MSTRG.12921.1.p1 (mRNA) -

Overview
NameMSTRG.12921.1.p1
Unique NameMSTRG.12921.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:331092..335151-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12921.1.p1 ID=MSTRG.12921.1.p1|Name=MSTRG.12921.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4060bp|location=Sequence derived from alignment at sc0000100_pilon:331092..335151- (Clytia hemisphaerica_ch_hm2_pilon)
AAAAAAAACAATGGAAATTAAACAAATACCAATCAACAATGAATATTTGC
AGAGATTTAGCAGCCATTGTCATACATTTAAAGATCATCCCTTGAGTATG
TTGGAACCATACCATCGAGTCTTTCCATCATTATATAGGGATCACCACAA
ATCATTTCAAGAAGCTGAAGTTTATGAAGATGATGTTTGGATTTGCACTT
TCCCAAAATCAGGTAGACTTAATGGGTGCTTATTTTGTGTATTCACAACT
TGAATCACAAACTTATTCCATATGGCAAATAATGTACCCTTGTGTCAGTT
TAACCCGACTCTCCTTTGACATAGGTTTGGATTGATCTTTGTAAATAAAA
CCTTTTTACTTCGAATGCATATTGAAGCCGGCATGTGAAGGTATGTGAAG
CTCTTAATAAGTGAAACAAATTACTGTCAGGTTCTACTATTACCTGCTAT
TACAGCAAAACTATCATTGTCTAAAGTTTTTATAGATGTTTTGAATTTAG
GAAAACGATGATTTAGAGGAATAAAAAGGGTTCAATTCCAATATAAGAAA
GATCACATCATTAGTATTTCTAAAGGATTTAATATTCTTTACTTTTCCAG
GAACCCGCTGGATGCAAGAAATTGTCTCTTGTCTGAGGAATGGCATGGAT
TTTGAGAAAGCAAAATCAAGTTCTCTAGGCTTAAGAGTACCTTTTTTTGA
GTAAATATTTTTAATTTTTTTTATTTAGAAGTATTGGCTGAAATTTTTGG
GTTGAATTAAATGGGAAATATCAAAACTGAAGATAAGATTGAAATAGATT
TTCAAAAGATTAACTTTCTTTGTACCTTAAGGGAATAAATTAATGCGAGA
ATTAATTAATGCAGAATAAATTAATGCGGAATTAATTAATGAGAATTTGG
CCCTAATTCGCATTATTTAATTCTGCAATTCCTAACATTGGTCAATTCGC
ATTAATAAATTCCGCATTTTCAATAATTTTGCTGTGATTTTATCATGAAT
AAAGTTTAAAATGTGGCTCATTCGTATTAATTAATTCCGCAAAACATGAA
ATTTTTTAGGTGTCATTCGCATTAATTTATTTCGCATTAATTTATTCTTG
CATTAATTTATTCCCTTAAGGTAGTCAATAAGCATCAATGGTCACAATAC
ATAGTCTTTTTTCATTTTAGTTATTCAGCCGTCTCTAATAACGCAGAAAA
GGTACTCAAAGCTTATGGTTCTTCTTGCAAAACCGGAGCTGAACTTGTTA
ATCATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCTATGAAATG
TTGCCTCCAAAGATACATGAAAAAGGTGCCAAGGTACCAGAACTTATTTT
TAGCTGATAAAGGGATTCAATTGAAATAGTTTGATTTTTTTTATGTTAAA
AATCCCCTGATTTTGATTTTTTTTGGACCTACCCCGGTGGAGGTCCTATA
AATTAACCTGTGTTTGTTCGTCCGTCCGTTCGTTCGTTCGTCTGTTACCA
AATTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGG
TGCAAAATGGTGTTGGCCAAAATGTGACGGAGCCCGATTTTCTAAAAAAA
AATTTTTTGGGCCAATTTGGGCCAAAAAACGGCTAAAAAACGGGTTTTTT
AGACTTTGTGAAAAATTGGATCATTAATTTTTTCTGATTTTTTGTATGAA
AGTAGGGTACCATCATAGGTAAAAAATGGCTCAAGCAGATTTTTGCAAAA
AAATTTTGTTGGCTCAAAAAATGCATGTTTATCTATAAGAATCACTATTA
ATAAGCATACATCAATGTTCTTAGACAAATTACTCAATTTTTTTATCAGA
TAGATGTTTTTTTTGCTCATGAGGGCTTACTTTTAGAGAATATGTGTGTT
TAGACATGAAATTTTGGTTGCTTAGCGTGTTTTTATAGAAAAACTGGCCA
AATTCGATATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTT
TTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTTTGCACAAAGATG
CATAACTTTAAACCCTCAAATGTGATGGAGCCCGATTTTTGAAAAAAAAT
GTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAAAGGGTTTTTTGG
ACTTTGTGAAATATTGGATCATTGTTTTTTTCTGATTTTTTACATGAAAG
TAGGTAAAAGATGGCTCAAGCAGATTTTTGTGAAAAAAGAATTTTTCAGC
TCAAAAAACGCATCTTTATTTATAAGAATCACTATTAATAAGCATACATC
AATGTTATTAGCCATTTAATTACTCAATTTTTTAATGAGATAGATGTTTT
TTTTTGCTCAGGAAGTCTTGAATATGAAAGATTACTTCAAGAGCATAAAA
TTTTTGGTTTCTAAACGTTTTTTTATAAGAAACAAAGGACTAATTTTGAT
AGATCGTCACTATTTGTGTTCTGAATGATTGTTTAACGGTCATGCTCACG
TAGATATCAATTATATTTGTTAAATGCATAACCAGGTAGGTCCATAAAAG
TATCACTTGTTACCCATGCAATGATTTCTATTCAGATGATCAATGTAATA
CGAAACCCACGTGATGTTTGTGTATCATTTCTCAACCATTATGTTCTAAC
TAACAACTACACTGGTGATTTACAAACCATTGCAGAGATTATGTTACAGG
ATGTAGGACCTGTCAATGCACCCTTCTTTACACATATCCTGAGCTACTGG
GACCAACGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCA
AAAGGATATAACTGGTGAAAATTTCTTTTGAATTTTGTTTTTAATGAGGT
CAAAATCGTTACATAGGTGTTACAGGTAAGAATCCAAAATGAGTACACTT
ATTACCCTTAGCGGAAATACCTGGAAAAGTCTTGGCAACGGCGTCAAGTT
AAAAAGTGCTCTTGTGAAAATTTAAGATAACTTAGTGGATTGGAATTTTT
AACCATCTTCCAGGTGTGATCAAACGAGTGGCCAAGTTTATTGGTACAGA
GGAATATTCAGATGATCAAATAGCAAAACTTGTAGAGCATACATCTGTGG
ATAAAATGAGAGCCAACCCAATGGTCAATGGGACTGGTAAAATTGATGTA
ATTATTTTTAAACCCATCAATTTGATAATGAGTTTGAGTAAAAGTTAAAT
TCTTTATGGATATTTTTAATCAACTAGCCTTTTAAGATTTTTGCAATAAG
GGGGGGGGGTACAGCCGCAGGGTACAGACCCACAGCCAGGTGGTGGTGTC
TAATTTTGAATTTCATTTATTACCAGGTTCTATATTTGGGGTGGGAGGGC
CATTTCAACTCATTTCAAGCAAGTATCTGGTACTTATTTTGGTATTTGGT
GGGTAAAAATGGGTAAAAATGGTAAAAATTTACCAATTTTAGCAAATCAG
AAAATGATTCCATAAAAAATTAGATTTCATTTTAATTCAAAAATTCATTC
TAAAAATCAGAGTCAGTACCCTGTGGCTGTACAATGATATTTCTAGTAAA
ACAGCTATGGTATAGCTGGAGTTTGTTTTATTGAAAGAACAGCTAATTAT
AGTGACATCATTTATTTGAAATGAATGAATAAAACGTTTTAATTGTTTTT
TTAACCGTTGCTTCTTTCTTCAATTTTAGAAACTAAAGGCAACAATGAAG
AATGAGCAAAAAGGAAGTTTTATCAACACTGGGAAGACAGGAGGATGGAA
AAACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGA
AATGGTTGAAAGACACTGGATTGTTGTTTGTTTACGAAGTTTGATATTTT
TTTATCACACATTAATTTTTTTTATCACACATTAATTTTTTTTATCACAC
ATAAATTTTAGCAATTTTACGAAATTCATATCATATTTTTTTAATTTTTA
TAGAAATTTTAAAAAGTTGGGCTTCTATTATAAATTGGGCTTGGATTGAT
GTTACACTTTATTTTTTAGATTCGTAAAAACCTTTCCTCTCTAAAGGAGA
TTTTTATTTT

Coding sequence (CDS) from alignment at sc0000100_pilon:331092..335151-

>MSTRG.12921.1.p1 ID=MSTRG.12921.1.p1|Name=MSTRG.12921.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3900bp|location=Sequence derived from alignment at sc0000100_pilon:331092..335151- (Clytia hemisphaerica_ch_hm2_pilon)
AAACTAAAGGCAACAATGAAGAATGAGCAAAAAGGAAGTTTTATCAACAC
TGGGAAGACAGGAGGATGGAAAAACAAACTCACTGAAGAAACTATTGAGA
GGTTTAAAAAATGGGAAGAGAAATGGTTGAAAGACACTGGATTGTTGTTT
GTTTACGAAGTTTGAGTGTGATCAAACGAGTGGCCAAGTTTATTGGTACA
GAGGAATATTCAGATGATCAAATAGCAAAACTTGTAGAGCATACATCTGT
GGATAAAATGAGAGCCAACCCAATGGTCAATGGGACTGGTAAAATTGATA
TGATCAATGTAATACGAAACCCACGTGATGTTTGTGTATCATTTCTCAAC
CATTATGTTCTAACTAACAACTACACTGGTGATTTACAAACCATTGCAGA
GATTATGTTACAGGATGTAGGACCTGTCAATGCACCCTTCTTTACACATA
TCCTGAGCTACTGGGACCAACGAGAAAATCCAAATCTTTTGATTGTTCAC
TATGAAGAGATGCAAAAGGATATAACTGTTATTCAGCCGTCTCTAATAAC
GCAGAAAAGGTACTCAAAGCTTATGGTTCTTCTTGCAAAACCGGAGCTGA
ACTTGTTAATCATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCT
ATGAAATGTTGCCTCCAAAGATACATGAAAAAGGTGCCAAGATGCAAGAA
ATTGTCTCTTGTCTGAGGAATGGCATGGATTTTGAGAAAGCAAAATCAAG
TTCTCTAGGCTTAAGAGTACCTTTTTTTGAAAACTAAAGGCAACAATGAA
GAATGAGCAAAAAGGAAGTTTTATCAACACTGGGAAGACAGGAGGATGGA
AAAACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAG
AAATGGTTGAAAGACACTGGATTGTTGTTTGTTTACGAAGTTTGAGTGTG
ATCAAACGAGTGGCCAAGTTTATTGGTACAGAGGAATATTCAGATGATCA
AATAGCAAAACTTGTAGAGCATACATCTGTGGATAAAATGAGAGCCAACC
CAATGGTCAATGGGACTGGTAAAATTGATATGATCAATGTAATACGAAAC
CCACGTGATGTTTGTGTATCATTTCTCAACCATTATGTTCTAACTAACAA
CTACACTGGTGATTTACAAACCATTGCAGAGATTATGTTACAGGATGTAG
GACCTGTCAATGCACCCTTCTTTACACATATCCTGAGCTACTGGGACCAA
CGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAGGA
TATAACTGTTATTCAGCCGTCTCTAATAACGCAGAAAAGGTACTCAAAGC
TTATGGTTCTTCTTGCAAAACCGGAGCTGAACTTGTTAATCATACACTTC
GACCAAGGACCATAAAAACCCATCTCAGCTATGAAATGTTGCCTCCAAAG
ATACATGAAAAAGGTGCCAAGATGCAAGAAATTGTCTCTTGTCTGAGGAA
TGGCATGGATTTTGAGAAAGCAAAATCAAGTTCTCTAGGCTTAAGAGTAC
CTTTTTTTGAAAACTAAAGGCAACAATGAAGAATGAGCAAAAAGGAAGTT
TTATCAACACTGGGAAGACAGGAGGATGGAAAAACAAACTCACTGAAGAA
ACTATTGAGAGGTTTAAAAAATGGGAAGAGAAATGGTTGAAAGACACTGG
ATTGTTGTTTGTTTACGAAGTTTGAGTGTGATCAAACGAGTGGCCAAGTT
TATTGGTACAGAGGAATATTCAGATGATCAAATAGCAAAACTTGTAGAGC
ATACATCTGTGGATAAAATGAGAGCCAACCCAATGGTCAATGGGACTGGT
AAAATTGATATGATCAATGTAATACGAAACCCACGTGATGTTTGTGTATC
ATTTCTCAACCATTATGTTCTAACTAACAACTACACTGGTGATTTACAAA
CCATTGCAGAGATTATGTTACAGGATGTAGGACCTGTCAATGCACCCTTC
TTTACACATATCCTGAGCTACTGGGACCAACGAGAAAATCCAAATCTTTT
GATTGTTCACTATGAAGAGATGCAAAAGGATATAACTGTTATTCAGCCGT
CTCTAATAACGCAGAAAAGGTACTCAAAGCTTATGGTTCTTCTTGCAAAA
CCGGAGCTGAACTTGTTAATCATACACTTCGACCAAGGACCATAAAAACC
CATCTCAGCTATGAAATGTTGCCTCCAAAGATACATGAAAAAGGTGCCAA
GATGCAAGAAATTGTCTCTTGTCTGAGGAATGGCATGGATTTTGAGAAAG
CAAAATCAAGTTCTCTAGGCTTAAGAGTACCTTTTTTTGAAAACTAAAGG
CAACAATGAAGAATGAGCAAAAAGGAAGTTTTATCAACACTGGGAAGACA
GGAGGATGGAAAAACAAACTCACTGAAGAAACTATTGAGAGGTTTAAAAA
ATGGGAAGAGAAATGGTTGAAAGACACTGGATTGTTGTTTGTTTACGAAG
TTTGAGTGTGATCAAACGAGTGGCCAAGTTTATTGGTACAGAGGAATATT
CAGATGATCAAATAGCAAAACTTGTAGAGCATACATCTGTGGATAAAATG
AGAGCCAACCCAATGGTCAATGGGACTGGTAAAATTGATATGATCAATGT
AATACGAAACCCACGTGATGTTTGTGTATCATTTCTCAACCATTATGTTC
TAACTAACAACTACACTGGTGATTTACAAACCATTGCAGAGATTATGTTA
CAGGATGTAGGACCTGTCAATGCACCCTTCTTTACACATATCCTGAGCTA
CTGGGACCAACGAGAAAATCCAAATCTTTTGATTGTTCACTATGAAGAGA
TGCAAAAGGATATAACTGTTATTCAGCCGTCTCTAATAACGCAGAAAAGG
TACTCAAAGCTTATGGTTCTTCTTGCAAAACCGGAGCTGAACTTGTTAAT
CATACACTTCGACCAAGGACCATAAAAACCCATCTCAGCTATGAAATGTT
GCCTCCAAAGATACATGAAAAAGGTGCCAAGATGCAAGAAATTGTCTCTT
GTCTGAGGAATGGCATGGATTTTGAGAAAGCAAAATCAAGTTCTCTAGGC
TTAAGAGTACCTTTTTTTGAAAACTAAAGGCAACAATGAAGAATGAGCAA
AAAGGAAGTTTTATCAACACTGGGAAGACAGGAGGATGGAAAAACAAACT
CACTGAAGAAACTATTGAGAGGTTTAAAAAATGGGAAGAGAAATGGTTGA
AAGACACTGGATTGTTGTTTGTTTACGAAGTTTGAGTGTGATCAAACGAG
TGGCCAAGTTTATTGGTACAGAGGAATATTCAGATGATCAAATAGCAAAA
CTTGTAGAGCATACATCTGTGGATAAAATGAGAGCCAACCCAATGGTCAA
TGGGACTGGTAAAATTGATATGATCAATGTAATACGAAACCCACGTGATG
TTTGTGTATCATTTCTCAACCATTATGTTCTAACTAACAACTACACTGGT
GATTTACAAACCATTGCAGAGATTATGTTACAGGATGTAGGACCTGTCAA
TGCACCCTTCTTTACACATATCCTGAGCTACTGGGACCAACGAGAAAATC
CAAATCTTTTGATTGTTCACTATGAAGAGATGCAAAAGGATATAACTGTT
ATTCAGCCGTCTCTAATAACGCAGAAAAGGTACTCAAAGCTTATGGTTCT
TCTTGCAAAACCGGAGCTGAACTTGTTAATCATACACTTCGACCAAGGAC
CATAAAAACCCATCTCAGCTATGAAATGTTGCCTCCAAAGATACATGAAA
AAGGTGCCAAGATGCAAGAAATTGTCTCTTGTCTGAGGAATGGCATGGAT
TTTGAGAAAGCAAAATCAAGTTCTCTAGGCTTAAGAGTACCTTTTTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12921MSTRG.12921Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.1.p1MSTRG.12921.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12921.1.p1.exon5MSTRG.12921.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.1.p1.exon4MSTRG.12921.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.1.p1.exon3MSTRG.12921.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.1.p1.exon2MSTRG.12921.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12921.1.p1.exon1MSTRG.12921.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:331092..335151 -