MSTRG.12921.56.p1 (mRNA) -

Overview
NameMSTRG.12921.56.p1
Unique NameMSTRG.12921.56.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:373657..382134-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12921.56.p1 ID=MSTRG.12921.56.p1|Name=MSTRG.12921.56.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8478bp|location=Sequence derived from alignment at sc0000100_pilon:373657..382134- (Clytia hemisphaerica_ch_hm2_pilon)
AGATGATCAATGTAATACGAAACCCACGTGATGTTTGTGTATCATTTCTC
AACCATCATGTTCTGACAGAAAACTACACTGGTGATTTACAAACCATCGC
AGAGATTATGTTACAGGATGTAGGACCTATCTATGCACCTTTCTTTACAC
ATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTTTTGATTGTT
CACTATGAAGAGATGCAAAAGGATGTAACTGGTGAAAATTTCTTTTGAAT
TTGTTTTTAACGAGGTCTAATTTTAACAGTTGAGCAGGGCATATAATGTT
AAAATCTTTACATAGGTGTTTCAGGTAAGAATCCAAAATGGGTTGAATAC
ACTTATCACCCTTAGCGGAAATACCTTGAAAAGGTTTGGCAACGGCGTCA
AGTTAAAAAGTACTCGTGTGAAAATTTAAGATAACTTAGTAGATTGAAAT
CTTTAACCATTTTCCAGGTGTCATCAAACGAGTGGCCAAGTTTATTGGTA
AAGAGGAATATTCAGATGGTCAAATAGCAAAACTTGTAGAGCATACATCT
GTGGATAAAATGAGAGCCAATCCAATGGTCAATGTGACTGGACCAATTGA
TGTAATTATTTTAAAACCAATTAATTTGAAATGAGTCTGAGTAAAAGTTA
AAAATTCTTTATGGATATTTTTAATCAAATTATGCTTTTAAGACTTAAGA
ATCAGGGGGGGGTGTACAGCTGCAGGGTACATACCCACAGCCAGGTGGTT
GTGTCTTATTTTGAATTTCATTTATTACCAGGTTCTATATTTGGGGTGGG
TGGGCCATTTCAACTCATTTCAAGTATCTGGTACTGATTTTGGTATTTGG
TGGGTAAAATGGGTAAAAAATTATCAATTTTGGCAAATCCGAAAAAAATT
CCATAAAAATTAGATTTCATTTTAATTTCACGATTTTGGTGAGGTGAAAT
TGACTGCTAGGTATTACAAGGTACTTTTCCAGAGTTATTTAGCCATACTT
TCCTTGGTGACCAGCTTCCAAATAGGGGGCGGAGGTCCAAAAAAAGTTGG
TACCTTATACTATCTAAGATATCTATTACAAATCTTTTTGAAAATCAGGT
TTATTACCCCCTGTTGCAATTATATTTCTAGTAAACAGCTATGGTATAGC
CAGGTAGAGCTGGAGTTTGCTTTATTGAAAGAACGGGCTAATTATAGTCA
CATCCCTTTATTTGAATTGGATGAATAAAACGTTTTAATTATTTTTTTTT
AACCGTTGCTTCTTTCTTCAATTTTAGAAACTAAAGGCAGCAATGAAGAA
TGAGCAGAAAGGGACTTTTATCAACACTGGAAAGACAGGAGGATGGAAAA
ACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGAAA
TGGTTGAAAGACACTGGATTGTTGTTTGTTTACGAGGTTTGATTTTTTTA
ACACATAATAATTTTTTTCATCACACATAAATTTTAGCAATTTTACGAAA
AACAGTTTTTATATTTTTTTTATAGAAATTTTAAAAAGTTGGGCTACTAT
TATAAACTGGGCTTAGATTGATGTTACACTTTATTTTTTAGATTCGTAAA
AACCTTTCCTCTAAAGGTGACTTTTTATTTTACCATGCTGTGACAGGTGC
CTAATTATGGGGCTTTGTTTGTTAATTTTTTTATATCCCCAAAATATTGA
TTTTTATTAAAGTTCATCACCTATACAGTGTGTGCCAAAAAAAGCAGATA
AATTTAATTATAAATTATGATCCTCATAAGTTATGCCAAACTGTATAATT
CGTATAATTCGTATTTCAGTCTAAAAAACCTGAATATTGATTGAACAGAC
AATTGTAATCTTATTTCAATTATTCTAAGCCCTTTTTTCAGGACACACTG
TATAACTGAGTGCAAGACTTATTTAGGTTTTCATGTAATATTAACATATT
TTCAGTTGTCCTTCAATAATTTCATTTTGTTTGACCAGAAATTGTATGAT
TTTTCATTACAGCAATTAACAAGGGAAATCTTAGTACTTGGATTATATAT
ACAAGATCCGCGAAACTTTTTCATTATGAGCATCATCCACAACTTGACTT
TTCAGATTTTAAACAAAAAATTAAAAAATAGATAAATAAATAAAATAAAG
CTTGAAATGAAATGGCAAAGAAGACATATGAGCTGCAAAACAATATTGAG
ACTGTCAATACAGTGGATGAAATTTATAAATATAGTCAAGAACAACAGCA
AGAAATACTATCAAGAAAACCATGGACTAAAGAGTATATTATCTGATTAT
TTCCTTTTTAATCCTTCAAATCTTTTGGCACAATATATCTGTGGAAACTT
CAAATGTCCTGACTCATAGGTTTTGCTCATTGTCGATATTTGATCACCCA
TCTCATATTTCTTCTTTGTAGTCCGCATTACTTCAAGAATATCAAAGTGT
CAGCTCTTGCATCACTGAAGATGGTAAGCTATTGACTTTTAAAGTGACAT
TGGGATCTCCCTGTATTTCCTCCAATGGTTCCAACACATTTGGATCAATC
TTCATCCTAATTATCCTAATTGTTCCCACAATCTCTTGATAAGTATAGTA
CACCATATGAACAATCCTGAAGATATACTTTTCTTGAAAAATATACATTT
GTATCCAGATTTTCTGTGAAAACTTTTAAGTTACAGCAGCTAATACGATG
GCAAATTTTACTCCCACTGCACCTATTATTTCTATAAGCCTTGTTTTCGT
AGAAAATCTGATATGGTCCATTTAACCATATCTTTTTTATAATCATTCAT
TATCACCAGGTAATGCATACACGATCAGGGGGGACACTGGAAGTCATGGG
TTTGATGTAGGGTAAAGTTGACGGAGACACCATGATCGTGATGGATGCCT
TTGCATTGCCCGTTGAAGGGACTGAGACACTGAGACGAGAGTCAATGCAC
AAGCTGCTGCTATTGAATACATGACACAATATATCGAATCTTCAAAATCT
GTGGGTTTCATGCTTGCAGAAATTATTGTTAAAAAGGAAAATGAGCTATC
AATGAAGTATTTGACACAGATGTAAAGTAGTCTGAATTACATTCATAAAT
TTAATATTTTCAAAGGCTATGTTTGACCTTCATGCATTTAAAAATCATGA
GTGTCAGATATTTGTCACCGAATATGAAGAGCGTTTGACTAACATCATCA
TAAGCCCCCCCCCCATGAGCAATCTATTTGCTATTGTTTATCGGTTTTTC
TTTCGGTAGGTTGGACGTTTAGAAAATGCGATCGGTTGGTACCATTCACA
TCCTGGATACGGATGCTGGCTTTCTGGTATCTATGGCTTTGCAGCAGGTT
TTAGGTGCCCCCTAAGAATTCAGGTGACCCCTAAGCCAATGACATGTCAA
TTTTTTTTCGAAAATCCTTTTCAAACAATCAAACAAATACAACAATTAGT
TTAGTTTATTGCTAAATAGAATAAATGCCCTAAGAAATAAGAGATTAGCT
AACTACTGAAGGTTCATGCTAGATTATCGAGTTTTTGTAAGTCAGGGTGC
AGATCCCTAGCCAGACAGATTTTTTATCTAAGTAAATGCAACAGGATTAA
ATAATCAGTGCCGTAGGAAGCATTTTCATATTAAGGGGGCTGAAGTTTAG
TGACACTGGTTGGCGAGGGCCAACCGGTTTGGGCCGAGGGGGAAAATTTT
GAAAATTTGAGCTCTAGATTGCTTGAAAATGCACTCAAAACATGCACTTA
TAAGACAATTATGACAAATTAAAAAAGAAAAACTTTGTATTTTGCAAAAT
AACCATTTAAAAATTATTGGGGGCATAGCCCCCCCCCCAGTTGCTACGGC
ACTGCAGATAATATATTAGATACCAAATTGTCAGTTTTTGAGCATTGCTT
AGATTAAAATATAAGATGAGAAAGTGCCAACCTATGGTCTGGTAGGCTGC
TTATAATTCAATCACCAAACATAGAATCTAGCCCCCAGGTCCATCTGAAA
AAATTAGGTGACCCCTAACATGGTTAGTCCCCCCTAGCCACAGTAAAAAA
TCAGGTACCAATTACTGCTCGACCTTTTAGCCCCCCCCCTCCTCAGGCCA
GGGGGGTTCCAGCCATGGTATCGATGTGTCCACACAAATGGTCAACCAAC
AGTTTCAAGAACCATTTGTAGCTATCGTTGTAAGATCTCTTTCTTTATCA
TGTCACTTTGCAGGAGTTGCTTGATTGCTTAAAAGTACAGGGGACGCTTA
CTTTGGATCTATAAATACTGTTTGATTAAAATGAATTCGTGTCTCTATTT
GTGTTCATTTGGACCTACCTGCCTCTTGCATCACCTTGGGTATGATAACA
ATCGAGTTGATCAAAATAGTACCAAAAGTATTATATTTTATAAATATTTG
AATATTTTTATTCCCTTCTTTGTATTTTTGAAAAAATGACGTCACTATCT
TTGTATCTCTAAAACATATCTCTTGGAGCACTTAGTGTTTTCAAAACATG
TCAATCTATATTCACCGTCAGCAACCTATTGAGCATGAAAAAATATTTTT
TGTGAATAGGTGTACTCACCTCATTTTGTGACAACGTCATTATTTTCATT
ATTTAGGTGTCACTTTGTCAATATTTAGGGTTGATGATTTGTCCTTGCAC
TTGTTCTGAAAACAACCATACCTTAGGCTCAAAAATTGACTTTCAAAATC
AGACCCTTTCCTCACAGTGTAGAAATAGGCTACGAAAAGTACCTACCTTA
CTTACAGTTCATCATTCTTTTCATCAGACCTGTTCAATGAAACACCTCCC
TTTCAAAAAGGTAATTTTTGAGACATACAGATGGGAAATATACCTGAGAC
CTTTAAAGTGAATTTTATTGAGGTCTAAAGATTTTTAAGAGAACCATTCC
TTTCTATGATAAAGAAGACAGATAAAGTTAAATTTAGGACCTGGTAGTAT
GTCAGTAGTATACTGAAGAAGAGTTTTTCACGCAACTGGTTGGCAAGAAA
ATTACCCTAAGCGAAATTAAGTATAGATAATATTTACACGTCTTACCCTA
GCAATTTAAAATTAGATTTTAAACAAAAAAAAACAACAACAATGGAAATC
AAACAAATACCAATCAACAATGAAGATTTGCAGAGGTTTAGCAATCATTG
TCATACATTTAAAGATCATCCCTTGAGTATGTTGGAACCATACCATCAAG
TCTTTCCATCATTTTATATGGATCACCACAAATCATTTCAAGAAGCTGAA
GTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAAATCAGGTAGAAT
TAATGGGTGCTTATTTTGTGTATTTACAGCTTGAATTACAAACTTATTCC
ATATGGCAAATAAGTTCTCTTGTGTCATTTTATCCCGACTCTCCTTTGGC
ATAGGTTTGGGATTGATCTTTGTAACTGAAACCTTTTTACTTCATGAGTG
CATATTGAAGCCGGCATCTTAGGTATGTGAAGCTTTAAATAAGTGAAAGC
AATTGCTGTCAGGTTTAACTATTACAGCAAAACTATAATTGTCTTGTTTT
GAATTTAGGAAAACGATGATTTAGAGTAATAAGAAGTGTTCAATTCAAAT
ATAAGAAAGATCAAATCATTAGTATTTCTGAAGGATTTACTATTCTTTAC
TTTTCCAGGAACCCGCTGGATGCAAGAAATTGTCTCTTGTCTGAGGACTG
GCTTGGATTTTGAGAAAGCAAAATCAAGTCCTCTAAGCTTAAGAGTACCT
TTCTTTGAGTAAATATTTTTAATTTTTTTTTATTTAGAAGTATTGGCTGA
AATTCTTGGGTTGAACTAAATGGGAAATATCAAAACTGAAGATAAGATTG
AAATAGATATTCAAAAGATTAACTTTCTTTGTAGTCAATAAGCATCAATG
GTCACAATACATAATCTTTTTTCATTTTAGTTATTCAGCCGTCTCTGATA
ACGCAGAAAAGGTACTCAAAGCTTATGGTTCTTCTTGCAAAACAGGAGCT
GAACTTGTTAATCATACACTTCGACCAAGGACCATAAAAACCCATCTCAG
CTATGAAATGTTGCCTCCAAAGATTCATGAAAAAGGTGCCAAGGTACCAG
AACTTATTTTTAGCTGATGAAGGGATTCAATTGAAATAGTTTGATTTTTT
TTATGTTAAAAATTCCCTGATTTTGATTTTTTTAACCAAGGCAAATGATT
TCTATTCAGATGATCAATGTAATACGAAACCCACGTGATGTTTGTGTATC
ATTTCTCAACCATCATGTTCTTACACAAAACTACACTGGTGATTTACAAA
CCATCGCAGAGATTATGTTACAGGATGTAGGACCTGTCAGTGCACCTTTT
TTTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTTCT
GATTGTTCACTATGAAGAGATGCAAAAAGATATAACTGGTTTATATAAAA
TCTATATATAAATTTCTTTTGAATTTTTTTTTAGCGAGGTCTAATTTTAA
CAGTTTAGCAGGGCATATAATGTTAAAATCCAAAATCTTTACATACTCGG
GTAACTTAATGCATGTCCCAAAAATGCATTAATTTTTCCGCCCCAGTTCC
AGTCCCTAAACCATAACAAATTATACATTTTTGGAAGCGTATTTGGATGT
AGAATATCGTATTCGGTGTAACTTAAATTCTATCTCAGCAGAATTTGAGT
TTTTTTAAGAAAACGTGCTTATGACGTCATTATTTATGACGTCATAATTT
TAAAAAGTTGAATATCTCAAGAACCAATACTCAAAGCTTTATGGAATTTT
GACCAATGATAGAACTCATCAAGAGGAGGAGAATCCTTTTTAAAAAAATT
GAAAATTTGCTGATGTCAGCATTTTATCGCAAAAATTCGAATTCTTGCAA
TTTCTGCTGACGTCATTAGTTTTCGGAAATACTTTCAAAACTTTTTGAAA
CATCTCAATGTACTTTATCCATGGTCCAAATTTCATAAAGTTTTGATTTA
TATTTCTCGAGATATTCAACTTTTTGTATTTATGACGTCATCAATCATGA
CGTCATAATCAGGTTTTCTTAAGATATCTCTAATTATACTGTGAAAGAAT
TTAAGTTACACCGAATACGGTATTCTACATCCAAATACGCTTCCAAAAAT
GTATAGTTTGTTATGGTTTAGGGACTGGAACTGGGGCGGAAAAATTAATG
CAATTCTGGGACATGCATTAAGTTACCCGAGTATGTGTTTCAGGTAAGAA
TCCAAAATGGGTTGAATACACTTAGGAAATACCTGGAAAAGTCTTGGCAG
CGGCGTCAAGTTAAAAAGTACTCTTGTGAAAATTTAAGATAACTTAGTAG
ATTGAAATCTTTAACCATCTTCCAGGTGTCATCAAACGAGTGGCCAAGTT
TATTGGTACAGAGGAATATTCAGATGATCAAATAGCAAAACTTATAGAGC
ATACATCTGTGGATAAAATGAGAGCCAACCCAATGGTCAATGGGACTGGA
CCAATTGATGTAATTATTTTAAAAGCCATTAATTTGATAATGAGTCTGAG
TAAAAGTTAAATTCTTTATGGATATTTTTAATCAAAGATTTTTGTAATCA
GGGGGGTACAGCTGCAGGGTACAGACCCACAGCCAGGTGGTGGTGTCTAA
TTTTGAATTTCATTTATTACCAGGGGTGGGTGGGGCATTTTAAGCAAGTA
TCAGGTACTGATTTTGGTATTTGGTGGGTAAAATAGGTAAAAATGGTAAA
ATTTATCAATTTTAGCAAATCAGAAAATGATTCCATAATAAATTAGATTT
CATTTTAATTTCACGATTTTGGCAAGGTGAAATAGACTGCTAGGTATTAC
AAGGTACTTTTCCAGAGTTATTTAGCCATATTTTCCTTGGTGACCAGCTT
CCAAATAGGAGGTAGAGGTCCCTTTTTTCTTCAGAAAAAGAAAAAAGTTG
GTACCTTAAACTATCTAAGATATCTATTACAAATCTTTTTGAAAATCAGG
TTTATTACCCCCTGTTGCAATAATATTTCTACTAAAACAGCTATGGTATA
GCTGGAGTTTGTTTTATTGAAAGAACGGGCTAATTATAGTGACATCCCTT
TATTTGAATTGGATGAATAAAACGTTTTAATTATTTTTTTTAACCGTTGC
TTTTTTCTTCAATTTTAGAAACTAAAGGCAGCAATGAAGAATGAGCAGAA
AGGGACTTTTATCAACACTGGAAAGACAGGAGGATGGAAAAACAAACTCA
CTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGAAATGGTTGAAA
GACACTGGATTGTTGTTTGTTTACGAAGTTTGATTTTTTTAACACATAAT
AATGTTTTTCATCACACATAAACTTAAGCAATTTTACGAAAATCATAGTT
TTTATATTTTTTTAATTTTTATAGAAATTTTAAAAAGTTGTGCTTCTATT
ATAAACTGGGCTTAGATTGATGTTACAC

Coding sequence (CDS) from alignment at sc0000100_pilon:373657..382134-

>MSTRG.12921.56.p1 ID=MSTRG.12921.56.p1|Name=MSTRG.12921.56.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000100_pilon:373657..382134- (Clytia hemisphaerica_ch_hm2_pilon)
AAACTAAAGGCAGCAATGAAGAATGAGCAGAAAGGGACTTTTATCAACAC
TGGAAAGACAGGAGGATGGAAAAACAAACTCACTGAAGAAACTATTGAGA
GGTTTAAAAAATGGGAAGAGAAATGGTTGAAAGACACTGGATTGTTGTTT
GTTTACGAAGTTTGAGTGTCATCAAACGAGTGGCCAAGTTTATTGGTAAA
GAGGAATATTCAGATGGTCAAATAGCAAAACTTGTAGAGCATACATCTGT
GGATAAAATGAGAGCCAATCCAATGGTCAATGTGACTGGACCAATTGATA
TGATCAATGTAATACGAAACCCACGTGATGTTTGTGTATCATTTCTCAAC
CATCATGTTCTGACAGAAAACTACACTGGTGATTTACAAACCATCGCAGA
GATTATGTTACAGGATGTAGGACCTATCTATGCACCTTTCTTTACACATA
TCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTTTTGATTGTTCAC
TATGAAGAGATGCAAAAGGATGTAACTGAAACTAAAGGCAGCAATGAAGA
ATGAGCAGAAAGGGACTTTTATCAACACTGGAAAGACAGGAGGATGGAAA
AACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGAA
ATGGTTGAAAGACACTGGATTGTTGTTTGTTTACGAAGTTTGAGTGTCAT
CAAACGAGTGGCCAAGTTTATTGGTAAAGAGGAATATTCAGATGGTCAAA
TAGCAAAACTTGTAGAGCATACATCTGTGGATAAAATGAGAGCCAATCCA
ATGGTCAATGTGACTGGACCAATTGATATGATCAATGTAATACGAAACCC
ACGTGATGTTTGTGTATCATTTCTCAACCATCATGTTCTGACAGAAAACT
ACACTGGTGATTTACAAACCATCGCAGAGATTATGTTACAGGATGTAGGA
CCTATCTATGCACCTTTCTTTACACATATCCTGAGCTACTGGAACCAACG
AGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAGGATG
TAACTGAAACTAAAGGCAGCAATGAAGAATGAGCAGAAAGGGACTTTTAT
CAACACTGGAAAGACAGGAGGATGGAAAAACAAACTCACTGAAGAAACTA
TTGAGAGGTTTAAAAAATGGGAAGAGAAATGGTTGAAAGACACTGGATTG
TTGTTTGTTTACGAAGTTTGAGTGTCATCAAACGAGTGGCCAAGTTTATT
GGTAAAGAGGAATATTCAGATGGTCAAATAGCAAAACTTGTAGAGCATAC
ATCTGTGGATAAAATGAGAGCCAATCCAATGGTCAATGTGACTGGACCAA
TTGATATGATCAATGTAATACGAAACCCACGTGATGTTTGTGTATCATTT
CTCAACCATCATGTTCTGACAGAAAACTACACTGGTGATTTACAAACCAT
CGCAGAGATTATGTTACAGGATGTAGGACCTATCTATGCACCTTTCTTTA
CACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTTTTGATT
GTTCACTATGAAGAGATGCAAAAGGATGTAACTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12921MSTRG.12921Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.56.p1.exon3MSTRG.12921.56.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.56.p1.exon2MSTRG.12921.56.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.56.p1.exon1MSTRG.12921.56.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.56.p1MSTRG.12921.56.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:373657..382134 -