTGTAGCCTGAGAATC
CAAGCTCATATTTTTAGAAAAAACAAAAAATACCTCACCTCACAAAGTTT
TAAAATTATAGAGCTTGGTGCAGGTAGATTAGTCTGACACAGAATGTTAT
AAACAGTCTGTGTGTGAACCCTGTTGACGTAGACTTTCTGAACTTTGGAA
ACCCGGCAAACACACATAATCAACTTACCATAAAAACTCTAGCACAAGCT
CTAAAGACTTTCAAAACTACTAAAAACCACATCAAAACATCAGCCACATG
TATTTAGACTTCCAGTCAACAGCCATTTGTTTATAAATGAATCTATGTTT
TCATTTTCATTTGTTTTCCTTTTTTCTGCAAAGTCAGCTTTTTCCATAAA
TTATGCGCGCGCATCGAAATTATCAAAATGCGCGCGAAAGTACTGCTAAG
TAATACGCCGAAAGCTGGCCAATCAGGCCGAACCTGCATTGCAGTGAAAA
ATGTCCCTGCAGGCGAGTTACCTGCACCAAGCGTTAAACCAGCAGCAAAA
ATATCATAAACTAGACTGTGAAAAAAGTTTAACGCTTGGATTCCCAGGCT
AATCATATTGCTGTGTCAATTTAAGACGGCCTTAAGTCCATTTTTTCCAT
TTTGAGATAATCGACTTTAAAGGTTGAGATGTGTTGGACTTAAGGCTACA
CATTTCATGTCAATATTTAGAAAATGAATAGAATTAGAAACTATAGTTAG
CCCTAAGATTTAGGACTTAAGGCTGTTTATGATTGATATATTATGGAACA
TTCTAAATTCTTATTTTTTTTGAATTGCAAAAATACACCTCTTTCCCATT
AGAATTCTGTGGATTTAAGGCCGTTTTTGAAAAGCGTGCATGCTGAAATA
GGGGGTTATGGTCGACAAAATGGACTTAAGTCGATATACTAATAAGAAAT
TAATGACATCTGAAATTATTTTCCACTAAAAACTTCTCTTCTAGCAAAAG
ATATAGCTCATTTTTGTTTACAGAAAATCTAATCTTTTTAAAACAACGCA
TTTTATGTTAGGGGAATAGGTTGAGCCATCTGTTTGATGTGAAAGTGTTT
ATAAAGTATAATTGGAAAAGCTCTTGCTTTTAGTTGATAAAGAACTCTTA
AACTTTTTTAAACTTTTACAACTTAACTTTTTTAATGTGTAGCCAAAACT
TTTTATATCCACATATGGGTTAGCCAAGAGAAGGATATCATTTAAGCCAT
TTTTGAGTGGAGTAAAACTATGTTTGAACTTTTGAAAACAACCAAGTGAA
AATAATTTCAGAGTCCATTGAAAAAATTGAATTTTTCATTGGAATAAGCA
GAAAACCTCTTTTTTAGCGGCTAGTTCGAAACGCAGGTCACCTCATTTTG
TGATAACGCCATTATTTCCATAATTTAGGTGTCACTTTGTCAATATTAGG
GGTTGATGATTTGTCCTTGAAATCTTAATAGCATATTTTGTTTGTATACA
ACATGTCCATTATGCATATAATATTTAAAAAAACATGTTATGAATGGCAT
GTTACGAGTGCAGTACAGTTTTCTGGACTGTAGTTTATATGACCTGTAAC
CTGTGACCTGCGTTTCAAACTAGCCGCTTCTATAATCCATGTCAAACTGA
ATCTTACCCGAAATGATTTTGCATTATTTCTCGTTTACAAATTATCAAGC
TTTTAAGTCGCACAAAATGCACAAAATTCATAAAAAGTATGAACCATATG
ATGTCACAAACATGTGTAAAGTAAGGGTTCATTTTAAACAAATTATACGC
TTTTTGAAGAAGGTTTGATACAAAATAAGACAGAGGCTGAGAGTGGAAGT
GATTTTTTTTTCGGGGAGGGGGGTACTTGTTTTGAAAACAACTATAGCTA
TAGGTTTGGCCCAAAAATTTTTGAGACATACAGATGGGAAATATACACAT
GTTCAAGAGCACGAGTAGCACGATATTGAATAATTTAGTTTAATTTCCTT
GCTTACGAAGGAAGAATTCATTTCATTTGAAAATTTTCATATTTTCATAG
GAATAAGGTAATTTGCTACCATTACAGTAAAGGTACAGCTAAAAACATAC
CCTTACAGTGCAGCACTGGTCAAAACATACCCTTACGGTGCACTAGCGAA
TCTTGAAAAATTGACCCTTAAGTGCCGCACGTCTGGTAAATCATTTACCT
TGAGTGCCCCCCGGGTATTTTTTCGAAGTTCTACTATATTATCTTGTACT
TTCTTATTATTCTTGTAATTTCAGAGAATATGAAAAAAATTAATTGCTGC
ACTTACAGCATCACTAATTATCAAACCTTTCTTTTTTCGTTTTCTTTTGG
TTTTCTTATAGGTGTTATCAAGCGAGTGGCCAAGTTTATAGGCACAGAAG
AATATTCAGATAACCAAATAGCAAAACTTATTGACCACACATCAGTGGAT
AAAATGAGAGTCAACCCTATGGTCAATGGGACAGGAGTTATAGATGTAAT
TACACTTTCTTCAATTAATTAATCATAGCCAAAAGTGGGCAATGCTCTTG
ACTCAACATCAGATGCCTAAAATTGATTCTTTAAAGGGTTTCGTATTTTC
AAATGAAGTGTTTTCCACCACCCTTCATAGGAATAGGAACTCCCGGGGGG
GGTACTAGGGCAAGATGGGTTACGGGGATGCTCCGCTGGTCAGGGTACCT
TTTTTAACCTCCACGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGA
AAAATCAGTCCCTCGTAGGGTGCCTATTTTTGGAAAATTTGGGGAAAAAG
TAGAAAATTTGAGAAAATTTTGGAATTTCAGTCCCATTCAGGGTCACTTT
TTCGCAAATTTTGAGTCCCACGTAGGGTCCATTTTTCGAACCTCAGCGGA
GCACCCCCGTCGGTCGACAAGGGTAGTACCCCCCCCCCCGGTAGGAACTC
ATAGAAAGAATTTGATTTGAAGCCTTCATAAAAAAAGTGCAAGGTCTTGC
AAAGTTAGGCTAGTTTTAGAATGTTTAGATTTTAGGTAGATCTAGGCGTG
CGATGACCACATTTAAATTTTTCTTATATGCCGAATCCTGTATACTGGAT
CTATATGTTCTATATTTTTAGTGAACAGAGCTATTTAGTAATTAGCATAA
AAATGCCTTTTTGATAAATCTGATAGGTCAAAACACTTTTAAGAAATCTA
AGGTTTTTTTTTCATTATAACATAACTTTGGATCTAGTTAACCAATTTTT
AGAAAAGACCCATGTTTTGAGTTTATATTCTTAAAAATCATCAACCTAAA
CATTTTTTTTAAACAGGGTTACCTATTTCTGCCACATCCGTTAGATCTTA
TTCATATTTCTGTTTTTTTTTTTTTCTTCAAATTAAAGCTACTGACCTTT
AGACCATGTTCACATTTTACGATTTGGTTTTGATCCGAAAGGAAATGAGG
TCATTTCATGGGTTAGAAGTGACGTTTGATTTGAATGTAACCAATGGCTT
CATTTTGTTTCAGAGAGAAACGAAACCGTAGCGTGTGAACCTGGTCTTTA
AGCAACCTAGAGACATTTCAATTCTTATGATTGGCAATCATTTGAACAAT
TTTGAAAATATCCATCATGAAGGTAAATTTATTTTAGACTGCAATGGCAG
CAATGAAGAATGAGCAAAAGGGAAGTTTTATCAACACTGGGAAGACAGGA
GGATGGAAAACAAACTCACTGAAGAAACTATTGAGAGATTTAAAAAATGG
GAAGGGAAATGGTTGAAGGACACTGGATTAATGTTTGCTTATGAAGTTTG
ATTTTTTATTTAATATCATTTATTTAATTTTTTAGTTAGCATTTTACAAT
TATTTTTTAAAAGATTGAAACTTTTTTTGTTTCAGCATTTTTCCAAATTG
GGCTGAATGGGGGGAAATTTAGGAAAACAATAAGATTTGTTTATTGGTCA
CATGAGATTATCTTTCCTATCTGCTGGGTACGCAGCAACAAAAATGTTTT
TCTCTTCAAAGTGAATTTTATTGAGGTCTAAAGATTTTTAAGAAAACCAT
TCCTTTCTATGATAAAGAAGAAAGATAAAGTTAAATTTAGAACCTGGTAG
TATGTCAGTAGTATACTGAAGAAGAGTTTTTCACTCAACTGGTTCTCAAG
AAAATTACCCTAAGCGAAATTAAGTATAGATGATATTTACACGTCTTACT
CTGCCAACCATTCTTATATAACAATTTGAAATTAGATTAAAAAAACAAAA
AACAATGGAAATTAAACAAATACCAATCAACAATGAAGATTTACAGAGGT
TCAACAGTGACTGTTATACATTTAAAGAGCATCCCTTGAGTATGTTGGAA
CCATACCATCAAGTCTTTCCATCACTTTATATGGATCACCACAAATCATT
TCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAA
AATCAGGTTGAAATATTAACCAAGGAGATTACTTGGTACTGATCTCTGAA
TTTGTAAAAGATAGATTAAGATTTTCTGTTCTTTAACAAAATCATCACAT
AATAATTCATACAATTCACCATTCACCATTATTATTACTTGTTTCCCTTT
TTATCAACAATTGTTATTTTTCAATTTTCTTTGAAAGGCCTAACAGGCAG
GCAAAGATTGTTGACAAAAGTTTTTCTATTTAATCTCTATTTTTTATGTT
CTAGGAACCCGTTGGATGCAAGAAATTGTCTCTTGTCTGAGGAATGGCTT
GGATTTTGAAAAAGCAAAATCAAGTCCTCTAGGCTTAAGAGTACCTTTCT
TTGAGTAAATATGTTTTTTTCGTATTTAAAGAAGTATTGGCTGAAATTCT
TGGGCTGAACTAAATGGGAAATATCAAAACTGAAGATAAGATTGAAATAG
ATATTCAAAAGATTAACTTTCTTTGTTGTCAATAAGCATCAATGGTCTAC
AATACATAATCTTTTCTCATTTTAGTTTTTCAGCCGTCTCTTATAACGCA
GAAAAGATGCTCAAAGCTTATGGTTCTTCTTGCAAAACAGGAGCTGAACT
TGTTAATCATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCTATG
AAATGTTGCCTCCAAAGATTCATGAAAAAGGTGCCAAGGTACCAG

Coding sequence (CDS) from alignment at sc0000100_pilon:382241..388985-

>MSTRG.12921.60.p1 ID=MSTRG.12921.60.p1|Name=MSTRG.12921.60.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1413bp|location=Sequence derived from alignment at sc0000100_pilon:382241..388985- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTTCAGCCGTCTCTTATAACGCAGAAAAGATGCTCAAAGCTTATGGTT
CTTCTTGCAAAACAGGAGCTGAACTTGTTAATCATACACTTCGACCAAGG
ACCATAAAAACCCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGA
AAAAGGTGCCAAGGTACCAGAACCCGTTGGATGCAAGAAATTGTCTCTTG
TCTGAGGAATGGCTTGGATTTTGAAAAAGCAAAATCAAGTCCTCTAGGCT
TAAGAGTACCTTTCTTTGAATGGAAGTTAAACAAATACCAATCAACAATG
AAGATTTACAGAGGTTTAACAGTGACTGTTATACATTTAAAGAGCATCCC
TTGAGTATGTTGGAACCATACCATCAAGTCTTTCCATCACTTTATATGGA
TCACCACAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGA
TTTGCACTTTCCCAAAATCAGTTTTTCAGCCGTCTCTTATAACGCAGAAA
AGATGCTCAAAGCTTATGGTTCTTCTTGCAAAACAGGAGCTGAACTTGTT
AATCATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCTATGAAAT
GTTGCCTCCAAAGATTCATGAAAAAGGTGCCAAGGTACCAGAACCCGTTG
GATGCAAGAAATTGTCTCTTGTCTGAGGAATGGCTTGGATTTTGAAAAAG
CAAAATCAAGTCCTCTAGGCTTAAGAGTACCTTTCTTTGAATGGAAGTTA
AACAAATACCAATCAACAATGAAGATTTACAGAGGTTTAACAGTGACTGT
TATACATTTAAAGAGCATCCCTTGAGTATGTTGGAACCATACCATCAAGT
CTTTCCATCACTTTATATGGATCACCACAAATCATTTCAAGAAGCTGAAG
TTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAAATCAGTTTTTCAG
CCGTCTCTTATAACGCAGAAAAGATGCTCAAAGCTTATGGTTCTTCTTGC
AAAACAGGAGCTGAACTTGTTAATCATACACTTCGACCAAGGACCATAAA
AACCCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGAAAAAGGTG
CCAAGGTACCAGAACCCGTTGGATGCAAGAAATTGTCTCTTGTCTGAGGA
ATGGCTTGGATTTTGAAAAAGCAAAATCAAGTCCTCTAGGCTTAAGAGTA
CCTTTCTTTGAATGGAAGTTAAACAAATACCAATCAACAATGAAGATTTA
CAGAGGTTTAACAGTGACTGTTATACATTTAAAGAGCATCCCTTGAGTAT
GTTGGAACCATACCATCAAGTCTTTCCATCACTTTATATGGATCACCACA
AATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACT
TTCCCAAAATCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12921MSTRG.12921Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.60.p1.exon3MSTRG.12921.60.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.60.p1.exon2MSTRG.12921.60.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.60.p1.exon1MSTRG.12921.60.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.60.p1MSTRG.12921.60.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:382241..388985 -