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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000099_pilon:955721..958899+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12871.1.p1 ID=MSTRG.12871.1.p1|Name=MSTRG.12871.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3179bp|location=Sequence derived from alignment at sc0000099_pilon:955721..958899+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTTGTACTTTCTCATCAGTTagttagaaattttgaaaaatcaaaatggt
agacatACAACAATGCATTGTACTCCTCCTTTTGGTCGGAACATGTTCTT
GCACTTCAACGTTGAGTATTATGATCGAGCGTGGCCAAGATGAATGCTTT
TATATTTCCAAAGCCTCTGGTGAAACCATCACTGCATCTTTCCAGGTAAG
GCATGGGTCTGGAAACAAGAAAAGTTTAGCTTATTCAACCATTTAATTTA
CGACCTAGAATCAAGTCTCACATCTTTATACATAAATAAGAAAGGGGTAA
AAACCCTCCAAGAAGGGTAAAGCCCTTAAATTACAACACCTTTGTTGCCT
TCTCAGCCCAGGCTAGAAAAACGGAACCTCGTAAGAATCGACCAGTGACA
CCTTTCATTATGCCTTATCTCCATAAGGCAGATTCGTTGTCACAAACATG
TTTCAATATTCAGCTAACGTATTATATAACATCCAATGATACAAAATGCT
AGCTTTTAAATCATTTTGCTCCATTCCCTTATATTTAGGTTATGCACGGT
GATTCAGTGGACTTTACACTACTCGATCCGAAGCGTGAAATCATCTACGA
AAATCGTGATTCTGATGGCTACGAGCTTGAACAACAAATTCACATTGGAG
GTAGGATACTCACAACCTAGCTAATACCCGTTTTTGAATAACGGATACTT
TCTTGTTGTGCCTCTcgagaaaatatctttcataTGAGGACAAGCGTAGG
GCATCAGTCGAGACATGATCATAAACTATTTTTAatctatttaatttttc
aaaaatcccgCCCTCCTCATTTCATAATAAATTAATACCTTGAAATTTCC
TTACTTTTCTTTCATCCCTTTCATAGTCTGAGAAAATGACGAAGCTTTCT
TGAAACACTCTCACTAGCCCAGTTAAAAATGAGTTGCAATTTTACAATTT
CCAAGATTTTTTACTGCCTTGCACTAAAAGTTCAGCccaaaaaaatgtaa
agtaccTCAGCAATAATCAAACTCCGAATAATTTTGGGTCACACTAGTTG
CTAATTTGTCGCAAAGCCTAATTGAGCAACATTACAGTACTAACAActtc
atatttctttttcaggtgACTATGGTTTCTGTTTCGCCAATAGCGCGCGT
TACCCAACAGGCGTCCACTTCGAGTATGACTTCCATTTGGGTTCCCCTGA
AGAAGCACAGTTCAAAAAGAAACTTGAtgaagaaaaacgaagattCTTAA
TGAACAAAATTAAAGGTAACTTTGTCGTCGGTTTTAAGTTCTTTTATATA
AGGACGCGAAGCTAAAGTTAGGCGAAAACCAAGGAATAAGTTAGAGCATC
TAGTCGTCAGCCAAGATATAATGACTCTTAAAGCAAGTATTGTAATGCGA
TTCTAATATTTAGGTACTCGGTGTATATGGAATAGGTTTTGCCATTTTGA
GAGGATAATATAACATTGCAATCCCTCACACCCTCTtcaattttaagcct
aaaaatgtttttaaaactaaaagtttCCATGTTTAcgaatttgtgagtat
ttttgtgcgatttcttaagaaatttaatattttgaagTCTGCGAAATCTT
AACATTTGACAATTGAAGCCTAATTTCCTTATATCGtctgttcctataaa
aaacgtgtttggTTGAAACTTATGAATTTTGTTTGATTGAATAGAGAACC
AACCGAAGGTGATTGGAGGACATGGAGCAGAAGGTGTTAAACCTGTCGAA
ATGCACCATGGTGGCCACAAACTACAACCTGATGAATTAGAAATGGACGC
TTTAGCTGTAAGTGAAATCAATGGCCTGTTTGCTCCCCTTCGAAAGTCCT
TGCTGAGAAGAATGCCCAGAGATTTCAATTCATtgaaaaactttacttta
aTTCGGTCCATAACTTAGGAATGATATTGAAATCTTAAGAATGCCCATTG
TAGTAAGCAATAGATTTTGAAATCAACAACCATTGAAAACATGTGATTCT
CCGTACTCATTCCTGGCATTAGAACTGGTTAAATAATTCTCACCGGGTCA
AAAAGTCGGTTGACGTTAATGTAATGGCTATTGAATTCAAGCACACCCCT
GTCCCATTCGCATTGACTCAGTGAGAATTCTTTAACCAATGGAGATGTGG
AGAATGATTGTCTAAGGAACCAATGGGGACGGAAAAATCTCCTGACGGTG
ACTAttatttttgaccaaattttcagGTTGGTAAAGGGTTCCACTGAGTC
TGTCACGGGAATGTGTAAGCCCTGTTTATGCTTTTGAGAGCGTCTAATGG
ATAATGGTTATTATTCTTAtatctaaacttttttcttttattttcagcaC
GCCATGCTTCTAATCTCCTTCAATGCCGACCGTATGGAACATTTCATGAA
CCAACACAAATCCAAACAAGCTTTCTCACATAATGTTCAAATGAAGAATG
CTGAATGGATCAATTATTATTCGGTGACGGTCATCACTTTAGTGATTATC
ATGTCTTTAGTTCAAGTCATTGTcgtcaaaagttttttcagtgGAAAAAT
CAACTTCAAAGTTTGGGAATTCTAAACGGACAATTATTAAGTagtttttg
ataataattttattcattttatgaattaaagtcatttttaatgtatctat
tttttaaagtcaaaccaataagtctgcgaccgcagtcggaggtgacgcga
aggctcctctttcgatagctatctacccaaagaTAGAGAATAagggcacc
actctttctcctGGATCCTTCTCTAAATCTTCCTTACCAGCCTTTCATGT
GTTAAAATTAGAGTACATAATTTTCAGACTATTTgcttcacaaaaaattg
acaaaagagTGCTGACACAAAGAATTTGTTCTAAATATGGCTTCTTTTGC
CTCAGGTTTCTAAGAGAACACCAATCCCAAGGGCTTTCAAAGCTGAAAAC
AttcatttttctcttatttttatttttctccaaTAATTTTGTTATAAACC
TAAATTTGCTTCATTCAGTATAACCAGTTTTATTTATTaggtatttttat
aatttttgatgaatgaTTAATGCCATGCAAAGTAATGttcgataaaaatc
aagaaaacaaaaatttgttcaatttattgTAAAAGCTTTTCGACTATCGT
CATCGTCAGTacagtaaaaaatacataag Coding sequence (CDS) from alignment at sc0000099_pilon:955721..958899+ >MSTRG.12871.1.p1 ID=MSTRG.12871.1.p1|Name=MSTRG.12871.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3765bp|location=Sequence derived from alignment at sc0000099_pilon:955721..958899+ (Clytia hemisphaerica_ch_hm2_pilon)
atggtagacatACAACAATGCATTGTACTCCTCCTTTTGGTCGGAACATG
TTCTTGCACTTCAACGTTGAGTATTATGATCGAGCGTGGCCAAGATGAAT
GCTTTTATATTTCCAAAGCCTCTGGTGAAACCATCACTGCATCTTTCCAG
GTTATGCACGGTGATTCAGTGGACTTTACACTACTCGATCCGAAGCGTGA
AATCATCTACGAAAATCGTGATTCTGATGGCTACGAGCTTGAACAACAAA
TTCACATTGGAGgtgACTATGGTTTCTGTTTCGCCAATAGCGCGCGTTAC
CCAACAGGCGTCCACTTCGAGTATGACTTCCATTTGGGTTCCCCTGAAGA
AGCACAGTTCAAAAAGAAACTTGAtgaagaaaaacgaagattCTTAATGA
ACAAAATTAAAGAGAACCAACCGAAGGTGATTGGAGGACATGGAGCAGAA
GGTGTTAAACCTGTCGAAATGCACCATGGTGGCCACAAACTACAACCTGA
TGAATTAGAAATGGACGCTTTAGCTcaCGCCATGCTTCTAATCTCCTTCA
ATGCCGACCGTATGGAACATTTCATGAACCAACACAAATCCAAACAAGCT
TTCTCACATAATGTTCAAATGAAGAATGCTGAATGGATCAATTATTATTC
GGTGACGGTCATCACTTTAGTGATTATCATGTCTTTAGTTCAAGTCATTG
TcgtcaaaagttttttcagtgGAAAAATCAACTTCAAAGTTTGGGAATTC
TAAatggtagacatACAACAATGCATTGTACTCCTCCTTTTGGTCGGAAC
ATGTTCTTGCACTTCAACGTTGAGTATTATGATCGAGCGTGGCCAAGATG
AATGCTTTTATATTTCCAAAGCCTCTGGTGAAACCATCACTGCATCTTTC
CAGGTTATGCACGGTGATTCAGTGGACTTTACACTACTCGATCCGAAGCG
TGAAATCATCTACGAAAATCGTGATTCTGATGGCTACGAGCTTGAACAAC
AAATTCACATTGGAGgtgACTATGGTTTCTGTTTCGCCAATAGCGCGCGT
TACCCAACAGGCGTCCACTTCGAGTATGACTTCCATTTGGGTTCCCCTGA
AGAAGCACAGTTCAAAAAGAAACTTGAtgaagaaaaacgaagattCTTAA
TGAACAAAATTAAAGAGAACCAACCGAAGGTGATTGGAGGACATGGAGCA
GAAGGTGTTAAACCTGTCGAAATGCACCATGGTGGCCACAAACTACAACC
TGATGAATTAGAAATGGACGCTTTAGCTcaCGCCATGCTTCTAATCTCCT
TCAATGCCGACCGTATGGAACATTTCATGAACCAACACAAATCCAAACAA
GCTTTCTCACATAATGTTCAAATGAAGAATGCTGAATGGATCAATTATTA
TTCGGTGACGGTCATCACTTTAGTGATTATCATGTCTTTAGTTCAAGTCA
TTGTcgtcaaaagttttttcagtgGAAAAATCAACTTCAAAGTTTGGGAA
TTCTAAatggtagacatACAACAATGCATTGTACTCCTCCTTTTGGTCGG
AACATGTTCTTGCACTTCAACGTTGAGTATTATGATCGAGCGTGGCCAAG
ATGAATGCTTTTATATTTCCAAAGCCTCTGGTGAAACCATCACTGCATCT
TTCCAGGTTATGCACGGTGATTCAGTGGACTTTACACTACTCGATCCGAA
GCGTGAAATCATCTACGAAAATCGTGATTCTGATGGCTACGAGCTTGAAC
AACAAATTCACATTGGAGgtgACTATGGTTTCTGTTTCGCCAATAGCGCG
CGTTACCCAACAGGCGTCCACTTCGAGTATGACTTCCATTTGGGTTCCCC
TGAAGAAGCACAGTTCAAAAAGAAACTTGAtgaagaaaaacgaagattCT
TAATGAACAAAATTAAAGAGAACCAACCGAAGGTGATTGGAGGACATGGA
GCAGAAGGTGTTAAACCTGTCGAAATGCACCATGGTGGCCACAAACTACA
ACCTGATGAATTAGAAATGGACGCTTTAGCTcaCGCCATGCTTCTAATCT
CCTTCAATGCCGACCGTATGGAACATTTCATGAACCAACACAAATCCAAA
CAAGCTTTCTCACATAATGTTCAAATGAAGAATGCTGAATGGATCAATTA
TTATTCGGTGACGGTCATCACTTTAGTGATTATCATGTCTTTAGTTCAAG
TCATTGTcgtcaaaagttttttcagtgGAAAAATCAACTTCAAAGTTTGG
GAATTCTAAatggtagacatACAACAATGCATTGTACTCCTCCTTTTGGT
CGGAACATGTTCTTGCACTTCAACGTTGAGTATTATGATCGAGCGTGGCC
AAGATGAATGCTTTTATATTTCCAAAGCCTCTGGTGAAACCATCACTGCA
TCTTTCCAGGTTATGCACGGTGATTCAGTGGACTTTACACTACTCGATCC
GAAGCGTGAAATCATCTACGAAAATCGTGATTCTGATGGCTACGAGCTTG
AACAACAAATTCACATTGGAGgtgACTATGGTTTCTGTTTCGCCAATAGC
GCGCGTTACCCAACAGGCGTCCACTTCGAGTATGACTTCCATTTGGGTTC
CCCTGAAGAAGCACAGTTCAAAAAGAAACTTGAtgaagaaaaacgaagat
tCTTAATGAACAAAATTAAAGAGAACCAACCGAAGGTGATTGGAGGACAT
GGAGCAGAAGGTGTTAAACCTGTCGAAATGCACCATGGTGGCCACAAACT
ACAACCTGATGAATTAGAAATGGACGCTTTAGCTcaCGCCATGCTTCTAA
TCTCCTTCAATGCCGACCGTATGGAACATTTCATGAACCAACACAAATCC
AAACAAGCTTTCTCACATAATGTTCAAATGAAGAATGCTGAATGGATCAA
TTATTATTCGGTGACGGTCATCACTTTAGTGATTATCATGTCTTTAGTTC
AAGTCATTGTcgtcaaaagttttttcagtgGAAAAATCAACTTCAAAGTT
TGGGAATTCTAAatggtagacatACAACAATGCATTGTACTCCTCCTTTT
GGTCGGAACATGTTCTTGCACTTCAACGTTGAGTATTATGATCGAGCGTG
GCCAAGATGAATGCTTTTATATTTCCAAAGCCTCTGGTGAAACCATCACT
GCATCTTTCCAGGTTATGCACGGTGATTCAGTGGACTTTACACTACTCGA
TCCGAAGCGTGAAATCATCTACGAAAATCGTGATTCTGATGGCTACGAGC
TTGAACAACAAATTCACATTGGAGgtgACTATGGTTTCTGTTTCGCCAAT
AGCGCGCGTTACCCAACAGGCGTCCACTTCGAGTATGACTTCCATTTGGG
TTCCCCTGAAGAAGCACAGTTCAAAAAGAAACTTGAtgaagaaaaacgaa
gattCTTAATGAACAAAATTAAAGAGAACCAACCGAAGGTGATTGGAGGA
CATGGAGCAGAAGGTGTTAAACCTGTCGAAATGCACCATGGTGGCCACAA
ACTACAACCTGATGAATTAGAAATGGACGCTTTAGCTcaCGCCATGCTTC
TAATCTCCTTCAATGCCGACCGTATGGAACATTTCATGAACCAACACAAA
TCCAAACAAGCTTTCTCACATAATGTTCAAATGAAGAATGCTGAATGGAT
CAATTATTATTCGGTGACGGTCATCACTTTAGTGATTATCATGTCTTTAG
TTCAAGTCATTGTcgtcaaaagttttttcagtgGAAAAATCAACTTCAAA
GTTTGGGAATTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099_pilon | genome | sc0000099_pilon:955721..958899 + |
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