MSTRG.1289.1.p4 (mRNA) -

Overview
NameMSTRG.1289.1.p4
Unique NameMSTRG.1289.1.p4
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1338367..1344397+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1289.1.p4 ID=MSTRG.1289.1.p4|Name=MSTRG.1289.1.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6031bp|location=Sequence derived from alignment at sc0000006_pilon:1338367..1344397+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTTTCGAATGCGGGCATTCGAATTTGCATTCGAATTTGCTCACATGTGa
gcaaatcaaaatttgaaaactttctttCGAAAATTGGTTTTGTTGGAGGA
GACACATCATTCTGAAGCATACAGAAATACATCTGTTCATCATGTCTCAA
AGGTTGAAACAGAAAGCTCCAGTTTATTATAAAGGCCTTAATAATTCCAG
CACAGCTACAGAGCTGGAAATTTTGGACACTGGAAGGAAGAGAAACAACA
AGAATGTTTATAGAGCTGAAGAAGTGCTCGCCGaaaaaaaGGTTTGTTGT
TATCTtgtaaattttgtttgtaaactgtgagatttattttttatattctt
tttactttttttcatttttgaatctttttttttgttcgcgatTGAAAACC
AAGTGGAGGAGAATATAACTTTTCAACAGAGAAGAAGTGTTGATTAGAAT
TTTCTAGAAAATTTTTTGTCGTTGTTTTAGATTGGAAAAAGAACTTACTA
TCTTGTGAAGTGGTACGGCTGGGGAAGTGACGATTGCACATGGGAACCCA
CTCAAAATTTATTGGACGTCAGACTTTTACAGTAAgctgataattttttt
catgacttttctcttttatttattGAATGTATTAAATGGATTGTTTGATC
TGTTGAAGCTAAGTGGGAAATCTTTTGTGCTTATATCACACtttcgatat
tttttcaactttttccaaatttaattttcacagcttttGGGAACATCCAG
CACCTGACATGAGGCAAGTTGATTATTATGTTGAGCGTCTACTCTCTTGC
TTTGAGACCGCCCTAAAAGAGCGACTGCGAAGTGTGAAAGTTCTGGACTT
TCCAGTAGCTATTTTTCGGTATCTTTTCCATGGGAGGGGGGTGGATAAGA
AAAGAGGGAATAAATCTCTCAATGAGGAAGATTTTGATCCTCACTGGTTC
CCCAACAATTGGCATTCTGGGCTCATAAACAAGAGAGGGACGAAAAGGAT
TATTTTATTTCCTGTGGTTGTGCgtagttttttatcaaaatccccGAAGC
TCTACCAGAAGTATAAATCTGGTGAGGTTAGGGAGAAAAAACAACGCATA
ATTCAGAGGCTTTCAGTCACTATTTTTAAAGACACTTTTAATTCTTATTA
ATTATTCATAACTAATCTTATTTTATGGAAATATATATGGAAAATAACCT
TGCAAGTTTGGCTGGTTATTATGGTTGTAGTTGCCCTCTAAGATAGGCAA
GGGAGGAGATAGACAAGCTATAATTCAAGAACTTGATAAATTAGATTGTA
AGATATCACGTTGAAACAttttcacgtttttctttttcttttcatgtcTG
GTATATCTGAGGAACATTGCATTTCAAAAGTCAAACAGCTAACTTCAAAA
CTCACTGTCAAATGGTaagtaaaatataaaagattcttataaaatatata
aacataaacattatgaaaaaGTTGGTCTGCCAGTTGAAAGTTATTCTTCG
GACCTCACATATCGTCTCTTTTGCCTCGAATAACCATCTTCTTCAAGttt
ttgtgctcttttttCAACTCTCAAGAGATTAATGCAAGCCTCTTTTCGAT
TGATCTTGCTGTGAAAGATTTTCCGCAGTTGGTCATTCTTCTTTTCCACA
CCTTTGAATAAAGATAAACAATTTCTGTCAGGATAAATTTGTAGATATAC
TAAACCTACTTTGACATACTAAACCTTTTAACATTCTTggttaattaaaa
ttttagctTTATTCTATAAAGGATTTACAACAAGCTCTTTTTAATGCTTA
TATTgaattaaaattattaaaaatttagaTGAACAAATTGAGTAGTTATC
ACATACCTTGTCCACTAAATAATCTTAAGGTTCCAAATTCTCTCAAAATT
TCTGGCACGTGCTTGCACATGATATGGATATACGGTGTTACTGGATTATT
CCAACTGTACCCACAACCATTCATTTTCTGTAACTTATGAATCCATTCTT
TGGCCTATAAAGAAGTATAAATTTAGTGTTCAAAAGAGATTCTGTTATTT
CATGATATCTCTTTTCCTGGGACACTATGAAATCCACTTAAAAGTGTTTC
AATCAGACATCAATGATAAATTTGATCAATCTTCTATTGTAGATTATCAT
CACCTTGTTCTCGGAAACATCAATTTCTTCTGCACTGAGTGATGGTCGGT
TCATCGTGTTGTACAAATGTTCAAAGTCCTAACAGATGAAGGTAACTACT
ATTTTTGAGACTGTTCTTTGGATTTGAATAAAGTAAAGTAGACTCCTGAA
TTATATTCAAAGCATTAAGAATGCCTCCACTTAAGCATTTAACAGGCAAC
TTACATTCCACAATTCTTTTGTTGGTTCAACCTGCGCTGGTGgtaaaaat
tcatgaaaatggCTTGGTAGCTTCCGGagcattttctttttatcatttcc
cATCAGGGAGGTCCATTCATAGTTCTTGTCCTTTTTGTCTTTCCAGAACT
TTAAGGTTATCCCACATCCCTTCATTGCACTGATCAAGGCTGTCTGCCCT
TTGTTGTCTCCATTTTTCTGAAAAGGAATTTGTATCTATTAAGAGGGCTT
ATTCAAAAGTAATAGATATTTGAGCTATGAATTAAGATGGGTCTTTTCTA
ACTCTAAAAGTAGATCAAAGAAAGAAGTCCAAGAAAAGTAATTAATTTTT
ACAAACCTACCTGATCCTGATCTATGATAGTATGGAAGAGACCATCTTCA
AGTCGGTCTGTAACTCTTAGTAGTAGATGTAACTCATCTACCATGTATTT
ACACAATGGCACATTTTCAAATATACGTTTGGATTTGACTCCAGGCTGGG
ATGTCCAATTCTTTGTCGTTCTTGGTTTTCCAGTCTTTTCAGGATCTTGT
CTAGAAGTAAAATTTGATAAcctttgactttgattttcaaaataaaacaa
tgTttaaaactcagataTGTGGATAAATTTCTATCTATTTTCTTATAGGG
GTATTGGTTACCTGTCTTCTGTTGATATGTCACAGTATATACACGAATGT
TTCGATGTGGCAGCCTTCATACCAAGGAGTGTTAACAAGAACTGAAaggt
aaatttagttttttaagtaaaacaagccttgcttgaaaaaagaaagaagg
tTTTTCGATTTATTTCAGTATGCTTGGGGAGTCttttctatttgaaaaaa
atcctcTTACCTTGTAATCTCCACCAATCATCAAATCAATTGGGATGTCT
CTCCCATGAGTACGAATTGTTTGGTTTTCACTTATAGTGTGTACATCATT
TATGATATCAGCAAAGCTTGTTGAAATATCGTCGTAAGATTCGTCAACCA
TGGCTACCGCGATAGCGTTATTGGCTGTAATGTTAAAAAGAGTGTTTATA
AAAGGATATCCTATAATTTTTTTAAGTTTTGGTCAACCACACCACACCGC
TCATTTTAAGTCTTGTCTTTAGCatgatttttcctttttataccTGACGA
CTTGAAATGGTTTTCTTTGTCTTCTTCCAGGATTGTATAGGACATCACCA
CGAGATTCGATTTCCTTGTCAGCTTTGTACCATCGCCACTGATCTTCAAC
TGAGATATAAGGTAAATATAAAAGTTTGTCGTTTCATATTAGCGCCAATG
CTCCCTCTAATTTTTTGAACTTATAATTGTGTATCTTTATTTACTTGgtt
tttgaatttcagtttAGGCCAATTACCTTAGCGATCCCTTGGGTGATATC
CTTCAACCGAATGTCATTTTCTAGTTCTCCTAGTAGGGAACATTGAGCTC
CAATAGCCTTTCCAGGCGTGTTGTTGATATCAAACAGCAACGCCAATTCT
TTTTGAGTCTTCTCAATGTTGTGCGTTCGTGGCAAATGTTCGCCCAGTTG
AGTAAGCTCGTGGTATGCTTTTAAGGATACGTTGTATCTATCGAGGACAT
ACAAAACTGCTTTTTCTCTTTCAGGTGTAGATAACGTTGTTCCTGAAGTA
AATGAAGAAGAATGGACGAGTCATACGAAACACCTCGGAAGAGTTTAAAG
ATTACTATCCAAATTACAAAGAATGGACGAGTCATACGAAACACATCGGA
AGAGTTTAAAGATTACTATCCAAATTACAGTTCAAATAAAAGTTACCATT
TCTCCAAACCAGTGGATTGATTTCTAAATTTGTTGGTTCGTCGTCTTCTT
GACTCGCTGTTGGTTCGTTGTCTTCTTGGCTGGATGTTTGCTCGCCGCCT
TGACTGGTTGTTGGCTCGTCGCCTTGACTGGAAGTTGGCTCGTCGCCTTG
ACTGGAATTCTGCGATCCTGAATAcaattatgaaataaaatatattagCA
TTGTCTCTCCATTCTGTTATTATATACTCCCTTACACCCGACCCAGATTA
TCCCTTTGTTCTCCTTATCCCTACAGCAAACTTACCAGAAAATTTAAGGG
AAATCTTTGTCCGCGATGGTGTCAATAGTTTTATCTCTTGTGGTACAAGA
CCAGATTTTTCCGCCGTTTCAGTCATAGCTGACCTAAAAGCAAATAAAGT
TAAACGTTCAGTCCTTGgtcttacggtgcattttcctTATCAAAATTGGT
AATAAATGTTGCTCTAAAAGAAGAATTCCTACTTTATTTGAGATATTCTC
CTTTGTTGTTGACGTTTTCCGAGGTCGGCGAAATGTTTGAGTTTCTTCGT
GTCTCGTGGCTGatattagaaatagaaatttttagttCGATGCGTAGAGt
ggacaaaaatcttttttttcaaagtcatGGTGGGTGGGGCTTAAGATTGT
CGACAGATCTATTTAATCTAAGGTAtttgataaacggggggggacctaat
aaAAATCCCCAACCTTTCACATGACCCAATAAGGTTCACTCAACGGTATA
CGAATCGGATTTACCTCGGGCGTTGAAGGTGGTTCCATTCTTCCAGCATT
GGTTGGTGTAAAAAAGTGCCACTTCTCTTTTACCATCCTTCTTTTGACAG
AACTTTTCCCCTTTATTTGTAACCGCAGCTTTTTGCCGAGCGAGTAAATA
CATCTATAAATTCGTTCATCAATCTCGACACTAAATCCAATTTTTCTAAG
AAGCCCTTCAAAGTACCCCTTTGCCTCTACATACGTCAACGTCGTTGCAT
ATACCGCCAAATCACCTCTAACCTCTACAGTGGGTTTTCTTTGGTCAACC
TTTGAACCGTTCGTATAATTAATCGAATTATTGAAAGCCATATTtcttta
ttgaattttatttgtAAAGAAGAAAAACGTTAAACGCACTCAACAAATTT
ATATACTTCGCTTGGCGtcacttttctttttcgaaggttttgtttattta
atttctAAGACGATCCGACGTCAATTGAAATAGCCTCATGTTCAGGCCGA
AAATGCCATTGGTTCTCCCGTAATAACCATATGATCATTATACAGAACGA
GAAAGCTCTGGCTTTCCACTGTAATATTCCGTCGGTATTTGTTCGGTTTT
ATACACGCAATAATGAGGGTTTTCCTCTGATCAAAACATACATTCGAATG
TTAGGCGGAAAACCCAAAGCCGTACTAccgattttaaaagccaaaatGCC
ACATGACTTTCTGTTGGAACCATATcattattatacatttttggaaagag
GAGAGGATGAAGAATTAGATTATGCttgtattttaaaagtttttatatcT
CCGAATGTTTTCTGCCTTGTCAAAGATAGCTACtttttttAGAAATGACC
GAAATGAGTCTTGTAAAAAAGAGTAAATAAAATAGTCTAGGATTCGAAAT
TTTTGGTCAGAAAAAAGACATAAGTAAACTGAAACATCTTTTCGTTCGAT
ACAGTTGTTTATTTCgtaaaaaatagcaaaacatatattataataaagca
aagaaaaacatatacaaaactgaaatgttctctttttcttttttgacgtt
acTTTTCGAACGCAAACCCCCGGATTTCTATAAATATACAATTCGAACGT
CACTGTTGCAGTGCAACATTCGACGCGATGA

Coding sequence (CDS) from alignment at sc0000006_pilon:1338367..1344397+

>MSTRG.1289.1.p4 ID=MSTRG.1289.1.p4|Name=MSTRG.1289.1.p4|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000006_pilon:1338367..1344397+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATCATTATACAGAACGAGAAAGCTCTGGCTTTCCACTGTAATATTCC
GTCGGTATTTGTTCGGTTTTATACACGCAATAATGAGGGTTTTCCTCTGA
TCAAAACATACATTCGAATGTTAGGCGGAAAACCCAAAGCCGTACTAccg
attttaaaagccaaaatGCCACATGACTTTCTGTTGGAACCATATcatta
ttatacatttttggaaagagGAGAGGATGAAGAATTAGATTATGCttgta
ttttaaaagtttttatatcTCCGAATGTTTTCTGCCTTGTCAAAGATAGC
TACtttttttAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1289MSTRG.1289Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1289.1.p4MSTRG.1289.1.p4-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1289.1.p4.exon1MSTRG.1289.1.p4.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1289.1.p4.exon2MSTRG.1289.1.p4.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1289.1.p4.exon3MSTRG.1289.1.p4.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1289.1.p4.exon4MSTRG.1289.1.p4.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1289.1.p4.exon5MSTRG.1289.1.p4.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1289.1.p4.exon6MSTRG.1289.1.p4.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1289.1.p4.exon7MSTRG.1289.1.p4.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1338367..1344397 +