MSTRG.12899.1.p1 (mRNA) -

Overview
NameMSTRG.12899.1.p1
Unique NameMSTRG.12899.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000100_pilon:19385..23075-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12899.1.p1 ID=MSTRG.12899.1.p1|Name=MSTRG.12899.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3691bp|location=Sequence derived from alignment at sc0000100_pilon:19385..23075- (Clytia hemisphaerica_ch_hm2_pilon)
GCGAGTAGGAATTAGCAAGAGTTGACTGTATAACGAATGATAGATGCATA
TTCATAACAAATCCCTCAGTAGGACTGGGTATAAAGAAACACTCAGCTAA
GCTTTTCTTCCAGGAAACTCCCTTTTTCCTTTCATTGTTCAATTATATTT
GTATACATCTTTGCTATATTTTGAATTTGTTTTGAAAAATGTTTTAATTC
GGTTGAGTGAGTTTGTGCATCGAAGTAGAACTAATTGTTTTGTATACCTT
TAGCGACTTGTATGCAGCTAGATTTTCTGTTGCAGAAGTCTATGGACAAC
TGAAGTTGTTGTGCGTCTGTGGTGCACACATTTTTTTTTTTCATTTTCAC
TCACGTGGTAAGGTATTTTTGTAATCATTTTTCTTTAAAGGTTTTGTTTT
TAAATAAGGTTGATATATAGTTTGCTTACTCGTCAATTTTAATTCTCGAG
TTTTTACACATTAGATCGATACGAATGTGGAGCAAGATTGGTCAGAAATA
GGAAAAGAAACACATTTTTTGCTTATTTCAGCATAACATAACAAAAGGCA
AACACTGTCCTGATATGAAATATGTGTCTGATATGAAACGGGAACACTAA
TGTAAAAACAAAACCTTTAAATCGTGTCCACAACTTCAGATGACTTTTGA
TGTTAGGCGTTGCTATGGACACCAACATGGTACTTCTTTCGATTTCCCCT
TATTTTTGCCAATATTACAATTGATTTGTCCAACTTTGAATTATTATAAC
AGTTTTATTTTTTTAAGACCTGAATGACAGGACGTAAAAATGCATACAAA
ATGGACATTTCTGGGTAAGGATCTTTTCTAATACAATTGCTCAAGAATAT
GAATTTGACCTTGAGTCTAAATTTTCCAGGCTAGAAAATTCAATAGAATT
GATTCTCAGACGTTTCGAGGCTCTTTCTCTAAAATTTATGTCAGGTTTTC
AGTCAATTTTTTTCAAATTTTTCCAAATCATTATCTTTGTGTCTCATTTG
GTATATTTCTGTTTTTGCTTACCAAAATATTTGCCACGATGTTCAAAGAT
TGATTTAGTTTGGTATTCCTTTTCAGCTCTGATGATCGCAATAATAACGA
CAACACAAGGACAACATTACTCAAAACAAGAAAAAGGAATGTCGATTTCA
TTGTTCCAATTCGATCCAGCAACATTAGGGCTTTACAATCACGCCCAAGC
TAACCACATATCACACCACGGGCGTGGGCGCTTACCACTTCACGCCAACC
CACGCCGACGTAAAAAGACCAATGTCAAGCCACAAAAGCGAACGAAAAAT
CCTGATAAAATTTTCACGAATTCGACTGCTCAGTTTGCCAATAAAACAGA
TACAGTTAAACAGCTGAGCATGAATCCATCACCGAACCAAAATGACGCGA
AGGAGCATTTGACCAATGTTAAATTTGACAGCCTACTTAAAAATTCCTCA
TCTCTCATACAACCATCTAATATGACTCTCCTCTCTGGTCAAAATGCAAC
AAAAGCTAACACCACGAAAGAAAAACCTAAGGAAGAGTTGTTATTTTACC
GAAATAAGACCAATACAGGATCCACAGATAATTCAGAGAAAGTCAACAGC
GTTAAATTGACTAAAACAACTCCACCCGAAATTCACCAGGAAAATGTGCC
AATATTAAAGGAAGTCAATGCTACAATATCGAAAAATGCTACTTTAAACA
ACAAAGATAACACCTCGAATTTTACTTCAAACTATAGAAATTCAACGATG
AATCTAAGCAAAAATGCAACAGTATCGAATCCTCAGAACCATACTTTATC
TCAACCAGCAAATACTACATTAAACTTAAACAAGACAATCTCAGCTATAT
CGTCCGCTAAGTTTCTCCAGAACGAAACCACTGTATTTGATGTCGATTAC
AAACGCAAACGAAATGAAATTCTCGCTCAATACATCCCTTTGCATAACGT
ATCCAGAGCTGACCGCAATTCTTCGTTTCAAGCAGGCTCTAGGAAACATC
TCAAGCACCAAATGTTTCCAGAGTGTTATCGGTGTACAAAAAACTCTACT
TATCCAGAATGCGTACGGCAATCAAAAATCTTGAAATGTAATCAAGGCTT
GAATAATATTTGTTTCGCAAGATCACATAAGAAGAAAGACAATAATTTTA
TCACTTATGAAATGGGATGCACCAATCATAGGCAGTGCTTGAAAGCACGT
GCATTTCCTTGTAGAGGTTTGTTCCTATATCGATCAGTTCGGTGTTATCT
CTTTTATTTGGGACGTGTCATTATATACATTAAAAGTGAGGTTTTTTAAA
GGAAGTTTTTATTGGACGAATCTTAATTTGACATAATTCTTATTTCGTCC
AGTAAAAAGTGCGTAGCATGTAAAACTACATACCTTTTGGTAATTTATAT
ATTTTATGCATAATTTTCACGATCGAAAAAATATTGTTTAATTTCCAATG
GATTTTCCACATGTAGAAATATAAAAAGATTTGCTGATTAAATTTCTATT
TCTGGCGGGACTAATAAAAACGGGGAGCTCCCCTCCTCTTGAAAAAAACT
TGAAAATCTTCAGAGATGCCTTAAATTTAAAGAATTTAAACTGATAAACT
TATTTCAATTTCTTTTTGCAGATGGTTCAAAACGCTGTTTCACGTGTTGT
CAATTCAATAGATGCAATGCAAGTCCCCATCACGGTGTCTTCGAAACGGA
TGAGATTAATCTTGATGAACTGACAAAAGAAAAAGGAAAAGAGAAAAATG
CTTCGACGTTGAAAAAATGTAACAATGCACTGGTTGTCATGGCAACACTC
CTAATTTTCTTCCTACTCTCATAACCATCATATATATATTTGATGAATAA
TCATTGACATCTCAAAAGTCAAACTGTCAAATCGAGGTAATGGTAAACAG
TTTATCATGTTGTGACATATGGTATCGTTTGAATTCATTTTCTTTCTTGA
CCATCTCGTCCCGTTCTTTAATAACACAAATCAAGATTATAATTAGCATA
CCTCATTATTTTAAGAAATCAATGAAACATCATCTTTTCTGGGATTTACT
TTGTCGATTGGACAGCAATTTGATTCCACGACTGACTGATGTATTTATTG
ATCTCAAACAATCTGGCTCTAGTGCACGTTTGATATTTTATTACCTTCAA
GAAGCCTTTGCCATCGTAATAAGCCTTGTCACCAGGTCAAGAAAATGTGA
AGATTTCTCTTACTTTCTATGATCAGATTTAACATCGGTAACCAGATGGG
AGATTTAACCGTTACCAACTGATCAAAGAAAAAGGAAAATGAGATTGACT
GTCTCGCAAAGAACCCTGGAAACTCAAATAATAATAACGTAACAATTTTT
ATTGACTCCGTGTATTTTTAACTCAATACTGGAACGATAGTACTTCGATT
GTATTGGAACAAACTTGTATAATATAAAAACCAACAATGAAAATAACTGT
TTGGCTCGTGTGTTAGCAGGCCCGAAATAAATACATGAATGGCATTTTTT
TGACGTTTATCCAACGTCCACATCATCCATATGAATGGCATTATTTTAAA
TGACTTGATTTTTACAGATCTTTCATTATGTACCGTAAATTTTCTCTAAG
AACAAAAATAAATACGTTATCACAAATTATAAAATAATCATTTTTGCCTA
TTGGCTGTGATGCTCTTAGATTCTCCTATCTTTTGTTTGAG

Coding sequence (CDS) from alignment at sc0000100_pilon:19385..23075-

>MSTRG.12899.1.p1 ID=MSTRG.12899.1.p1|Name=MSTRG.12899.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4104bp|location=Sequence derived from alignment at sc0000100_pilon:19385..23075- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTCAAAACGCTGTTTCACGTGTTGTCAATTCAATAGATGCAATGCA
AGTCCCCATCACGGTGTCTTCGAAACGGATGAGATTAATCTTGATGAACT
GACAAAAGAAAAAGGAAAAGAGAAAAATGCTTCGACGTTGAAAAAATGTA
ACAATGCACTGGTTGTCATGGCAACACTCCTAATTTTCTTCCTACTCTCA
TAACTCTGATGATCGCAATAATAACGACAACACAAGGACAACATTACTCA
AAACAAGAAAAAGGAATGTCGATTTCATTGTTCCAATTCGATCCAGCAAC
ATTAGGGCTTTACAATCACGCCCAAGCTAACCACATATCACACCACGGGC
GTGGGCGCTTACCACTTCACGCCAACCCACGCCGACGTAAAAAGACCAAT
GTCAAGCCACAAAAGCGAACGAAAAATCCTGATAAAATTTTCACGAATTC
GACTGCTCAGTTTGCCAATAAAACAGATACAGTTAAACAGCTGAGCATGA
ATCCATCACCGAACCAAAATGACGCGAAGGAGCATTTGACCAATGTTAAA
TTTGACAGCCTACTTAAAAATTCCTCATCTCTCATACAACCATCTAATAT
GACTCTCCTCTCTGGTCAAAATGCAACAAAAGCTAACACCACGAAAGAAA
AACCTAAGGAAGAGTTGTTATTTTACCGAAATAAGACCAATACAGGATCC
ACAGATAATTCAGAGAAAGTCAACAGCGTTAAATTGACTAAAACAACTCC
ACCCGAAATTCACCAGGAAAATGTGCCAATATTAAAGGAAGTCAATGCTA
CAATATCGAAAAATGCTACTTTAAACAACAAAGATAACACCTCGAATTTT
ACTTCAAACTATAGAAATTCAACGATGAATCTAAGCAAAAATGCAACAGT
ATCGAATCCTCAGAACCATACTTTATCTCAACCAGCAAATACTACATTAA
ACTTAAACAAGACAATCTCAGCTATATCGTCCGCTAAGTTTCTCCAGAAC
GAAACCACTGTATTTGATGTCGATTACAAACGCAAACGAAATGAAATTCT
CGCTCAATACATCCCTTTGCATAACGTATCCAGAGCTGACCGCAATTCTT
CGTTTCAAGCAGGCTCTAGGAAACATCTCAAGCACCAAATGTTTCCAGAG
TGTTATCGGTGTACAAAAAACTCTACTTATCCAGAATGCGTACGGCAATC
AAAAATCTTGAAATGTAATCAAGGCTTGAATAATATTTGTTTCGCAAGAT
CACATAAGAAGAAAGACAATAATTTTATCACTTATGAAATGGGATGCACC
AATCATAGGCAGTGCTTGAAAGCACGTGCATTTCCTTGTAGAGATGCATA
CAAAATGGACATTTCTGGATGGTTCAAAACGCTGTTTCACGTGTTGTCAA
TTCAATAGATGCAATGCAAGTCCCCATCACGGTGTCTTCGAAACGGATGA
GATTAATCTTGATGAACTGACAAAAGAAAAAGGAAAAGAGAAAAATGCTT
CGACGTTGAAAAAATGTAACAATGCACTGGTTGTCATGGCAACACTCCTA
ATTTTCTTCCTACTCTCATAACTCTGATGATCGCAATAATAACGACAACA
CAAGGACAACATTACTCAAAACAAGAAAAAGGAATGTCGATTTCATTGTT
CCAATTCGATCCAGCAACATTAGGGCTTTACAATCACGCCCAAGCTAACC
ACATATCACACCACGGGCGTGGGCGCTTACCACTTCACGCCAACCCACGC
CGACGTAAAAAGACCAATGTCAAGCCACAAAAGCGAACGAAAAATCCTGA
TAAAATTTTCACGAATTCGACTGCTCAGTTTGCCAATAAAACAGATACAG
TTAAACAGCTGAGCATGAATCCATCACCGAACCAAAATGACGCGAAGGAG
CATTTGACCAATGTTAAATTTGACAGCCTACTTAAAAATTCCTCATCTCT
CATACAACCATCTAATATGACTCTCCTCTCTGGTCAAAATGCAACAAAAG
CTAACACCACGAAAGAAAAACCTAAGGAAGAGTTGTTATTTTACCGAAAT
AAGACCAATACAGGATCCACAGATAATTCAGAGAAAGTCAACAGCGTTAA
ATTGACTAAAACAACTCCACCCGAAATTCACCAGGAAAATGTGCCAATAT
TAAAGGAAGTCAATGCTACAATATCGAAAAATGCTACTTTAAACAACAAA
GATAACACCTCGAATTTTACTTCAAACTATAGAAATTCAACGATGAATCT
AAGCAAAAATGCAACAGTATCGAATCCTCAGAACCATACTTTATCTCAAC
CAGCAAATACTACATTAAACTTAAACAAGACAATCTCAGCTATATCGTCC
GCTAAGTTTCTCCAGAACGAAACCACTGTATTTGATGTCGATTACAAACG
CAAACGAAATGAAATTCTCGCTCAATACATCCCTTTGCATAACGTATCCA
GAGCTGACCGCAATTCTTCGTTTCAAGCAGGCTCTAGGAAACATCTCAAG
CACCAAATGTTTCCAGAGTGTTATCGGTGTACAAAAAACTCTACTTATCC
AGAATGCGTACGGCAATCAAAAATCTTGAAATGTAATCAAGGCTTGAATA
ATATTTGTTTCGCAAGATCACATAAGAAGAAAGACAATAATTTTATCACT
TATGAAATGGGATGCACCAATCATAGGCAGTGCTTGAAAGCACGTGCATT
TCCTTGTAGAGATGCATACAAAATGGACATTTCTGGATGGTTCAAAACGC
TGTTTCACGTGTTGTCAATTCAATAGATGCAATGCAAGTCCCCATCACGG
TGTCTTCGAAACGGATGAGATTAATCTTGATGAACTGACAAAAGAAAAAG
GAAAAGAGAAAAATGCTTCGACGTTGAAAAAATGTAACAATGCACTGGTT
GTCATGGCAACACTCCTAATTTTCTTCCTACTCTCATAACTCTGATGATC
GCAATAATAACGACAACACAAGGACAACATTACTCAAAACAAGAAAAAGG
AATGTCGATTTCATTGTTCCAATTCGATCCAGCAACATTAGGGCTTTACA
ATCACGCCCAAGCTAACCACATATCACACCACGGGCGTGGGCGCTTACCA
CTTCACGCCAACCCACGCCGACGTAAAAAGACCAATGTCAAGCCACAAAA
GCGAACGAAAAATCCTGATAAAATTTTCACGAATTCGACTGCTCAGTTTG
CCAATAAAACAGATACAGTTAAACAGCTGAGCATGAATCCATCACCGAAC
CAAAATGACGCGAAGGAGCATTTGACCAATGTTAAATTTGACAGCCTACT
TAAAAATTCCTCATCTCTCATACAACCATCTAATATGACTCTCCTCTCTG
GTCAAAATGCAACAAAAGCTAACACCACGAAAGAAAAACCTAAGGAAGAG
TTGTTATTTTACCGAAATAAGACCAATACAGGATCCACAGATAATTCAGA
GAAAGTCAACAGCGTTAAATTGACTAAAACAACTCCACCCGAAATTCACC
AGGAAAATGTGCCAATATTAAAGGAAGTCAATGCTACAATATCGAAAAAT
GCTACTTTAAACAACAAAGATAACACCTCGAATTTTACTTCAAACTATAG
AAATTCAACGATGAATCTAAGCAAAAATGCAACAGTATCGAATCCTCAGA
ACCATACTTTATCTCAACCAGCAAATACTACATTAAACTTAAACAAGACA
ATCTCAGCTATATCGTCCGCTAAGTTTCTCCAGAACGAAACCACTGTATT
TGATGTCGATTACAAACGCAAACGAAATGAAATTCTCGCTCAATACATCC
CTTTGCATAACGTATCCAGAGCTGACCGCAATTCTTCGTTTCAAGCAGGC
TCTAGGAAACATCTCAAGCACCAAATGTTTCCAGAGTGTTATCGGTGTAC
AAAAAACTCTACTTATCCAGAATGCGTACGGCAATCAAAAATCTTGAAAT
GTAATCAAGGCTTGAATAATATTTGTTTCGCAAGATCACATAAGAAGAAA
GACAATAATTTTATCACTTATGAAATGGGATGCACCAATCATAGGCAGTG
CTTGAAAGCACGTGCATTTCCTTGTAGAGATGCATACAAAATGGACATTT
CTGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12899MSTRG.12899Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12899.1.p1MSTRG.12899.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12899.1.p1.exon4MSTRG.12899.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12899.1.p1.exon3MSTRG.12899.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12899.1.p1.exon2MSTRG.12899.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12899.1.p1.exon1MSTRG.12899.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100_pilongenomesc0000100_pilon:19385..23075 -