MSTRG.12916.1.p1 (mRNA) -

Overview
NameMSTRG.12916.1.p1
Unique NameMSTRG.12916.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:269289..272288-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12916.1.p1 ID=MSTRG.12916.1.p1|Name=MSTRG.12916.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3000bp|location=Sequence derived from alignment at sc0000100_pilon:269289..272288- (Clytia hemisphaerica_ch_hm2_pilon)
TGTCATTTTATTGCTTGTATGAGAACGCAGCTTGTGTAAACGATCACTGT
TGGTTGGACAAAATCAATTCTTAAAATTTATCCTGAAAACTTCACATTTT
TACAACCACTCTTTAGTATATATTTTACATTTTAAGAATACATAAAATAA
GGAAACGTTGGACCGTTGAATCTTAAATGTGTCTGTTATTTGTGATATGG
TACTTCAGTTGGTAAGTTTATTTATTTGGGCTTTTTTGCCTGTCCAATCT
TCAATCAGAAGCAGCCGGCGGAGAGATTTTTTAGAAATATGTGTTCTTAT
CTTCTAGGAGACCAAATGTTATGACCTTTCAATTTTTGATACGAATGATG
TGTTCTGATTTCTAGGAAACCTTTGTCACACTATTAGTCTCCCTAAACTT
ATCACTACTTTATAATTTGACGTGTTCTAAAATCTAGGAAAACATCTTGG
CAAGATAAACTTGTATTACATTTGTTTTTCTCCACGAAAGATGTGTTCTA
TGTTATTTCTAGGGTTACTAGGCAACAAGATTACATCAATTTTCTCTTTA
TTATACCCCTGTCTCCTTAAAAGATGTGTTCTGAAGTTTTCTAGGGTTAC
CTAGACAACAAGAACACGTTAGATGACCTTAATTATACCCCTGTCTCGTC
AGAACACATCATTATTTCTAGCTGATTAATTTTCGAAGATCTGATCAGAA
CAGATCAAAATTTCTAGTTGAAATATGCTCTCAGAACACATCGGAAAAAA
AGGTCGCCTCGCCGGCTGCTTTCGTTCAATCTCCTTCCATCAAATCATCC
ATGTTTTTTTCGCATCAAATCAATCTTAAACACTACATATTCCAGGGGGT
GGACGAGCATTTCCAGTGGGTAATTGGAGAAGAATTTCCAGGGGGTACAA
AGGAGTAGTTTTTCATTTTTGCAGGGGGTAAAAAGATATTCTAAAATCTA
CAGGGGGTAAAAGACTGATTTTTGCTCATCCACCCTCACTTTTAAAGTAT
GAAAAGAATTTTTCCAAATATTGCCATTTCCATGGGGTATCTCTGAGAAT
CTTTTCTAGGCTTGAAAAGGTTCGTCCCCCCCCTGTATATGGAATTTTAA
TGGAACAGTCCATTAAGTAGGACCTCGTTGATTTTGATTTCGCTTAAGCG
CAAATGGCAACGTTGCTTTGAATGAATTGACTAAACAACCTTGCTAGAAT
CTGTCAATATTGATATGAAATGTGTTAAAATCTATTGTTTTAAATGGTCG
GCGATACTATTCAATTTCTATTCTAGTGTTATTACCACATTGCATGCGGC
CAGAATCGACCAGTATGGTTACCATGGAGATGCCAATGAACGCTTCTTAG
ATCAGGTGAGATGATTGTATTAAATACACACTTCTGAGAGCTGCCATGCT
TATAAAGAGTGAGAATTTCTCCAAAAGGTTACATTTCTGAGAGTCGATCT
CAGTACTGTACAGAGTTTTTGTGGAGAGCAGGTTTTAATGAAAATGTTTT
TCAAATTCAGATATACCCACGACAAAGTCAGCTCTACCGAACTACACCGA
GGGAGACCAAAGTCATGAACGCTTTCATAACACAACTCAAAACAAAATGC
AAGAATGACGTCATCTGTAAAACCTTACTGGAAAACATATTAGTAAACAG
TTTGACAAGAAATCTACAGTCAATGAGTCCAATCGGGGTAAAGTACCTTC
AACTGCACGATCCTGTAGAGAAACTTTACATTGCCATTTTGTCAGATCCT
GATCTCTACATGTACTTTAACCAAATGTTTGAACAACAAAATCCTTCAGG
CATTGTAGAAAATTGGGAAGAGTTCATCGTTCTTTTGAATTATGTGATGA
CATATCCACCACAGTATAATCGCTACAGTGATAGCTTTTTGTTGTGTTGT
CCCATAAATGCTCTCCTAGACTGGCCTTCATCGACACCTGCGGGCCGTGC
GTGCTTCCTGCACGAAAATCTCAACAAACTTGCTAAAGACATTCTAAACT
ACTGGGGTAAATACCTTCAAAGTGAGGCTTCGACAACTTTTTTGAGTGAC
TCGTTAAACGGATGGTTCAGTAGTGTAGCTCTTGAGGCGATGAAAGATTG
GCATGGCAGAACATTTCAACAACAATTCGTATGTGATCCAATGAAACCAC
ATTGGGGATTTCAAAGTTGGGATGATTTCTTCACCAGAAAGTTTCGGGAA
GGGATGCGACCTCTTCCATATCCAGACAGTTCAAAGTTTATCACAAACGC
TTGTGAATCAGTACCCATTAAGATTGCCAGAGATGTCAAAGCCAGAGATA
TGTTTTGGATCAAGGAACAACCCTACTCCCTTTCTCATATGCTCAACAAT
AACAAATTACACAAATACTTCATAGGAGGAACAGTGTACCAAGGTTTCTT
AAGCACCAATGCTTACCATCGCTGGCATAGTCCAATCTCTGGGACCATTA
TTGATTATGAACATATTGAAGGTGCTTACTTTTCACAAGCATACAGTGTT
GATGGTGACTCACATGCACCTGTTAAGTCTCAAAGCTATTTAAGTCAAGT
CGCAGCTCGTGCAGCTATTTACATTTTAGCAGATGATCCTGAAATAGGCG
TCATTTGTTTTCTCTCCATCGGCATGGTAGAAATCTCTTCGAATGAAATA
ACAGTTCAAAAAGGACAACATGTTGACAAAGGGGATGAATTAGGGATGTT
TCATTATGGTGGTTCGTCTCACTGTTTGATATTCCCACCCCATCTAGATG
TTGTGTTTGATGTTGTCCCAACTGATGTCTCGCACGAAATGCTACTGTTA
CGGGAACCTAATATTCATGTTCGAAGCAAAATTGCCACCGTTCGATTGAA
AACTCAACATCATGGAAAGGTTGCTAGTGAAGAGTTGAGAAGATATACAG
TGGAAACTGTTTATAGAAAGCCTTAAGGGCTCTGACCATAGTCAGAAAAT
TGATTTTAGTATCTGAACATAAAAGTTATGTTTTAGATTCTTTAACACTT

Coding sequence (CDS) from alignment at sc0000100_pilon:269289..272288-

>MSTRG.12916.1.p1 ID=MSTRG.12916.1.p1|Name=MSTRG.12916.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4590bp|location=Sequence derived from alignment at sc0000100_pilon:269289..272288- (Clytia hemisphaerica_ch_hm2_pilon)
ATATACCCACGACAAAGTCAGCTCTACCGAACTACACCGAGGGAGACCAA
AGTCATGAACGCTTTCATAACACAACTCAAAACAAAATGCAAGAATGACG
TCATCTGTAAAACCTTACTGGAAAACATATTAGTAAACAGTTTGACAAGA
AATCTACAGTCAATGAGTCCAATCGGGGTAAAGTACCTTCAACTGCACGA
TCCTGTAGAGAAACTTTACATTGCCATTTTGTCAGATCCTGATCTCTACA
TGTACTTTAACCAAATGTTTGAACAACAAAATCCTTCAGGCATTGTAGAA
AATTGGGAAGAGTTCATCGTTCTTTTGAATTATGTGATGACATATCCACC
ACAGTATAATCGCTACAGTGATAGCTTTTTGTTGTGTTGTCCCATAAATG
CTCTCCTAGACTGGCCTTCATCGACACCTGCGGGCCGTGCGTGCTTCCTG
CACGAAAATCTCAACAAACTTGCTAAAGACATTCTAAACTACTGGGGTAA
ATACCTTCAAAGTGAGGCTTCGACAACTTTTTTGAGTGACTCGTTAAACG
GATGGTTCAGTAGTGTAGCTCTTGAGGCGATGAAAGATTGGCATGGCAGA
ACATTTCAACAACAATTCGTATGTGATCCAATGAAACCACATTGGGGATT
TCAAAGTTGGGATGATTTCTTCACCAGAAAGTTTCGGGAAGGGATGCGAC
CTCTTCCATATCCAGACAGTTCAAAGTTTATCACAAACGCTTGTGAATCA
GTACCCATTAAGATTGCCAGAGATGTCAAAGCCAGAGATATGTTTTGGAT
CAAGGAACAACCCTACTCCCTTTCTCATATGCTCAACAATAACAAATTAC
ACAAATACTTCATAGGAGGAACAGTGTACCAAGGTTTCTTAAGCACCAAT
GCTTACCATCGCTGGCATAGTCCAATCTCTGGGACCATTATTGATTATGA
ACATATTGAAGGTGCTTACTTTTCACAAGCATACAGTGTTGATGGTGACT
CACATGCACCTGTTAAGTCTCAAAGCTATTTAAGTCAAGTCGCAGCTCGT
GCAGCTATTTACATTTTAGCAGATGATCCTGAAATAGGCGTCATTTGTTT
TCTCTCCATCGGCATGGTAGAAATCTCTTCGAATGAAATAACAGTTCAAA
AAGGACAACATGTTGACAAAGGGGATGAATTAGGGATGTTTCATTATGGT
GGTTCGTCTCACTGTTTGATATTCCCACCCCATCTAGATGTTGTGTTTGA
TGTTGTCCCAACTGATGTCTCGCACGAAATGCTACTGTTACGGGAACCTA
ATATTCATGTTCGAAGCAAAATTGCCACCGTTCGATTGAAAACTCAACAT
CATGGAAAGGTTGCTAGTGAAGAGTTGAGAAGATATACAGTGGAAACTGT
TTATAGAAAGCCTTAATGTTATTACCACATTGCATGCGGCCAGAATCGAC
CAGTATGGTTACCATGGAGATGCCAATGAACGCTTCTTAGATCAGATGTG
TCTGTTATTTGTGATATGGTACTTCAGTTGATATACCCACGACAAAGTCA
GCTCTACCGAACTACACCGAGGGAGACCAAAGTCATGAACGCTTTCATAA
CACAACTCAAAACAAAATGCAAGAATGACGTCATCTGTAAAACCTTACTG
GAAAACATATTAGTAAACAGTTTGACAAGAAATCTACAGTCAATGAGTCC
AATCGGGGTAAAGTACCTTCAACTGCACGATCCTGTAGAGAAACTTTACA
TTGCCATTTTGTCAGATCCTGATCTCTACATGTACTTTAACCAAATGTTT
GAACAACAAAATCCTTCAGGCATTGTAGAAAATTGGGAAGAGTTCATCGT
TCTTTTGAATTATGTGATGACATATCCACCACAGTATAATCGCTACAGTG
ATAGCTTTTTGTTGTGTTGTCCCATAAATGCTCTCCTAGACTGGCCTTCA
TCGACACCTGCGGGCCGTGCGTGCTTCCTGCACGAAAATCTCAACAAACT
TGCTAAAGACATTCTAAACTACTGGGGTAAATACCTTCAAAGTGAGGCTT
CGACAACTTTTTTGAGTGACTCGTTAAACGGATGGTTCAGTAGTGTAGCT
CTTGAGGCGATGAAAGATTGGCATGGCAGAACATTTCAACAACAATTCGT
ATGTGATCCAATGAAACCACATTGGGGATTTCAAAGTTGGGATGATTTCT
TCACCAGAAAGTTTCGGGAAGGGATGCGACCTCTTCCATATCCAGACAGT
TCAAAGTTTATCACAAACGCTTGTGAATCAGTACCCATTAAGATTGCCAG
AGATGTCAAAGCCAGAGATATGTTTTGGATCAAGGAACAACCCTACTCCC
TTTCTCATATGCTCAACAATAACAAATTACACAAATACTTCATAGGAGGA
ACAGTGTACCAAGGTTTCTTAAGCACCAATGCTTACCATCGCTGGCATAG
TCCAATCTCTGGGACCATTATTGATTATGAACATATTGAAGGTGCTTACT
TTTCACAAGCATACAGTGTTGATGGTGACTCACATGCACCTGTTAAGTCT
CAAAGCTATTTAAGTCAAGTCGCAGCTCGTGCAGCTATTTACATTTTAGC
AGATGATCCTGAAATAGGCGTCATTTGTTTTCTCTCCATCGGCATGGTAG
AAATCTCTTCGAATGAAATAACAGTTCAAAAAGGACAACATGTTGACAAA
GGGGATGAATTAGGGATGTTTCATTATGGTGGTTCGTCTCACTGTTTGAT
ATTCCCACCCCATCTAGATGTTGTGTTTGATGTTGTCCCAACTGATGTCT
CGCACGAAATGCTACTGTTACGGGAACCTAATATTCATGTTCGAAGCAAA
ATTGCCACCGTTCGATTGAAAACTCAACATCATGGAAAGGTTGCTAGTGA
AGAGTTGAGAAGATATACAGTGGAAACTGTTTATAGAAAGCCTTAATGTT
ATTACCACATTGCATGCGGCCAGAATCGACCAGTATGGTTACCATGGAGA
TGCCAATGAACGCTTCTTAGATCAGATGTGTCTGTTATTTGTGATATGGT
ACTTCAGTTGATATACCCACGACAAAGTCAGCTCTACCGAACTACACCGA
GGGAGACCAAAGTCATGAACGCTTTCATAACACAACTCAAAACAAAATGC
AAGAATGACGTCATCTGTAAAACCTTACTGGAAAACATATTAGTAAACAG
TTTGACAAGAAATCTACAGTCAATGAGTCCAATCGGGGTAAAGTACCTTC
AACTGCACGATCCTGTAGAGAAACTTTACATTGCCATTTTGTCAGATCCT
GATCTCTACATGTACTTTAACCAAATGTTTGAACAACAAAATCCTTCAGG
CATTGTAGAAAATTGGGAAGAGTTCATCGTTCTTTTGAATTATGTGATGA
CATATCCACCACAGTATAATCGCTACAGTGATAGCTTTTTGTTGTGTTGT
CCCATAAATGCTCTCCTAGACTGGCCTTCATCGACACCTGCGGGCCGTGC
GTGCTTCCTGCACGAAAATCTCAACAAACTTGCTAAAGACATTCTAAACT
ACTGGGGTAAATACCTTCAAAGTGAGGCTTCGACAACTTTTTTGAGTGAC
TCGTTAAACGGATGGTTCAGTAGTGTAGCTCTTGAGGCGATGAAAGATTG
GCATGGCAGAACATTTCAACAACAATTCGTATGTGATCCAATGAAACCAC
ATTGGGGATTTCAAAGTTGGGATGATTTCTTCACCAGAAAGTTTCGGGAA
GGGATGCGACCTCTTCCATATCCAGACAGTTCAAAGTTTATCACAAACGC
TTGTGAATCAGTACCCATTAAGATTGCCAGAGATGTCAAAGCCAGAGATA
TGTTTTGGATCAAGGAACAACCCTACTCCCTTTCTCATATGCTCAACAAT
AACAAATTACACAAATACTTCATAGGAGGAACAGTGTACCAAGGTTTCTT
AAGCACCAATGCTTACCATCGCTGGCATAGTCCAATCTCTGGGACCATTA
TTGATTATGAACATATTGAAGGTGCTTACTTTTCACAAGCATACAGTGTT
GATGGTGACTCACATGCACCTGTTAAGTCTCAAAGCTATTTAAGTCAAGT
CGCAGCTCGTGCAGCTATTTACATTTTAGCAGATGATCCTGAAATAGGCG
TCATTTGTTTTCTCTCCATCGGCATGGTAGAAATCTCTTCGAATGAAATA
ACAGTTCAAAAAGGACAACATGTTGACAAAGGGGATGAATTAGGGATGTT
TCATTATGGTGGTTCGTCTCACTGTTTGATATTCCCACCCCATCTAGATG
TTGTGTTTGATGTTGTCCCAACTGATGTCTCGCACGAAATGCTACTGTTA
CGGGAACCTAATATTCATGTTCGAAGCAAAATTGCCACCGTTCGATTGAA
AACTCAACATCATGGAAAGGTTGCTAGTGAAGAGTTGAGAAGATATACAG
TGGAAACTGTTTATAGAAAGCCTTAATGTTATTACCACATTGCATGCGGC
CAGAATCGACCAGTATGGTTACCATGGAGATGCCAATGAACGCTTCTTAG
ATCAGATGTGTCTGTTATTTGTGATATGGTACTTCAGTTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12916MSTRG.12916Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12916.1.p1MSTRG.12916.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12916.1.p1.exon3MSTRG.12916.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12916.1.p1.exon2MSTRG.12916.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12916.1.p1.exon1MSTRG.12916.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:269289..272288 -