MSTRG.12921.39.p1 (mRNA) -

Overview
NameMSTRG.12921.39.p1
Unique NameMSTRG.12921.39.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:350528..353813-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12921.39.p1 ID=MSTRG.12921.39.p1|Name=MSTRG.12921.39.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3286bp|location=Sequence derived from alignment at sc0000100_pilon:350528..353813- (Clytia hemisphaerica_ch_hm2_pilon)
ACTGAAGAAGGGTTTTTCACTCAAATGGTTCACAAGAAAATTACCCTAAG
CGAAATTAAGTATAGATAATATTTACACGTCTTACTCTACGAACGATCCC
TATAAAGCAATTTAAAATTAGATTTAAACAAAAAAAGAACAATGGAAATT
AAACAAATACCAATCAACAATGAAGATTTGCAGAGGTTTAGCAGCCATTG
TCATAAATATAAAGATCATCCGTTGAGTATGTTGGAACCATACCATCAAG
TCTTTCCATCTTTTTATATGGATCACCACAAATCATTTCAAGAAGCTGAA
GTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAAATCAGGTAGACT
TAATGGGTGCTTATTTTGTGTATTTACAGCTTGAATTACAAACTTTTCCC
ATATGAAAAATAATTTACCCTTTTATCAGTTTATCCCGACTCTCCTTTGA
CATGTTTGGGATTGATCTTTGTAAATGAAACCTTTTTACTTCACGAGTGC
ATATTGAAGCCAGCATCTTAGGTATGTGAAGCTTTAAATAAGTGAAACCA
ATTACTGTCAGGTTTTACTATTACAGCAAAACTATAATTATCTAAAGTAT
TTGTAGATGTTTTGAATTTAGGAAAACGATGATTTAGAGGAACCAAATAT
ATGTTCAATTCCAAATTCCAATATAAGAGAGATCAAACCATTAGTATTTC
TAAAGGATTTACTCTTCTTTACTTTTCCAGGAACCCGCTGGATGCAAGAA
ATTGTCTCTTGTCTGAGGAATGGCTTGGATTTTGAGAAAGCAAAATCAAG
TCCTCTAGACTTAAGAGTACCTTTCTTTGAGTAAATATCTTTTTTTTATA
TTTAGAAGTATTGGCTGAAATTCTTGGGCTGAACTAAATAGGAAATATCA
AAACTGAAGATAAGATTGAAATAGATATTCAAAAGATTAACAGAATGATA
ATCAACTCAACTTTCTTTGTAGGCAATAAGTATCAATGGTCTAAAATAAA
TAATCTTTTCTCATTTTAGTTTTTCAGCCGCCTCTAATAGGGTAGAAAAG
GTACTCAAAGCTGCAGGTTCTTCTTGCAAAACAGGAGCTGAACTTGTTAA
TCATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCTATGAAATGT
TGCCTCCAAAGATTCATGAAAAAGGTGCCAAGGTACCAGAACTTGTTTTT
AGTTGATAAAGGGATTCGATTGAAATAGTTTGATTTTTTTATGTTAAAAA
TTCCCTGATTTTGATTTTTTAACCAATGCAATGATTTCTATTCAGATGAT
CAATGTAATACGAAACCCACGCGATGTTTGTGTATCATTTCTCAACCATC
ATGTTCTAACTACTAACTACACTGGTGATTTACAAACCATCGCAGAGATC
ATGTTACAGGATGTAGGACCTGTCAATGCACCCTTCTTTACACATATCCT
GAGCTACTGGAACCAACGAGAAAATCCAAATCTTTTGATTGTTCACTATG
AAGAGATGCAAAAGGATATAACTGGTGAAAATTTCTTTTGAATTTGTTTT
TAATGAGGTCTAATTTTAACAATTTAGCAGGCCATGATAATGTTAAAATC
CAAAATCGTTACATAGGTGTTTCAGGTAAGAATCCAGAATGGGTTGAATA
CACTTATTACCCTTAGCGGAAATACTTGGAAAAGTCTTGGCATCAAATTA
AAAAGTACTCTTGTGAAAATTTAAGATAACTTAGTAGATTGAAATTTTTA
ACCATTTTCCAGGTGTGATCAAACGAGTGGCCAAGTTTATTGGTACAGAG
GAATATTCAGATGATCAAATAGCAAAACTTGTAGAGCATACATCTGTGGA
TAAAATGAGAGCCAACCCAATGGTTAATGGGACTCGACCAATTGATGTAA
TTGTTTTTAAACCCATCAATTTCATAATGAGTCTGAGTAAAAGTTCTTTA
TGGATATTTTTAATCAAAGATTTTTACAATCAGGGGGAGTGTACAGCTGC
AGGGTACAGACCCACAGCCAGGTGGACTGATGGTGTCTAATTTTGAATTT
CATTTATTACCAGGTTCTATATTTGGGGTGGGTGGGCCATTTCAACTCAT
TTCAAGCAAGCATCTGGTACTGATTATAGTATTTAGTGGGTAAAATGGGT
AAAAATGGTAAAAATTTATCTGTTTTGGCAAATCAGAAAAAAATTCTGTA
AAAAATCAGATTTCATTTTAATTTCACGATTTTGGTGAGGTGAAATTGAC
TGCTAGGTATTACAAGGTACTTTTCCAGAGTTATTTAGCCATATTTTCCT
TTGTGACCAGCTTCCAAATAGGAGACGGAGATCCTTTTTTTCTACAAAAA
AAGTTGGTACCTTAAACTATATAAGATATCTAAAACAAATCGTTCTGAAA
ATCAGGTTAAGTACCATGTGGCTGTACCCCCTGTTGCAATGATATTTATA
GTAAAACAGCTATGGTATAGGTGGAGTTTGCTTTATTGAAAGAATGGGCT
AATTATATTGACATCCCTTTATTTGAATTGAATCAATAAAACGTTTTAAA
TGTTTTTTTAACCGTTCTTTCTTCAATTTTAAAAACTAAAGGCATCAATG
AAGAATGAGCAAAAAGGAAATTTTATCAACACTGGGAAAACAGGAGGATG
GAAAAACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAG
AGAAATGGTTGAAAGACACTGGATTGTTGTTTGCTTACGAAGTTTGATTT
TTTTATAACACATAAATTTTAGCAATTTTACGAAGATCATAGTTTTTATA
TTTTTATTTTTTTATAGAAATTTTAAAAAGTGCTTTCTATTATAAATTGG
GCTTAGATTGGTCTTACATTTTATTTTTTTAGATTCGTAAAAACCTTTCC
TCTAAAGGATACTTTTGTTTTACCATGCTCTCACAGGTGCCTAATTATGG
GGCTTTGCTTATTAATTTTTATACATCCCCCCCAAAAAATATTGATTTTT
ATTAAAGTTCACCACCTATACAGTGTGTCCCAAAAATGCAGATAAATTTT
AATGAAGAATGAGCAAAAGGGAAGTTTTATCAACACTGAGAAGACAGGAG
GATGGAAAACAAACTTTCTGAAGAAACTATTGAGAGGTTTAAAAAATGGG
AAGAGAAATGGTTGAAAGACACTGGATTGTTGTTTGCTTACGAAGTTTAA
TTTTTTTATCACACATAAATTTTAGCAATTTTACGAAAATCATAGTTTTT
ATATTTTTTTAATTTTTATAGAAATTTTAAAAAGTG

Coding sequence (CDS) from alignment at sc0000100_pilon:350528..353813-

>MSTRG.12921.39.p1 ID=MSTRG.12921.39.p1|Name=MSTRG.12921.39.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5904bp|location=Sequence derived from alignment at sc0000100_pilon:350528..353813- (Clytia hemisphaerica_ch_hm2_pilon)
GCATCAATGAAGAATGAGCAAAAAGGAAATTTTATCAACACTGGGAAAAC
AGGAGGATGGAAAAACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAA
AATGGGAAGAGAAATGGTTGAAAGACACTGGATTGTTGTTTGCTTACGAA
GTTTGAGTGTGATCAAACGAGTGGCCAAGTTTATTGGTACAGAGGAATAT
TCAGATGATCAAATAGCAAAACTTGTAGAGCATACATCTGTGGATAAAAT
GAGAGCCAACCCAATGGTTAATGGGACTCGACCAATTGATATGATCAATG
TAATACGAAACCCACGCGATGTTTGTGTATCATTTCTCAACCATCATGTT
CTAACTACTAACTACACTGGTGATTTACAAACCATCGCAGAGATCATGTT
ACAGGATGTAGGACCTGTCAATGCACCCTTCTTTACACATATCCTGAGCT
ACTGGAACCAACGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAG
ATGCAAAAGGATATAACTGTTTTTCAGCCGCCTCTAATAGGGTAGAAAAG
GTACTCAAAGCTGCAGGTTCTTCTTGCAAAACAGGAGCTGAACTTGTTAA
TCATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCTATGAAATGT
TGCCTCCAAAGATTCATGAAAAAGGTGCCAAGGAACCCGCTGGATGCAAG
AAATTGTCTCTTGTCTGAGGAATGGCTTGGATTTTGAGAAAGCAAAATCA
AGTCCTCTAGACTTAAGAGTACCTTTCTTTGAATGGAAATTAAACAAATA
CCAATCAACAATGAAGATTTGCAGAGGTTTAGCAGCCATTGTCATAAATA
TAAAGATCATCCGTTGAGTATGTTGGAACCATACCATCAAGTCTTTCCAT
CTTTTTATATGGATCACCACAAATCATTTCAAGAAGCTGAAGTTTATGAA
GATGATGTTTGGATTTGCACTTTCCCAAAATCAGGCATCAATGAAGAATG
AGCAAAAAGGAAATTTTATCAACACTGGGAAAACAGGAGGATGGAAAAAC
AAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGAAATG
GTTGAAAGACACTGGATTGTTGTTTGCTTACGAAGTTTGAGTGTGATCAA
ACGAGTGGCCAAGTTTATTGGTACAGAGGAATATTCAGATGATCAAATAG
CAAAACTTGTAGAGCATACATCTGTGGATAAAATGAGAGCCAACCCAATG
GTTAATGGGACTCGACCAATTGATATGATCAATGTAATACGAAACCCACG
CGATGTTTGTGTATCATTTCTCAACCATCATGTTCTAACTACTAACTACA
CTGGTGATTTACAAACCATCGCAGAGATCATGTTACAGGATGTAGGACCT
GTCAATGCACCCTTCTTTACACATATCCTGAGCTACTGGAACCAACGAGA
AAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAGGATATAA
CTGTTTTTCAGCCGCCTCTAATAGGGTAGAAAAGGTACTCAAAGCTGCAG
GTTCTTCTTGCAAAACAGGAGCTGAACTTGTTAATCATACACTTCGACCA
AGGACCATAAAAACCCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCA
TGAAAAAGGTGCCAAGGAACCCGCTGGATGCAAGAAATTGTCTCTTGTCT
GAGGAATGGCTTGGATTTTGAGAAAGCAAAATCAAGTCCTCTAGACTTAA
GAGTACCTTTCTTTGAATGGAAATTAAACAAATACCAATCAACAATGAAG
ATTTGCAGAGGTTTAGCAGCCATTGTCATAAATATAAAGATCATCCGTTG
AGTATGTTGGAACCATACCATCAAGTCTTTCCATCTTTTTATATGGATCA
CCACAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTT
GCACTTTCCCAAAATCAGGCATCAATGAAGAATGAGCAAAAAGGAAATTT
TATCAACACTGGGAAAACAGGAGGATGGAAAAACAAACTCACTGAAGAAA
CTATTGAGAGGTTTAAAAAATGGGAAGAGAAATGGTTGAAAGACACTGGA
TTGTTGTTTGCTTACGAAGTTTGAGTGTGATCAAACGAGTGGCCAAGTTT
ATTGGTACAGAGGAATATTCAGATGATCAAATAGCAAAACTTGTAGAGCA
TACATCTGTGGATAAAATGAGAGCCAACCCAATGGTTAATGGGACTCGAC
CAATTGATATGATCAATGTAATACGAAACCCACGCGATGTTTGTGTATCA
TTTCTCAACCATCATGTTCTAACTACTAACTACACTGGTGATTTACAAAC
CATCGCAGAGATCATGTTACAGGATGTAGGACCTGTCAATGCACCCTTCT
TTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTTTTG
ATTGTTCACTATGAAGAGATGCAAAAGGATATAACTGTTTTTCAGCCGCC
TCTAATAGGGTAGAAAAGGTACTCAAAGCTGCAGGTTCTTCTTGCAAAAC
AGGAGCTGAACTTGTTAATCATACACTTCGACCAAGGACCATAAAAACCC
ATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGAAAAAGGTGCCAAG
GAACCCGCTGGATGCAAGAAATTGTCTCTTGTCTGAGGAATGGCTTGGAT
TTTGAGAAAGCAAAATCAAGTCCTCTAGACTTAAGAGTACCTTTCTTTGA
ATGGAAATTAAACAAATACCAATCAACAATGAAGATTTGCAGAGGTTTAG
CAGCCATTGTCATAAATATAAAGATCATCCGTTGAGTATGTTGGAACCAT
ACCATCAAGTCTTTCCATCTTTTTATATGGATCACCACAAATCATTTCAA
GAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAAATC
AGGCATCAATGAAGAATGAGCAAAAAGGAAATTTTATCAACACTGGGAAA
ACAGGAGGATGGAAAAACAAACTCACTGAAGAAACTATTGAGAGGTTTAA
AAAATGGGAAGAGAAATGGTTGAAAGACACTGGATTGTTGTTTGCTTACG
AAGTTTGAGTGTGATCAAACGAGTGGCCAAGTTTATTGGTACAGAGGAAT
ATTCAGATGATCAAATAGCAAAACTTGTAGAGCATACATCTGTGGATAAA
ATGAGAGCCAACCCAATGGTTAATGGGACTCGACCAATTGATATGATCAA
TGTAATACGAAACCCACGCGATGTTTGTGTATCATTTCTCAACCATCATG
TTCTAACTACTAACTACACTGGTGATTTACAAACCATCGCAGAGATCATG
TTACAGGATGTAGGACCTGTCAATGCACCCTTCTTTACACATATCCTGAG
CTACTGGAACCAACGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAG
AGATGCAAAAGGATATAACTGTTTTTCAGCCGCCTCTAATAGGGTAGAAA
AGGTACTCAAAGCTGCAGGTTCTTCTTGCAAAACAGGAGCTGAACTTGTT
AATCATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCTATGAAAT
GTTGCCTCCAAAGATTCATGAAAAAGGTGCCAAGGAACCCGCTGGATGCA
AGAAATTGTCTCTTGTCTGAGGAATGGCTTGGATTTTGAGAAAGCAAAAT
CAAGTCCTCTAGACTTAAGAGTACCTTTCTTTGAATGGAAATTAAACAAA
TACCAATCAACAATGAAGATTTGCAGAGGTTTAGCAGCCATTGTCATAAA
TATAAAGATCATCCGTTGAGTATGTTGGAACCATACCATCAAGTCTTTCC
ATCTTTTTATATGGATCACCACAAATCATTTCAAGAAGCTGAAGTTTATG
AAGATGATGTTTGGATTTGCACTTTCCCAAAATCAGGCATCAATGAAGAA
TGAGCAAAAAGGAAATTTTATCAACACTGGGAAAACAGGAGGATGGAAAA
ACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGAAA
TGGTTGAAAGACACTGGATTGTTGTTTGCTTACGAAGTTTGAGTGTGATC
AAACGAGTGGCCAAGTTTATTGGTACAGAGGAATATTCAGATGATCAAAT
AGCAAAACTTGTAGAGCATACATCTGTGGATAAAATGAGAGCCAACCCAA
TGGTTAATGGGACTCGACCAATTGATATGATCAATGTAATACGAAACCCA
CGCGATGTTTGTGTATCATTTCTCAACCATCATGTTCTAACTACTAACTA
CACTGGTGATTTACAAACCATCGCAGAGATCATGTTACAGGATGTAGGAC
CTGTCAATGCACCCTTCTTTACACATATCCTGAGCTACTGGAACCAACGA
GAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAGGATAT
AACTGTTTTTCAGCCGCCTCTAATAGGGTAGAAAAGGTACTCAAAGCTGC
AGGTTCTTCTTGCAAAACAGGAGCTGAACTTGTTAATCATACACTTCGAC
CAAGGACCATAAAAACCCATCTCAGCTATGAAATGTTGCCTCCAAAGATT
CATGAAAAAGGTGCCAAGGAACCCGCTGGATGCAAGAAATTGTCTCTTGT
CTGAGGAATGGCTTGGATTTTGAGAAAGCAAAATCAAGTCCTCTAGACTT
AAGAGTACCTTTCTTTGAATGGAAATTAAACAAATACCAATCAACAATGA
AGATTTGCAGAGGTTTAGCAGCCATTGTCATAAATATAAAGATCATCCGT
TGAGTATGTTGGAACCATACCATCAAGTCTTTCCATCTTTTTATATGGAT
CACCACAAATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGAT
TTGCACTTTCCCAAAATCAGGCATCAATGAAGAATGAGCAAAAAGGAAAT
TTTATCAACACTGGGAAAACAGGAGGATGGAAAAACAAACTCACTGAAGA
AACTATTGAGAGGTTTAAAAAATGGGAAGAGAAATGGTTGAAAGACACTG
GATTGTTGTTTGCTTACGAAGTTTGAGTGTGATCAAACGAGTGGCCAAGT
TTATTGGTACAGAGGAATATTCAGATGATCAAATAGCAAAACTTGTAGAG
CATACATCTGTGGATAAAATGAGAGCCAACCCAATGGTTAATGGGACTCG
ACCAATTGATATGATCAATGTAATACGAAACCCACGCGATGTTTGTGTAT
CATTTCTCAACCATCATGTTCTAACTACTAACTACACTGGTGATTTACAA
ACCATCGCAGAGATCATGTTACAGGATGTAGGACCTGTCAATGCACCCTT
CTTTACACATATCCTGAGCTACTGGAACCAACGAGAAAATCCAAATCTTT
TGATTGTTCACTATGAAGAGATGCAAAAGGATATAACTGTTTTTCAGCCG
CCTCTAATAGGGTAGAAAAGGTACTCAAAGCTGCAGGTTCTTCTTGCAAA
ACAGGAGCTGAACTTGTTAATCATACACTTCGACCAAGGACCATAAAAAC
CCATCTCAGCTATGAAATGTTGCCTCCAAAGATTCATGAAAAAGGTGCCA
AGGAACCCGCTGGATGCAAGAAATTGTCTCTTGTCTGAGGAATGGCTTGG
ATTTTGAGAAAGCAAAATCAAGTCCTCTAGACTTAAGAGTACCTTTCTTT
GAATGGAAATTAAACAAATACCAATCAACAATGAAGATTTGCAGAGGTTT
AGCAGCCATTGTCATAAATATAAAGATCATCCGTTGAGTATGTTGGAACC
ATACCATCAAGTCTTTCCATCTTTTTATATGGATCACCACAAATCATTTC
AAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACTTTCCCAAAA
TCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12921MSTRG.12921Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.39.p1MSTRG.12921.39.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.39.p1.exon7MSTRG.12921.39.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.39.p1.exon6MSTRG.12921.39.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.39.p1.exon5MSTRG.12921.39.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.39.p1.exon4MSTRG.12921.39.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.39.p1.exon3MSTRG.12921.39.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.39.p1.exon2MSTRG.12921.39.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.39.p1.exon1MSTRG.12921.39.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:350528..353813 -