MSTRG.12848.2.p1 (mRNA) -

Overview
NameMSTRG.12848.2.p1
Unique NameMSTRG.12848.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000099_pilon:466828..470516+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12848.2.p1 ID=MSTRG.12848.2.p1|Name=MSTRG.12848.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3689bp|location=Sequence derived from alignment at sc0000099_pilon:466828..470516+ (Clytia hemisphaerica_ch_hm2_pilon)
ACTGATAGATCAATAAAGTATTCAGTGAGTGAGACCATTTTGCACACACG
AAGTTGGTTAAATTTGAAGACACTTCATCAAATCGCCAcaatattatcat
ttttaatttcaagatggtCGCTACACATGTTCTCTCATTTTTCCTGATTG
GGCTTACAGCCTTCTGCAGTGCTGATTTGTATACGGTCACAAAGAAAGTT
TATTTCGACATTACCATCGATGGCAAAGATGAAGGAAGAATTGTTATGGG
ATTGTATGGAGAGACAGCTCCAAAAACCGTTAAAAACTTCTATGAACTTT
GCACAGGACAGGTACTTTATGATAATTTggttttttatatatatattttg
gtGCTTGATGAGCTCACCCAGTTACCCCCCAATTCACGTATCAACGCAAt
tcctttttgaaatttatgtgATCCcgatttatcaaaatttgaaaatcggg
aaaactttcaTACAAATTGGGATAATCGGGGAAAATATTACAGTCCACAC
ATTCACGCATCGAAAGTTCGCCTTTTACGCCTCAACctaatttcacgcat
tcacgcaaaaggCCTTTTCACTCAACTACGAAAACCGTTGATATTCTAAA
GTCACTAGGAGCCCGAGTGGGAGTGTGAGTGGTCTAACATTATTCACATT
GTTTCTGATTTTCTACTTGATTTATATCAACTTTCTGATAGATCGGAATT
AGTTGTAGTAAGTTCTTGGCCATGCCCTATAAATGCTGAAAAAGCGTTTT
TAGTTCTTTCAGAACGACGAAGGCCCATACACAAGACGACTCAATTCAAT
TAAGTTTTACATACACTTCTGAAATTTGAAGCGGTTTGAAATCTATTCAG
AgcttttggaaatttcaacaACGCGAGGCTGCAGAATGTGACTCGTCTGA
TGAAAATCTCATTACAACGGGTGAACTGAAATATAACACCCTTGTCTCTG
TGACCCACTGGCCACCCCAGTGAAAAAATCGCACAAAAGCTCAAAACAGG
GCCGTTCTTTTAGCTTTTATTGGGGAAAATTGTCACCCCTGTGAAAAATG
GGAGTTTCTCTTTAACCACAGTggataaatttaaaatttaaaatagccAC
TTCACTGAAAATATGATGAAAATATGAATCGATCGACCCACAGCAGTTTT
GAATTACACCCCCACTGAGCTTTTGGTAACCAGTGACAGGAGTGTAATat
aggtacacgctttttttttataagaatggtgttttttcatttcatcatgg
atattcttaactttttggcgaaaatcatccaaaaatattcttacggtatt
cttaggttaagatcgaaattggcattCTACAGGTTAAACTGCATTAAAAA
TGgcttcttaggttcagttgctaaattccacgatggtgataatcttacca
tattcttaattatttggccattttcatcatggacattcttataaagtgta
ttcttataaaaaaaaacgtgtaattggtTTCTAAGAAACAGCAGTCgatg
atttttatttattttttcttaaaagaaagaATTATGCTAGCTTAAGACTA
ACAAACTATATATCCATGTTTTTAGAATGGTTATGGATACAAGGGCAGCA
AGATTCATCGCGTCATTGCTGATTTCATGATGCAAGGAGGTGACTTTTCA
AGTGGTGATGGAAGTGGTGAGATTTTCAGTCATCTTCCTTTGCGTTTAAG
TGAAATGCTTTTCTTGAGTGTAATTGTACAATCATCAAAAATGGAGAGTA
CATTGGTTTAAAAGTGGTAAGAAGTAAATGACGCCAATAACGAGCATTTT
TAGATTCTCAGGAAATGAACTCCGTCCAAGAAAGTTTGAGAACTTCTAGA
TACCATTATAACGGTTTCTGATGAAATCTGAAATTATAGACTTTAGTACG
GTTctatcaaatttggtcaacatCAATATTGTTTTGCCCAGAATTGGTGC
AAAACTAggcaataatgacgtcatcataagctgTTCCAGGCAAAAAATTA
TGGATCATGAATTCAtgaattattattattgttatttgtattatttttaa
aacttatgAATTTCTGCTCAATTCGTATTTTTGGAGTTagcaatatttta
ttttttagatgcACAAACTTTAAGGCCAATTATCTCATGACTGGAGAGCT
CTAAATACACAAAGTTTGTGTTCATTTGAAAGCTCTTTCCACTTCAGAAT
GTTTTCTGTAAGTATGTCATTTAGAAGTTTTAGAAAAAGGTcctatgaat
gaaaattaacgaCGCTTTTAAAACCGTTCCAAAAGTCATGAAGTATGTCC
GCAGAACacttaaacacccctgtctctgtacCCCAGTGGGTTATCAAAAG
CTTGGTGCGGGTGAATGGTTTAACTCTGAGCCTATGAGGCTAAAGTAGAT
AACTGTTCGGGTGTATTTATCATTACTTTAGAATCTTTCTCATCTCTATT
TCATGAAAATGTGATTAGTTTTCATTAATTAAACTTGAAGCTGAACACGA
AATTACCATTGATTTTCAGGTAGCAAAAGCATTTACGGAGAAAGCTTTAA
AGACGAGAACTTTAGCATCAATCACACAGTATCAGGACTTATTTCCATGG
CCAATGCTGGACCAGACACAAATGGATCACAAATCTTTATCACTTACGTA
AAGTGTCCATGGCTAGATGGACGTCACACTGTTTTTGGAGCCGTTTTGGA
AGGAATGGTAGGTATTTTACTCTTTGTGATTAGCATACCACGGTAAAtct
ataaaaaactttttctgtttGTCCGTCCCATCATCTTTTGCTTTTATTAC
TCTTGCACATTGATTACAGTCATTAACATAAGgaaaagtaataactttca
aGAATTGAGAATTAGAACACAAAGGATTTTGGGATTGAAACTCGGTACAA
GTACAAATAATTATGACGTGTGTAAAATGGAGCGCTATAGCATACCgtcg
cgaatctaaaaataaacattgatttttatgtttgactgaaattcaatccc
atcaccctttgcCTTTATCacgcttgcacgcaaattacattcaattacaa
agaacaagtaataactttcacgacttttgaattaagacgaaaaggattgt
gggattgaatttcggtcaaatgagagaagtaataatcatgacgtttACAT
GACGAAGCGCTACTAGAACTTACTATATATATtataaaattaccaaaaaa
agaCCCACATAACCACACAAATTGATCAAGGTTAGCAAGTAAGCTTTTAA
TCTTCCGAATTataaaaggaaattttcaagTCTTGtttattacgaatttg
aaattttttattgtcattagttttttagcacaattaggattattttcaaa
tgttaataatttttCAGGATATTGCACGTAAAATCGAAAGAATTTCAACT
GGAAAACGCGATCGTCCAACAAAGGATGTTGTAATCAAAGACTCTGGTGC
TTTGGCACTCAATAGACCTTTCGTCCACGTGCCAAAAGAACTATAAAAAC
AAATGGGTCCCTAAATATGACATAGAAtcattttaaattatatttaCTAC
AAATAGGTTATGttagcaattttttaaattgtaattttaaattgtatttt
cctgttgaaaatcaaacataatatttttttcataatgacATCATTgcatt
aaaattttgctgcaatttAATTTTGCAGTCCAAGAAAAC

Coding sequence (CDS) from alignment at sc0000099_pilon:466828..470516+

>MSTRG.12848.2.p1 ID=MSTRG.12848.2.p1|Name=MSTRG.12848.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2424bp|location=Sequence derived from alignment at sc0000099_pilon:466828..470516+ (Clytia hemisphaerica_ch_hm2_pilon)
atggtCGCTACACATGTTCTCTCATTTTTCCTGATTGGGCTTACAGCCTT
CTGCAGTGCTGATTTGTATACGGTCACAAAGAAAGTTTATTTCGACATTA
CCATCGATGGCAAAGATGAAGGAAGAATTGTTATGGGATTGTATGGAGAG
ACAGCTCCAAAAACCGTTAAAAACTTCTATGAACTTTGCACAGGACAGAA
TGGTTATGGATACAAGGGCAGCAAGATTCATCGCGTCATTGCTGATTTCA
TGATGCAAGGAGGTGACTTTTCAAGTGGTGATGGAAGTGGTAGCAAAAGC
ATTTACGGAGAAAGCTTTAAAGACGAGAACTTTAGCATCAATCACACAGT
ATCAGGACTTATTTCCATGGCCAATGCTGGACCAGACACAAATGGATCAC
AAATCTTTATCACTTACGTAAAGTGTCCATGGCTAGATGGACGTCACACT
GTTTTTGGAGCCGTTTTGGAAGGAATGGATATTGCACGTAAAATCGAAAG
AATTTCAACTGGAAAACGCGATCGTCCAACAAAGGATGTTGTAATCAAAG
ACTCTGGTGCTTTGGCACTCAATAGACCTTTCGTCCACGTGCCAAAAGAA
CTATAAatggtCGCTACACATGTTCTCTCATTTTTCCTGATTGGGCTTAC
AGCCTTCTGCAGTGCTGATTTGTATACGGTCACAAAGAAAGTTTATTTCG
ACATTACCATCGATGGCAAAGATGAAGGAAGAATTGTTATGGGATTGTAT
GGAGAGACAGCTCCAAAAACCGTTAAAAACTTCTATGAACTTTGCACAGG
ACAGAATGGTTATGGATACAAGGGCAGCAAGATTCATCGCGTCATTGCTG
ATTTCATGATGCAAGGAGGTGACTTTTCAAGTGGTGATGGAAGTGGTAGC
AAAAGCATTTACGGAGAAAGCTTTAAAGACGAGAACTTTAGCATCAATCA
CACAGTATCAGGACTTATTTCCATGGCCAATGCTGGACCAGACACAAATG
GATCACAAATCTTTATCACTTACGTAAAGTGTCCATGGCTAGATGGACGT
CACACTGTTTTTGGAGCCGTTTTGGAAGGAATGGATATTGCACGTAAAAT
CGAAAGAATTTCAACTGGAAAACGCGATCGTCCAACAAAGGATGTTGTAA
TCAAAGACTCTGGTGCTTTGGCACTCAATAGACCTTTCGTCCACGTGCCA
AAAGAACTATAAatggtCGCTACACATGTTCTCTCATTTTTCCTGATTGG
GCTTACAGCCTTCTGCAGTGCTGATTTGTATACGGTCACAAAGAAAGTTT
ATTTCGACATTACCATCGATGGCAAAGATGAAGGAAGAATTGTTATGGGA
TTGTATGGAGAGACAGCTCCAAAAACCGTTAAAAACTTCTATGAACTTTG
CACAGGACAGAATGGTTATGGATACAAGGGCAGCAAGATTCATCGCGTCA
TTGCTGATTTCATGATGCAAGGAGGTGACTTTTCAAGTGGTGATGGAAGT
GGTAGCAAAAGCATTTACGGAGAAAGCTTTAAAGACGAGAACTTTAGCAT
CAATCACACAGTATCAGGACTTATTTCCATGGCCAATGCTGGACCAGACA
CAAATGGATCACAAATCTTTATCACTTACGTAAAGTGTCCATGGCTAGAT
GGACGTCACACTGTTTTTGGAGCCGTTTTGGAAGGAATGGATATTGCACG
TAAAATCGAAAGAATTTCAACTGGAAAACGCGATCGTCCAACAAAGGATG
TTGTAATCAAAGACTCTGGTGCTTTGGCACTCAATAGACCTTTCGTCCAC
GTGCCAAAAGAACTATAAatggtCGCTACACATGTTCTCTCATTTTTCCT
GATTGGGCTTACAGCCTTCTGCAGTGCTGATTTGTATACGGTCACAAAGA
AAGTTTATTTCGACATTACCATCGATGGCAAAGATGAAGGAAGAATTGTT
ATGGGATTGTATGGAGAGACAGCTCCAAAAACCGTTAAAAACTTCTATGA
ACTTTGCACAGGACAGAATGGTTATGGATACAAGGGCAGCAAGATTCATC
GCGTCATTGCTGATTTCATGATGCAAGGAGGTGACTTTTCAAGTGGTGAT
GGAAGTGGTAGCAAAAGCATTTACGGAGAAAGCTTTAAAGACGAGAACTT
TAGCATCAATCACACAGTATCAGGACTTATTTCCATGGCCAATGCTGGAC
CAGACACAAATGGATCACAAATCTTTATCACTTACGTAAAGTGTCCATGG
CTAGATGGACGTCACACTGTTTTTGGAGCCGTTTTGGAAGGAATGGATAT
TGCACGTAAAATCGAAAGAATTTCAACTGGAAAACGCGATCGTCCAACAA
AGGATGTTGTAATCAAAGACTCTGGTGCTTTGGCACTCAATAGACCTTTC
GTCCACGTGCCAAAAGAACTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12848MSTRG.12848Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12848.2.p1MSTRG.12848.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12848.2.p1.exon1MSTRG.12848.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12848.2.p1.exon2MSTRG.12848.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12848.2.p1.exon3MSTRG.12848.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12848.2.p1.exon4MSTRG.12848.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099_pilongenomesc0000099_pilon:466828..470516 +