MSTRG.12843.3.p1 (mRNA) -

Overview


Name	MSTRG.12843.3.p1
Unique Name	MSTRG.12843.3.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000099_pilon:270785..276650+
coding sequence from alignment at sc0000099_pilon:270785..276650+

mRNA from alignment at sc0000099_pilon:270785..276650+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.12843.3.p1 ID=MSTRG.12843.3.p1|Name=MSTRG.12843.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5866bp|location=Sequence derived from alignment at sc0000099_pilon:270785..276650+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaggttCAACAAAAGGTAATCGAAAtgcttgaaaaacaaaaaacacaag
CCAATTTCGGGAATGCAGGTGCAATCAATAATTTGATACGAGCTGCAATC
GCCAAAGCTGCAACACGTCCATCACGACCTGATGGCAAGATGTTGTTGGA
GGTTTGTTCAACTTATATTTCGTTGACAAATTGTTTGGCTCCTTGTATAT
TTCCTGGAGATCTTCTGGAGATCTTCTTGATGAGGAAAACTATTATCAGA
TGTTTTAATGATTAAGTACTACTCAGGGTATCGGTCGACTATCATTAATG
GATAATTGGGACCCAACTTCTTCCCTGAATCTCATTTTCAAGTGTTCTTA
TCTTTCAGATTTAACTTttctgattttccaaaaattagtGATCAGTAATC
CATTGTAAAAAATCTAATTAGTCAATCGAGAAATATTATTGTACTACAGG
TTTCGGACATAGATTCAGATGCAGACAAGGAGGACGATTCCAACGCTGAT
CCTTTTGCACCACTCAACAAACTGTATCGTATGGAAACTATTAAAGAGGA
GTTGATCCAAATAAAGAACACTTTCCAAGTCGCCAAAGATGAAGGTATAA
ATTACTTTAGGTGGTCTCTTCCACCTCTGTCAAAGATGATTGTAAGGCTT
AAAGTGTAGCATTCTTTTGACCATAATAAGAGGACGGAAACAATCGAgca
tttcaatagaaacaaaaggCTGCTAAGTCTATGTTATGAATAGCGCATTT
CTtctcctcttttcccaaatctctgataATAAGAATGCacagtttttgtt
ttaaaggcaTTATGATTGGGGACTAAttatatttacttttcattcaGGAG
CGAAAGACATGCCAGAGCTTGGTCATTTCGTGTTCCGTGGTTCACCAGGA
ACAGGGAAGACAACCGTCGCTCGAACCATGGCGaagattttatttgattt
gggaTTATTACCAAGAAATCACGTGGAACAAACGTCTGGTCTTGATCTTA
CAGGTAATATTGGGTTTGCACGACTGTTTGAGATTGACCAAAGTAATGAA
GCAgcgctgaaaatgaaaaatttattaacaCAGACGGTTCATTTAAAAAA
GCTTCCTTTCTCAAATTTCCTGTAACTAAACCCCTACAaagacacccctt
ctcacagacccggtggggtTTTTTCACTGGGGGTAAAGATAgtggaccaa
aactcgatggggattgatattacCtttttttCTTATGTCTTTGGATTTGA
ACTCcgttgttttcaagtcagaaaattcagtagggatTGAAAGATTTGCA
GTGAGAATCAGCTTATCAAAtcggacaaaaattagagtataattttccac
cagggcgatatttaggctatttttccagtgggaaggggttccagtgggtT
TGAGAGAAGGGGGTGTACAAAGATATCTTTACAGGTTCTGTCAATTTTCT
CCTTTAAACCATTAATGATATTTGAAATTTGCAGGGGAGTATGTTGGTCA
AACGAAGAAGAAAGTTCAAGAAAGATTAGATGCTGCGAAGGGAGGTGTTC
TCTTCATTGACGAGGCTTATGAGCTAGGTGAGTTGGTGTATGCGGTctac
ttgaataaaaatagcGTGAAAGTATCAACGAATAGTATTAAAGTATTATA
ACGAATTGCCCGCGTAAAGTTTACTTTCtgctattttgaaatgaaaattc
tttACTTTTTCTGCATTATCTCTTTCTCGTAAATAATTCAATTGTTTCCT
TTATTTTGATACGCATCAAGACTTGTTTCTTTAAATTCAGGGGATATTAG
AAAAAGCAAAATTACGCGtgataattttcattataattGTTCATTTTAAG
AGTAATATTTCGATATTTGTTATCTACAGTAATTTACCTAGCTCCTCTAC
TTAATGGATTAAACAAATCTTTCAATACTAGGCAAAGGAATGTATGGTGA
AGAAGCGTTGACCACATTGTTGGCAGCCATGACAGATCCTGAATACAAAC
TGGTGATTATCATCGCTGGTTATCCAAAAGATATGGAACAAATGTTGGCC
AGAAATGTCGGACTTAAAAGCAGGTGGGTTAATTTCACTGATATCGACCG
GATAGAATCTTGGACACTCTCAGCAAATAGAAAAAGagcaatttcaaaat
ggtataGCTAAAATTAAAAGACGGCTTCGAAACACCGTATGTGTTAgcct
gcacacatcccctctgatatgttttggtATAGGGGACGCGTATCGTATAT
GAAATTTTCGTTCGAGTGTTgcccccgtctttgtgtttttgagttttaga
taCTTGATTAGCCTTGTTAGTAAGCTTTATATAATTTCTAGATTTTATTT
AAACTTGAATTAAAGGCTTTGTAAAGATGTACGATAGTGTCGGCGGAAAA
TGATctgaaaatatttgtaaaattgaTCGAAAGTacgtctttctttcttt
ttttttttttttcaggtttacGCGTTACATGGACTTTTTGGATTGGACAA
GCGAAGATTGtgttaaatttttcatcaagaaaGCGGAAAATGACAATTTT
GCGATCGATGAACAAACGAAAAATATTGTTGGCAAAGGCTGTGAAGAGGT
TTGTTTTTCTCTATTacttctttcaaaaaatgtatcaaaatgtaTCAGAA
ATGTCAGCGATTATATCTGTGTTTTGAATGAATTATTTTCCATTATTATT
ACAAGCTTATTGCATCTAAGaagaattgaaaattaaattaggAAACGGCG
TATAAATTGTATCACTTTGACCTTTAATTTATCACAGAAAGTCATAATAT
GATTTTTCAACCAATGATAATTTCCTGGGAAATAAGTAAAAACACCATTa
agtaaaaaggaaaaaacgCACTAACATTTTGGCTAACTGAACATAGAATT
AATTTACTTTGTGCTCTTTTTATACTCATAATTCTGTGAATACATAGAAT
CTTGAAAAACcgagtaatattttttttccagttACGTTCATATCCTGGTT
GGGGTAACGCTCGTGACTTGATTGCCATGTGGAAAGTCATCATCGAGCAA
CGTGCAAGCCGTGTCGTGAACGCGCCCGAAGATCGAAAAACAATCACAAA
AGAAGATTGCCATAAAGCTGTCTCCAAAATGTTGTCTGAGAGAAAACCAA
AAGTGGATTCAAAAGAACATGAGCGAAGTCGGAAGAAAGATAAAGAAAGG
ATGATGTATGATCTGATGAAGCAAATGAGTAAGTTTTCAAGTTCATAGTA
TAAAGTTTATTTGCGTCTGCAAAGAAGCGGCCTATATAGTGAACtttttt
tGCGGGCCTAGATGACGtatattgtttttcaaaaattaaattaaataatG
ATACGAGAAAGACTTTCAATACCTTTACGAGTTTACGAGTTTACAAGTTT
ATTATATTCTAAGAATGATCTGTTCCgtttatttgagaaaaagacTGCAG
CTTTAACCCTTTAACCCAGAATGGCAGCGAGTTGAGTAGCAATTTAGCTA
AATATACCTTAAGGCTTGATTTAAAAGGGCATATAAAcaaaatgtttatt
aagaaatgatagaaaaaattttctaattgtACAAAACCATTGTCCCACTC
TCAAGCTCTACAAGCTTTTAAGCCAGTTTGAATCTTTGgattacaaaaaa
aagttttcacatttttcaaaaattacgcgGTGGAAAGGTTACCTTTATAG
ATGTTAAAGTAATTCAAGGTCCTTTTCCTGTTTCCCAGCGCTTGACGATG
CACAAAAGCCCGTTCAGATGAGTACCAAACaagaggtaaaaatcgaagaa
atcaaagaagaggggggagaggaagaagtcgaagagaagatggagaagat
aacgatgaaagaagaaaagaaagaagaagggagagatGCTGGTGTTCCTG
ATGAAGTGTGGGAAGAATTACAAAATGCGAAAATGCAAGAAGAATTAGCT
CGACAAAAATTGGAAGCAGAAAAAGAGAAGGCGGAACAGTAAGTAGAGAG
TTGTCATGAGTATTTACACCTGTTCCTTGCTGTCAGTTACCACTTACTAA
TGTGCGTCTTATTGTCTTCAATATGAATTGAGCTCCACAGACCAAAAGGA
CCAAAGATTGTAAAGCTCAATTCATATTGAACACAATAACGCTCGAATTT
AGTATTGTGAAACAGGCTCCTTTATCCAAATAAGTACAAGGAAACCCAGG
TGGCACATGacgttgcttcaacgttcatctaatgttcacaacgtccatat
aacgttagataaacgttgaaacaacgttgtgaaATATGTCGAATTTAAAT
AACCTGTATCGGATTCGAGAATAGTTTCAAGGTGGtgttatttcattttt
ccaaggcggtaaaaagttattactaaaatttccagggggtacaagactga
ttttagttcttCCCATTCGCTTTAAGGCTTGAAAAGGATCTTTCAAAGTg
tattttcgcaaattttgccTTTTTCCAGGCTGTATCCCCACATTTTcagt
aatttatttttaatttgaaaagtttCGTCCACCCCATGTATGGTTTTTTA
GTAGAACAGCTCATCAGTAATAACCAGCTCTGCTAAAAATTGCCCATTTT
AATGTTCCATAAAGTTAATAAGTTTGAAAAAGGTTTCAGAAGTATTCCCA
AAAAAGCTATTGAATAttataattttctgaaaaattcaaaTCCATTCAAG
GATATATTGCACGATGCTCAAAATACCCCAAACCATTTTTAATTCTTCAG
GCTAAAGTTATCAAATCCGAAAATTAATCcgtacattttaatttttttcc
atcgAGCGAATTTATTGGattgaaattttctatcaatgtTAATAAATAGG
CAGAAGGAGGCCAATGAGAAGGCCGAACACCAACTGAATGTCGAAGTCAA
AGTCGAAATGGAAAAAAGAGATCAGCTAGAGCTTCAAACAAAGTAAGTAT
TTTTCGAACATATTTAAATATAGATGCGTTCAGAAAAATCAGACAAAAGT
GTTCTTAGTTGCCAAGCTAACGCGGCAACTTTCTTTTCGAGATATTGAAT
TCCATGCTAggagatatattttctgaatttGACGTTTTTGTTATTGTGGG
TAGTTTaacatccgggggggggtcactcaCATGGTCCGACCAACGGCATG
TGCTGCCCTTAaagtaggtttttcgagaccctcaaAATGTaatgtaaggg
tgtacttttgatagagtgcactacaagggtctaTCTTTTAGttggataca
ctgtaagggtatgttTCTGAAGTATCTGTATAGTTCTGTTGACTCGTGcc
tattttgatttgttttgcacattcTGTCGACATCTCAGGCACATTTTGAA
TGGCTTCAGGAATAAGTAAGATATGCAACCAAACTAACTGTAAGGGTGAG
AAACGTTCGAtaaaatacactgtaagggtacctttttttcactgctcaag
ggctgcactgtaagTGAGTCCGCCGATTTcgaaagccaattttttggcgg
cacataccgtcgtttagaaacccccctcccccccgggTATAACATTTTCA
TGATTTATTTAAGTATAAACTAAAAGATTcctaaattttccattttcgaA
ATATTaccctacttttttttcaataaggTACATGTCTTACGCTCCGATAA
GTCTAAAGAAGattgattgatatttttaatggCATGTATGGCTATGACTA
GTCTATTTCTTATTTTCTATCTATTGTCTGATCTTAGGGAAGCCCAGGAA
GAGACTGCTTTACTGAAACAATTGCAAAGAGAACTCCATGAGGcaaagga
agaagaaaaaagacttCAACTTCAACGTGAATTGGAAGAGAGGAGGCGAA
AACAAGAAGAACTGAG

Coding sequence (CDS) from alignment at sc0000099_pilon:270785..276650+

>MSTRG.12843.3.p1 ID=MSTRG.12843.3.p1|Name=MSTRG.12843.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000099_pilon:270785..276650+ (Clytia hemisphaerica_ch_hm2_pilon)
aaggttCAACAAAAGGTAATCGAAAtgcttgaaaaacaaaaaacacaagC
CAATTTCGGGAATGCAGGTGCAATCAATAATTTGATACGAGCTGCAATCG
CCAAAGCTGCAACACGTCCATCACGACCTGATGGCAAGATGTTGTTGGAG
GTTTCGGACATAGATTCAGATGCAGACAAGGAGGACGATTCCAACGCTGA
TCCTTTTGCACCACTCAACAAACTGTATCGTATGGAAACTATTAAAGAGG
AGTTGATCCAAATAAAGAACACTTTCCAAGTCGCCAAAGATGAAGgcaTT
ATGATTGGGGACTAAaaggttCAACAAAAGGTAATCGAAAtgcttgaaaa
acaaaaaacacaagCCAATTTCGGGAATGCAGGTGCAATCAATAATTTGA
TACGAGCTGCAATCGCCAAAGCTGCAACACGTCCATCACGACCTGATGGC
AAGATGTTGTTGGAGGTTTCGGACATAGATTCAGATGCAGACAAGGAGGA
CGATTCCAACGCTGATCCTTTTGCACCACTCAACAAACTGTATCGTATGG
AAACTATTAAAGAGGAGTTGATCCAAATAAAGAACACTTTCCAAGTCGCC
AAAGATGAAGgcaTTATGATTGGGGACTAAaaggttCAACAAAAGGTAAT
CGAAAtgcttgaaaaacaaaaaacacaagCCAATTTCGGGAATGCAGGTG
CAATCAATAATTTGATACGAGCTGCAATCGCCAAAGCTGCAACACGTCCA
TCACGACCTGATGGCAAGATGTTGTTGGAGGTTTCGGACATAGATTCAGA
TGCAGACAAGGAGGACGATTCCAACGCTGATCCTTTTGCACCACTCAACA
AACTGTATCGTATGGAAACTATTAAAGAGGAGTTGATCCAAATAAAGAAC
ACTTTCCAAGTCGCCAAAGATGAAGgcaTTATGATTGGGGACTAA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.12843	MSTRG.12843	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.12843.3.p1	MSTRG.12843.3.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.12843.3.p1.exon1	MSTRG.12843.3.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12843.3.p1.exon2	MSTRG.12843.3.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12843.3.p1.exon3	MSTRG.12843.3.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12843.3.p1.exon4	MSTRG.12843.3.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12843.3.p1.exon5	MSTRG.12843.3.p1.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000099_pilon	genome	sc0000099_pilon:270785..276650 +

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MSTRG.12843.3.p1 (mRNA) -