MSTRG.1290.4.p1 (mRNA) -

Overview
NameMSTRG.1290.4.p1
Unique NameMSTRG.1290.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1342371..1344216-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1290.4.p1 ID=MSTRG.1290.4.p1|Name=MSTRG.1290.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1846bp|location=Sequence derived from alignment at sc0000006_pilon:1342371..1344216- (Clytia hemisphaerica_ch_hm2_pilon)
ATCGAACGAAAAGATGTTTCAGTTTACTTATGTCTTTTTTCTGACCAAAA
ATTTCGAATCCTAGACTATTTTATTTACTCTTTTTTACAAGACTCATTTC
GGTCATTTCTAAAAAAAGTAGCTATCTTTGACAAGGCAGAAAACATTCGG
AGATATAAAAACTTTTAAAATACAAGCATAATCTAATTCTTCATCCTCTC
CTCTTTCCAAAAATGTATAATAATGATATGGTTCCAACAGAAAGTCATGT
GGCATTTTGGCTTTTAAAATCGGTAGTACGGCTTTGGGTTTTCCGCCTAA
CATTCGAATGTATGTTTTGATCAGAGGAAAACCCTCATTATTGCGTGTAT
AAAACCGAACAAATACCGACGGAATATTACAGTGGAAAGCCAGAGCTTTC
TCGTTCTGTATAATGATCATATGGTTATTACGGGAGAACCAATGGCATTT
TCGGCCTGAACATGAGGCTATTTCAATTGACGTCGGATCGTCTTAGAAAT
TAAATAAACAAAACCTTCGAAAAAGAAAAGTGACGCCAAGCGAAGTATAT
AAATTTGTTGAGTGCGTTTAACGTTTTTCTTCTTTACAAATAAAATTCAA
TAAAGAAATATGGCTTTCAATAATTCGATTAATTATACGAACGGTTCAAA
GGTTGACCAAAGAAAACCCACTGTAGAGGTTAGAGGTGATTTGGCGGTAT
ATGCAACGACGTTGACGTATGTAGAGGCAAAGGGGTACTTTGAAGGGCTT
CTTAGAAAAATTGGATTTAGTGTCGAGATTGATGAACGAATTTATAGATG
TATTTACTCGCTCGGCAAAAAGCTGCGGTTACAAATAAAGGGGAAAAGTT
CTGTCAAAAGAAGGATGGTAAAAGAGAAGTGGCACTTTTTTACACCAACC
AATGCTGGAAGAATGGAACCACCTTCAACGCCCGAGGTAAATCCGATTCG
TATACCGTTGAGTGAACCTTATTGGGTCATGTGAAAGGTTGGGGATTTTT
ATTAGGTCCCCCCCCGTTTATCAAATACCTTAGATTAAATAGATCTGTCG
ACAATCTTAAGCCCCACCCACCATGACTTTGAAAAAAAAGATTTTTGTCC
ACTCTACGCATCGAACTAAAAATTTCTATTTCTAATATCAGCCACGAGAC
ACGAAGAAACTCAAACATTTCGCCGACCTCGGAAAACGTCAACAACAAAG
GAGAATATCTCAAATAAAGTAGGAATTCTTCTTTTAGAGCAACATTTATT
ACCAATTTTGATAAGGAAAATGCACCGTAAGACCAAGGACTGAACGTTTA
ACTTTATTTGCTTTTAGGTCAGCTATGACTGAAACGGCGGAAAAATCTGG
TCTTGTACCACAAGAGATAAAACTATTGACACCATCGCGGACAAAGATTT
CCCTTAAATTTTCTGGTAAGTTTGCTGTAGGGATAAGGAGAACAAAGGGA
TAATCTGGGTCGGGTGTAAGGGAGTATATAATAACAGAATGGAGAGACAA
TGCTAATATATTTTATTTCATAATTGTATTCAGGATCGCAGAATTCCAGT
CAAGGCGACGAGCCAACTTCCAGTCAAGGCGACGAGCCAACAACCAGTCA
AGGCGGCGAGCAAACATCCAGCCAAGAAGACAACGAACCAACAGCGAGTC
AAGAAGACGACGAACCAACAAATTTAGAAATCAATCCACTGGTTTGGAGA
AATGGTAACTTTTATTTGAACTGTAATTTGGATAGTAATCTTTAAACTCT
TCCGATGTGTTTCGTATGACTCGTCCATTCTTTGTAATTTGGATAGTAAT
CTTTAAACTCTTCCGAGGTGTTTCGTATGACTCGTCCATTCTTCTT

Coding sequence (CDS) from alignment at sc0000006_pilon:1342371..1344216-

>MSTRG.1290.4.p1 ID=MSTRG.1290.4.p1|Name=MSTRG.1290.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000006_pilon:1342371..1344216- (Clytia hemisphaerica_ch_hm2_pilon)
GTCAGCTATGACTGAAACGGCGGAAAAATCTGGTCTTGTACCACAAGAGA
TAAAACTATTGACACCATCGCGGACAAAGATTTCCCTTAAATTTTCTGGT
AAGTTTGCTGTAGGGATAAGGAGAACAAAGGGATAACCACGAGACACGAA
GAAACTCAAACATTTCGCCGACCTCGGAAAACGTCAACAACAAAGGAGAA
TATCTCAAATAAAATGGCTTTCAATAATTCGATTAATTATACGAACGGTT
CAAAGGTTGACCAAAGAAAACCCACTGTAGAGGTTAGAGGTGATTTGGCG
GTATATGCAACGACGTTGACGTATGTAGAGGCAAAGGGGTACTTTGAAGG
GCTTCTTAGAAAAATTGGATTTAGTGTCGAGATTGATGAACGAATTTATA
GATGTATTTACTCGCTCGGCAAAAAGCTGCGGTTACAAATAAAGGGGAAA
AGTTCTGTCAAAAGAAGGATGGTAAAAGAGAAGTGGCACTTTTTTACACC
AACCAATGCTGGAAGAATGGAACCACCTTCAACGCCCGAGGTCAGCTATG
ACTGAAACGGCGGAAAAATCTGGTCTTGTACCACAAGAGATAAAACTATT
GACACCATCGCGGACAAAGATTTCCCTTAAATTTTCTGGTAAGTTTGCTG
TAGGGATAAGGAGAACAAAGGGATAACCACGAGACACGAAGAAACTCAAA
CATTTCGCCGACCTCGGAAAACGTCAACAACAAAGGAGAATATCTCAAAT
AAAATGGCTTTCAATAATTCGATTAATTATACGAACGGTTCAAAGGTTGA
CCAAAGAAAACCCACTGTAGAGGTTAGAGGTGATTTGGCGGTATATGCAA
CGACGTTGACGTATGTAGAGGCAAAGGGGTACTTTGAAGGGCTTCTTAGA
AAAATTGGATTTAGTGTCGAGATTGATGAACGAATTTATAGATGTATTTA
CTCGCTCGGCAAAAAGCTGCGGTTACAAATAAAGGGGAAAAGTTCTGTCA
AAAGAAGGATGGTAAAAGAGAAGTGGCACTTTTTTACACCAACCAATGCT
GGAAGAATGGAACCACCTTCAACGCCCGAGGTCAGCTATGACTGAAACGG
CGGAAAAATCTGGTCTTGTACCACAAGAGATAAAACTATTGACACCATCG
CGGACAAAGATTTCCCTTAAATTTTCTGGTAAGTTTGCTGTAGGGATAAG
GAGAACAAAGGGATAACCACGAGACACGAAGAAACTCAAACATTTCGCCG
ACCTCGGAAAACGTCAACAACAAAGGAGAATATCTCAAATAAAATGGCTT
TCAATAATTCGATTAATTATACGAACGGTTCAAAGGTTGACCAAAGAAAA
CCCACTGTAGAGGTTAGAGGTGATTTGGCGGTATATGCAACGACGTTGAC
GTATGTAGAGGCAAAGGGGTACTTTGAAGGGCTTCTTAGAAAAATTGGAT
TTAGTGTCGAGATTGATGAACGAATTTATAGATGTATTTACTCGCTCGGC
AAAAAGCTGCGGTTACAAATAAAGGGGAAAAGTTCTGTCAAAAGAAGGAT
GGTAAAAGAGAAGTGGCACTTTTTTACACCAACCAATGCTGGAAGAATGG
AACCACCTTCAACGCCCGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1290MSTRG.1290Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1290.4.p1MSTRG.1290.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1290.4.p1.exon4MSTRG.1290.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1290.4.p1.exon3MSTRG.1290.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1290.4.p1.exon2MSTRG.1290.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1290.4.p1.exon1MSTRG.1290.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1342371..1344216 -