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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000099_pilon:947499..954376+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12870.2.p1 ID=MSTRG.12870.2.p1|Name=MSTRG.12870.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6878bp|location=Sequence derived from alignment at sc0000099_pilon:947499..954376+ (Clytia hemisphaerica_ch_hm2_pilon)
gttttttgtctttttattccTCATTTGGATAAGCTATTTGTTAAGGTTGC
CAAACAATCAGTTTATCAAATCTTTAGGctgataaacaaaaattaccagA
AGAAAAGTAAACGAAATACTTATATACTGAAAGTATTTTAAGTATCAATC
GACTTTAACgtatttattttgatattataaACGTTACGGGAATTCTTTGA
TTCAGTGACACAGTCAGATGCGGCCACCATTTAATTGGGATAGTTTAGGT
CAAACTACAACCCACTCCACTTTTTCACTATTCTGATAGCAGTCATCACG
ATAGGTATCACATCCTTCAGTAAAACCAGAAAATGGTCCAAGTGGATTTG
CGTACGAGATTGAGTCTAGTCAAAAATCCTCTCACAGTTGTCCCTAGATA
TACAGCATTTTTCCATCAGCTCATTTTTAAACTTGCAATTCCAGTAGGGG
AAACCATGCTCTGTTTGTTTATACGTTTAAAATAAAAAGCTAGAAATGAC
GTATGTAGGGTAGGAATCTTTTGGAAAGGATCAATCTTCACTCGTACATA
TGGGTTCATACGGCTTTAACCACAAACAAATAAAGAATTTTAGCGCTAAT
AAGAATTTGAGACGCGGAGGAAGTTATTGTTAACGTTAACGAATGCCATC
AAAATTGGTGCTTCCCTACAGCGGTTTTTTGTAATTGTCGGTAAATAAGA
CGTGAAAATGCAGATGAAAAAACGCGTGGTTAAATGGTTTCAAAAAGCAA
ATAATGTACCCCATCTCATCATCACATTAAATCACAAATGCTTGTAGACT
GGCCACATATAAAAAATCATAAGTGATTCCACTATACATAATAGCGAGTG
GTGGATAATCAAATGGTTGAAATCTAAGATACTGTAGGGTTTTTCAACAA
AATGGTCGATGGCAGAATTGGTGATCGTTGGCTccaatcattttttcatt
tttgctgaaaaagaaCAAGCCTGAGATGAACAAGTCGTCGCGCGGCATCA
ACTATGACTTAGGTaagtttttccattttctaATTTCACCCAAAAGCATG
TTCTCCAttcttttttatcatatttcattacttacagtaatatatttccc
aggtctatcgacctttatgaaataatcatacttaacattttacaatttat
ggaGATCTTTTTCCCATTCTGTGAGCAATTTTAatgccccccagcggttt
gcatgATTGAATATTCATATAAagtacattcttataaaagagaCCGTGTA
CTAAAcgagaattttctttctgtaaagttcttataaaaattatgAGAATT
GAGACTATTTTCGTTTGACCACGAAAATGCAATTATTCTAATCACAACTT
TTGGCAATAAATCGATTATGAGAACGCGTAACCTTGACTTTTTTCATAAA
GAGGTTGACATAAATTAAGAAATTTAAGACTTTAGAGGGTAGAAAAGTGC
AGAAACAGGACTTGTAGACCCTAGGCCCGAGGCCCAATAAAGGCACCGTT
AGAGTGGGCGCACCGAGCTTACACCCTCTTTTTCCAGGTAACTCCCGCTT
CATCCCTTGTATGTGTTTCTTACAATAAAATTAGTTCCtatgaaaaactt
ttgaatacCACATTTAGAAGTCGTTACCATTTCTCTTTGTGTGCTTTCTC
TTATCAAACATCTACATAAATGCAATtaaataattcgaaaaaaaatattt
atccatAATGGTAGATAAAGTAGTGAGGTTCTCTTAAAATACGCGTGTAC
TAATAAAGGTACAAGCTCCCTTGAGGGAAGTCTTATATTGTGAAAAGGAA
AAGCAGTTCTTTTattatgatttaaaaaatctttgatttgGAGCTTTTGT
TATTTAGGATAGATGTGCTATGCTATTACTAAGAAAacgttaaaatttaa
aattgaaaatattatttgtatttatcatttttttcaaaacatgtgAATTT
TTGAGAAGTGAAGAGCAAAGAGGAAGGATTTCAACGTGAAGAAGAAATTT
GTGTAGTGAATCCGGTATAAGTAATGTTATAGAAACGGGAGATTTGTTCT
GAGGGAGTGTTTTGAATTTGTAAGCTACGATAAAAATGCGTTCGATCGAG
TTAGATACGAAGAGCCTCGAGTTATAGAATGATGACCCGAAATCAAGTGA
GCTGGCACCAACACCAAACCATAGTCAATTGGAGAGTTGTATAGCATCAG
GTTCAAAATTTGTGATGATATATTTTACAGCCATTCCATTTGTATGGTGA
TTCGGAGGATAAGTATAGAGTCAAAGAGATAAAACAGCCCTATCTCGACT
CGAGGCACAGTCCTGTCTCACACCCCAGCGAATCTTTTTTCTCGCAGTGC
GGATGAAAGGAGGTTGATAGCTTCGAAGtttttttATTCCTAgctaaaaa
aatccagtgggaatggCTTAATTCTTCCCGTCAGGAACACAACTTTGTCC
GAATTTTCCGGTGGGGCAGGGATTCTCCCGAGTCTATGACAAAAGGGTAT
CGAGACGCATTGAAAAGTTTTGGTCAGATGTTCCTATGGTTAAGGAGTTT
CACCCGGTCTACGATACAGGGGTATATTATAGTTAGAGTTGATAAGGAAA
TTCATTCAACACAGCAAATGATAACAGAGACTTGATAAGTGACAGATAGA
ATCTTTTTAATGATATAATTCTTTGATATCAGAATTTGCAGCTTGTAACT
ATTAGATTAGATTAGATAATAAGATTCTACCGGATAGTAAGACAGTGATG
TTAGTAAGTTTTAATGAAAATTGTGATGTTTTTGTGCCAATAGACTAATG
TATGATATAATATGTAATGGTTGTAATGTAGGTTTAATATTAGCTTGCTA
AATTAGTAGATGACTGTTATAGATCATTGAAATGATTGCCACGGTTAGAG
CAAATCCAAGTTAGTTATTACCAGGGCCAAATGTAgctaaaagtttttaa
aattcaaagccAGGGAGCAGTGGGCTTACCAAATGACCCCTACAGTGCAG
AAAAAtgtcggtgaaattcatacccttacagtgcatttttctcaaattat
caaacaaataaaaattttcgggcAACAATGCGTAATTTTTCCTAGACTTG
TAATTATTTCTCAGTCAATTTGACTGACTGCCATCTTCTTCCCGAGAATT
CATAGTAAAGAGGGTCGACTTCCATAAACATAAGTGATAATATCGAGTCC
CTTTAGAATCTCCCTGgttaataattttataattttaccaaaattaattc
aaaatgttCATATATTTCTCGTCTAGAGACGTCACTAACCTACGATGTAT
CCAGGAAAATATTTACTGATAAGCTTAGTATTGACCCTGGAGTCTGTCCT
GGTCATGGCGAAAAGTTTGACGATGCAGTTGAATGGATATGATGACGATT
GTGTTTACTTATCTAAAGAGAAAGACGAAAAGCTTGATTATATGGTAAGT
TTACCTAAAggtcagtagcgtggtgggtcaaggcaaactggggaggcaat
tttagaagatttgggttttggcgccccctatgaaaagtaaatatttttta
aagaataacgcgagcgaagcgagcacgaaAATCTTTGggtattttcttct
ttttggctgaaaactgcCATATTTAAGGTGTAAAAGGGACGCCGAAATTA
TAggctagcgaaaaaagtttctgcgattcagactaccgAAATTAGTAATT
TAAAGCGTCCTTTTTGCACCCTTTATAATTCGGCGCCCCTTTGAAAAACC
ACCCTGcaccctgccaccacgctactgccaaaggtttcttattttgatag
aactttggagattttgaaattttccataatAACAGGTGTTTTACAAAAGT
ATGATAGGTAGGATTCTGGACTCTCTTTTCATTGGAAGAATAAAGTGAGA
AATGTTCCCTTTGAAAGAAATACCCGACtgagattttggatgttcttaaa
tgaaaaaacaacttgTATCGACATTTATATTCTTCATCTTGCTTCCTTCT
CACTTGGTCACTAAGGGTGTATAATACAAAAAGGATTGGGctgaaaaatt
ataatttcgGATATTAAGAACGTCAAAAGCCTTTGgacgttttaattttt
taagctTCTAAGgattctattgtttaaacagTTTATAAGTAGCTGACTCC
CTAACAAACTCATTCACAGTTTAAAGTCTTCAAAGCTTTAAAATCTCTta
gaatgttttaaaaattattctagCTTCGGAGTCTTATGTTATAAGAAACT
TTGTTTTGAGAAACCTGTTCTTGAATTTCAGTTGATATCAGGAGGTGCGA
AAGTGGATTTTACCATGTTCGAACCGAACGAAAACAGTCCAAATGTACAA
CGACATGAAGTTACCGAGCATGAACAAATTGGATTGCTGCTTAATAAGAC
AGGTAGATGCTCTTTTTATTACCAGTTTGATCTCAAATTGTTCTCATCTT
GTTCTTATCTTAAAGGCAAAATTGAGATATTAAAAGCGCATTTTCGTTTT
ACTGTCTAAATCTTAACTTGCTTGAAATTCAACCATTCCAGGCTCAAATG
ttttcttaaattattcttatttttcggtataaaattgttcttataaaata
aaaaaggcgaTTAAAAATCTGAAGTGGATGGAAGGTAATGGCAATTATCA
TTTGTCTGAAATTTAAACGGTGAATCTTTGTTTGATGGTTTTTGCAACTA
TAGCACCTCATACCCAAATGTAGCCTGTACCAGACTCTTCGTCGCTGACT
GAAAATATAACCTACggcaagtttttttcaaaatatagaaaACGCCCGTG
GCGGCAGGGTGATAAGGCTAACCCAAATGAAGTTTTCTtagacttttctt
aaatttcaggCGATTACAAATTCTGTTTCGCTAACGCCTACCAGAGTCAC
CCCATCAATGTGCTGTTTGAGTATGATATGTTTGAAGATATAGAAGCCGC
ACCCAATGGAAACATGCAGAAAGAGAAAGACATTTTCGTAAAGAAGGCAA
AAGACGCCGTTAGAGAAATGTTCGACCAGCAAGGTACTGTAAAACCCTTA
TCTAGCAACACTGATCTTTTGTTATGCAAGGGCTATAAAATCAATTCTTA
AATTAAACTCAAACCCACTCTCCTAGTTCGCTTTTAAGATTCTCAAAGCG
TTCACAATTTTGTATTGCccatcagtaaaataaaaaaaagtgatgTATAT
GGCTCTGGGGTCTATTACGAAATAGGCTTTTATGTCAGACGGGCAAATCG
ATGACTTTGGACCCCTGTGAAAATTGACTCTGTTGATTCTAAAACATATA
AAGCAGGGAAAAGTTTCGCCATAAgctatattttaagaaaattgataagT
GCTTAGGGGATATGCAAAGAGCAAGaaaaaaaaTGGTTTCATATACAAAT
TGAAATTTCGTCGAGCAGTGAGACAGGACCGTCTCTAAATAAACTTGAAT
TACTTTGATTGGATATAATTtagcggggattaaatttcacgattttAGTG
TCATCCAAGAAAATAAGTCCACGTGGAATATTTATCAGCCATCACCagtg
ggcttttccagaaatagtccgtgttCCCCCTGTTGAGGAATATCCAGgag
gttaacgatttttgttcaaaagtggatatccaggaggTTAAATATcgaca
agggagcggatatccagggggtaagcatctttataaaagAGGATATCTAG
GgagttgagcatatttttaagagtggatatccagggggttttTACGAATA
AAGCGGGATATCCAAGGGGTGcgatactttgaaaaatcaatatcctcaac
agtggggacaaattttttttctggaaaagcccatctTGTTCGGTTcgcaa
aacttttcatttcattccATTGGCATAGGTTACCATTTGACAGACGATGC
GCACAGACGTTCCTTCATGAAAGCAGTTGTAGAACATCAAAAAGAAGCGC
TCTACCACGGTGAAGGGAAAGGCGCTGACGATCGACTGAAGGTAAATACA
CGATCCTTTCTCGAAGTTTACTGGATATGTTTTACTTTTCCAGTGCgcac
agtttttgaaaaatatgaacactttttgaaaaatatgaacattttcaaaa
tttttgaaatccaataaaatccaataaaactaaaaCTGACATAAAAGCAT
GTAacctgaaagttttttttgtaattgtgCATAGTCATTCATTTTTGTTC
CATTTTCGAAGgcaaaaactaaaattgtacgTATTTTAATTTCTGTCCTT
TCAAGCAAAAAGAGGTCTGTATGTTTACCCCAAAAAactatttattttct
taacaaTCCAACTTAGGGTACAATTACAATGATTGGTATCTACAtggatg
aaatggaaaaatcaTTGAGCAGACATGGAAAACGCATCGGGCGCCATCAC
TTCTTACAGATGATCAACCATGACCGAGTAATGCAATATTCTATCCTAAT
CTCCTTAGCTATGGTTGTCAGTACATGTGTCCAATTGGTTGTGGTCAAAG
GATTCTTTAATGGCAAAATGTCTTTGAATGtcttttcttataaatagcaa
ATTTTATGATATATAGGTTTAAGCGTTTATAGGAGTGGCttctttgatta
aaaaaaagaattttcaaaccaACATTCGTACGCGTATACGAGTGGTAGCC
ACCGTGCATCATTGTTGGTGGACCTGTTTTAGTTTGCGATCTACGTTGAG
GTCTTTATTGGTTTGGAATTGGGCATTTCAAGAGCCTGGACTTGAATTTT
TGTAGCTTTTGTATAATATTTCTTATAGATTATCTTATAGGGGGTTACAA
AGAAAATTTTTAAATTACAATAGTATCATAGAATAAATTTAGGGAAGAAA
GAGAAAAGATTATTAGAATATATGATTG Coding sequence (CDS) from alignment at sc0000099_pilon:947499..954376+ >MSTRG.12870.2.p1 ID=MSTRG.12870.2.p1|Name=MSTRG.12870.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3945bp|location=Sequence derived from alignment at sc0000099_pilon:947499..954376+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATCCAGGAAAATATTTACTGATAAGCTTAGTATTGACCCTGGAGTC
TGTCCTGGTCATGGCGAAAAGTTTGACGATGCAGTTGAATGGATATGATG
ACGATTGTGTTTACTTATCTAAAGAGAAAGACGAAAAGCTTGATTATATG
TTGATATCAGGAGGTGCGAAAGTGGATTTTACCATGTTCGAACCGAACGA
AAACAGTCCAAATGTACAACGACATGAAGTTACCGAGCATGAACAAATTG
GATTGCTGCTTAATAAGACAGgCGATTACAAATTCTGTTTCGCTAACGCC
TACCAGAGTCACCCCATCAATGTGCTGTTTGAGTATGATATGTTTGAAGA
TATAGAAGCCGCACCCAATGGAAACATGCAGAAAGAGAAAGACATTTTCG
TAAAGAAGGCAAAAGACGCCGTTAGAGAAATGTTCGACCAGCAAGGTTAC
CATTTGACAGACGATGCGCACAGACGTTCCTTCATGAAAGCAGTTGTAGA
ACATCAAAAAGAAGCGCTCTACCACGGTGAAGGGAAAGGCGCTGACGATC
GACTGAAGGGTACAATTACAATGATTGGTATCTACAtggatgaaatggaa
aaatcaTTGAGCAGACATGGAAAACGCATCGGGCGCCATCACTTCTTACA
GATGATCAACCATGACCGAGTAATGCAATATTCTATCCTAATCTCCTTAG
CTATGGTTGTCAGTACATGTGTCCAATTGGTTGTGGTCAAAGGATTCTTT
AATGGCAAAATGTCTTTGAATGtcttttcttataaatagATGTATCCAGG
AAAATATTTACTGATAAGCTTAGTATTGACCCTGGAGTCTGTCCTGGTCA
TGGCGAAAAGTTTGACGATGCAGTTGAATGGATATGATGACGATTGTGTT
TACTTATCTAAAGAGAAAGACGAAAAGCTTGATTATATGTTGATATCAGG
AGGTGCGAAAGTGGATTTTACCATGTTCGAACCGAACGAAAACAGTCCAA
ATGTACAACGACATGAAGTTACCGAGCATGAACAAATTGGATTGCTGCTT
AATAAGACAGgCGATTACAAATTCTGTTTCGCTAACGCCTACCAGAGTCA
CCCCATCAATGTGCTGTTTGAGTATGATATGTTTGAAGATATAGAAGCCG
CACCCAATGGAAACATGCAGAAAGAGAAAGACATTTTCGTAAAGAAGGCA
AAAGACGCCGTTAGAGAAATGTTCGACCAGCAAGGTTACCATTTGACAGA
CGATGCGCACAGACGTTCCTTCATGAAAGCAGTTGTAGAACATCAAAAAG
AAGCGCTCTACCACGGTGAAGGGAAAGGCGCTGACGATCGACTGAAGGGT
ACAATTACAATGATTGGTATCTACAtggatgaaatggaaaaatcaTTGAG
CAGACATGGAAAACGCATCGGGCGCCATCACTTCTTACAGATGATCAACC
ATGACCGAGTAATGCAATATTCTATCCTAATCTCCTTAGCTATGGTTGTC
AGTACATGTGTCCAATTGGTTGTGGTCAAAGGATTCTTTAATGGCAAAAT
GTCTTTGAATGtcttttcttataaatagATGTATCCAGGAAAATATTTAC
TGATAAGCTTAGTATTGACCCTGGAGTCTGTCCTGGTCATGGCGAAAAGT
TTGACGATGCAGTTGAATGGATATGATGACGATTGTGTTTACTTATCTAA
AGAGAAAGACGAAAAGCTTGATTATATGTTGATATCAGGAGGTGCGAAAG
TGGATTTTACCATGTTCGAACCGAACGAAAACAGTCCAAATGTACAACGA
CATGAAGTTACCGAGCATGAACAAATTGGATTGCTGCTTAATAAGACAGg
CGATTACAAATTCTGTTTCGCTAACGCCTACCAGAGTCACCCCATCAATG
TGCTGTTTGAGTATGATATGTTTGAAGATATAGAAGCCGCACCCAATGGA
AACATGCAGAAAGAGAAAGACATTTTCGTAAAGAAGGCAAAAGACGCCGT
TAGAGAAATGTTCGACCAGCAAGGTTACCATTTGACAGACGATGCGCACA
GACGTTCCTTCATGAAAGCAGTTGTAGAACATCAAAAAGAAGCGCTCTAC
CACGGTGAAGGGAAAGGCGCTGACGATCGACTGAAGGGTACAATTACAAT
GATTGGTATCTACAtggatgaaatggaaaaatcaTTGAGCAGACATGGAA
AACGCATCGGGCGCCATCACTTCTTACAGATGATCAACCATGACCGAGTA
ATGCAATATTCTATCCTAATCTCCTTAGCTATGGTTGTCAGTACATGTGT
CCAATTGGTTGTGGTCAAAGGATTCTTTAATGGCAAAATGTCTTTGAATG
tcttttcttataaatagATGTATCCAGGAAAATATTTACTGATAAGCTTA
GTATTGACCCTGGAGTCTGTCCTGGTCATGGCGAAAAGTTTGACGATGCA
GTTGAATGGATATGATGACGATTGTGTTTACTTATCTAAAGAGAAAGACG
AAAAGCTTGATTATATGTTGATATCAGGAGGTGCGAAAGTGGATTTTACC
ATGTTCGAACCGAACGAAAACAGTCCAAATGTACAACGACATGAAGTTAC
CGAGCATGAACAAATTGGATTGCTGCTTAATAAGACAGgCGATTACAAAT
TCTGTTTCGCTAACGCCTACCAGAGTCACCCCATCAATGTGCTGTTTGAG
TATGATATGTTTGAAGATATAGAAGCCGCACCCAATGGAAACATGCAGAA
AGAGAAAGACATTTTCGTAAAGAAGGCAAAAGACGCCGTTAGAGAAATGT
TCGACCAGCAAGGTTACCATTTGACAGACGATGCGCACAGACGTTCCTTC
ATGAAAGCAGTTGTAGAACATCAAAAAGAAGCGCTCTACCACGGTGAAGG
GAAAGGCGCTGACGATCGACTGAAGGGTACAATTACAATGATTGGTATCT
ACAtggatgaaatggaaaaatcaTTGAGCAGACATGGAAAACGCATCGGG
CGCCATCACTTCTTACAGATGATCAACCATGACCGAGTAATGCAATATTC
TATCCTAATCTCCTTAGCTATGGTTGTCAGTACATGTGTCCAATTGGTTG
TGGTCAAAGGATTCTTTAATGGCAAAATGTCTTTGAATGtcttttcttat
aaatagATGTATCCAGGAAAATATTTACTGATAAGCTTAGTATTGACCCT
GGAGTCTGTCCTGGTCATGGCGAAAAGTTTGACGATGCAGTTGAATGGAT
ATGATGACGATTGTGTTTACTTATCTAAAGAGAAAGACGAAAAGCTTGAT
TATATGTTGATATCAGGAGGTGCGAAAGTGGATTTTACCATGTTCGAACC
GAACGAAAACAGTCCAAATGTACAACGACATGAAGTTACCGAGCATGAAC
AAATTGGATTGCTGCTTAATAAGACAGgCGATTACAAATTCTGTTTCGCT
AACGCCTACCAGAGTCACCCCATCAATGTGCTGTTTGAGTATGATATGTT
TGAAGATATAGAAGCCGCACCCAATGGAAACATGCAGAAAGAGAAAGACA
TTTTCGTAAAGAAGGCAAAAGACGCCGTTAGAGAAATGTTCGACCAGCAA
GGTTACCATTTGACAGACGATGCGCACAGACGTTCCTTCATGAAAGCAGT
TGTAGAACATCAAAAAGAAGCGCTCTACCACGGTGAAGGGAAAGGCGCTG
ACGATCGACTGAAGGGTACAATTACAATGATTGGTATCTACAtggatgaa
atggaaaaatcaTTGAGCAGACATGGAAAACGCATCGGGCGCCATCACTT
CTTACAGATGATCAACCATGACCGAGTAATGCAATATTCTATCCTAATCT
CCTTAGCTATGGTTGTCAGTACATGTGTCCAATTGGTTGTGGTCAAAGGA
TTCTTTAATGGCAAAATGTCTTTGAATGtcttttcttataaatag
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099_pilon | genome | sc0000099_pilon:947499..954376 + |
|
