MSTRG.1279.3.p1 (mRNA) -

Overview
NameMSTRG.1279.3.p1
Unique NameMSTRG.1279.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1187476..1190888+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1279.3.p1 ID=MSTRG.1279.3.p1|Name=MSTRG.1279.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3413bp|location=Sequence derived from alignment at sc0000006_pilon:1187476..1190888+ (Clytia hemisphaerica_ch_hm2_pilon)
TGTGAactcataatttttgaaattattttagtttaaaagaaattgttata
attttgaAGCAGGGAAATAAATATTCATTGCTGTTTTTAGACTATTAATA
TCCCTCTCTTTTGATCTGAAATCTTTCAATGGAGCCACGCCTAACATTTA
GACTTTAATgtattaattttaaaataatgtaGTGGTTTGCACGAGATGTT
CATTATCAACAGGATCTTAAAATGAATAGTGATTTGTCTGCAATGTCTTA
TTTATAAAGGTGAGTTTCGATTTCTATAATATACTTTTTTATGGATACGG
tttttttGTACCAAATTTGCATGTTTCATTTTCTAACATGGTGATAACAT
CATATTTTATTCTGAGATTCAGCGAAACTTAAAAGAATGTAATTTACAAT
ATTTGATGATTAGGACTTCTATTATGTCATCATAAGTTTTTGATGTCATC
TTTTGTTACTATAATTACTACAGTTTAAACAATTTATTGCTTTGCCATGG
AAACGTGATGCTCTCTATAAAACATGCATTCTATTAAGAGAACAGTTAAA
AACAATCTTTTTAGTTTCAATTATTTATGCCTTTAACTCACTCACTTTCT
CTCTGTTAATAGTTGACTTGTTATCTTATTTCAGAAGATATCTCTTGATG
GCTGGACaggcatttttaaagaaaaatctgCTCACTATCgctttgttttt
gttgaatattgaaaatgtgtttGTCTCACGTCCACCAATATTCTGGGATC
CCTACCATAAATTGTAAGTAGTTCAATTTCTTATCAAATATCTTTGTGAT
ATCCAAGTTTAACTTTGTTTTATTAACCTTCCTTTTTGTCTTAATTTTAG
GTTTTCCTGCAAGGATCCTATTGTGAATGtgaaagaaaatgatttgttGA
AATTTGTATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCT
TCAACCCTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGA
ATATGAAAATTGTGATGCTAGAAGTGGGTTAAATGAAAGACATCTATttg
tacaaaagaaattattttcattattaggAGATACTCATTTCAGTtgactt
aaaaattttaaaataagtcTTAATTTGGTGAAAGTTGTATATTGAAATTA
AATTACTACTTATTCATTTCTCTTAGATCATGACAACGTATTACTGAACT
GCACATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGCTCTT
TCACCTGACGCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGG
TAATAAACATTtcctaaaaaatctttttacaaaatgaaaaagtataGAAA
CTATTTGCTAAAGGTCAGAAATTAAATGAATTGATGCCATCAAAGTTTCT
CATTGAAATTCGAATTATTTCTCTTTTCAAATAGCTCCAAGTTATCGTAC
AAGCAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTG
ATGGTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaa
attcaagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGA
AGGTCAGTTGTTTATTAGTCATTTTAAGTCTTactgtcaaaaaaatttgt
ttcctACTGACAGTTTTTCATTCTCATGCAATTGTTAGGTTGACAATTTT
GGTAGAAATATGATGAAAACCTGTCCTTGCattcacattatcattgaaaa
aaacttttcttttccctTACAGCTTGTGGCAAGCAATGTGACGATTGGAT
TGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACAC
TTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATC
TCTAATAACCCTGCTGTTACAACAGGTACTTTAAGCACAACAGGTGCTTT
AAGCACAACTGGAAGTGTCAGCACTGTTTACACTGTTAGTACACTCAGCA
GCACCAGCACCACAAGTTCAAGTTCAACCAGTTCAGTCACAGTCAGTCCT
GTTCCAGGTAACTCAGTCAGTAATAATAAGTAATCTAAAAGCTTTGTTTA
TATGCTTAAAAGCTAGGTAGCACTTTGACAGTAAACTTATTCTTGAGGTA
TTTGCCCAGTATGATGTGTatttatattgaaaattttagtaacagacttt
ttcaagttttagtaAACTTTAGATAACTGGATAAATTGAGTTGTTTTAGT
TTACCTTGTACGTCCTTTTTCTTTCAGGTaaaaaaaCTGGCGAGGAAAAT
AATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATT
GATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGA
AAAAACGTCAGGAGAATTTTGTGGGTAAGTTCCCTTAAATTCTTTGCAtt
cttaaatatttctttttatatatgAGCTGACCAGTGCTCAATTAAGCCAA
TTATATATAGATAAATAGGAAAGTAGGAAAATTGGTAGAGGTACTTTTAC
CACAGCTAATACTTTTAATTAATATGACTTATATTGTCTTGACACAGGTT
ACGTCATCCGTTTTTTAGatagaatttctttttctttcatttcagacATA
GAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGA
CAATCGTAAAAGTAAAGTCACAAATTAAAATCATCAGTCCCTTCtataat
atttatttcattttttagaaatgttgataataaaaatttgtaaatatttt
tcttttgagcaTATTATTTATAAGATGTTGATAGTAGACCAAATTTATTT
TACCACGTTAAAATTCTGCattattctatttttattttgatatctGAAAC
AGTATATTGTATTACCCTATGTGTATTTTAtatgttgtatttttttttta
tcgcTTTAATAAAATGTTTTAGCTTGATTTCTATTCCCTTTTGAAAGTAT
GCAAAAGTATGGCATACTTCTTtcttctgaaaataaaaagcttCGTTATA
TTATGCTTTCATAGTCAAAAGACTTTCGCAAATTCCTCATTTTTTGATCt
atgaaatttagaaattgtTATTGCTCTAAGTTGAGGGCTATGGTACTACA
GATCTTTCTGTTGAGTGGGTAGTTGGATGAGTAAAATAATTCGATTTACA
TGTGTGTGAGTTTCGTTATCTTTATGTATTTCCAAGTATTTAGGAAAATG
GCACCtctatcaaatcaaaatattttatttatgagAACCTCAAAAGGATC
TGATTCATCAATCATTCTCTTTATGTCCTGATTCAATTTTAAGATTCATA
ATATATTTATGATTtatatagaaaaaaggatataaaaattagactactgt
actgtatgtggaa

Coding sequence (CDS) from alignment at sc0000006_pilon:1187476..1190888+

>MSTRG.1279.3.p1 ID=MSTRG.1279.3.p1|Name=MSTRG.1279.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6741bp|location=Sequence derived from alignment at sc0000006_pilon:1187476..1190888+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATCgctttgtt
tttgttgaatattgaaaatgtgtttGTCTCACGTCCACCAATATTCTGGG
ATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGtgaaa
gaaaatgatttgttGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAA
ACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACT
ACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCATGACAAC
GTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGATCAC
CCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAAACCT
ATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACATG
GTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAGCT
GAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAAGT
TATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGAC
GATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAA
CAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACT
GTCAAATCTCTAATAACCCTGCTGTTACAACAGGTaaaaaaaCTGGCGAG
GAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCATT
TGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATT
ATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCC
AAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAA
AGTCACAAATTAAATGGCTGGACaggcatttttaaagaaaaatctgCTCA
CTATCgctttgtttttgttgaatattgaaaatgtgtttGTCTCACGTCCA
CCAATATTCTGGGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTAT
TGTGAATGtgaaagaaaatgatttgttGAAATTTGTATGCGCAGATAAAG
ATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCT
TATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAG
AAATCATGACAACGTATTACTGAACTGCACATCAAAATATATGGTTACAC
AACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACA
CCTGGAAAAACCTATTATGTGATAGCTCCAAGTTATCGTACAAGCAACAT
GATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGAT
ATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaagat
ggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGG
CAAGCAATGTGACGATTGGATTGATCCTGTCGATAATGACTGTTACAAAC
AAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATGAA
AAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTaa
aaaaaCTGGCGAGGAAAATAATAAGGATGACTCATACAAATACATGGGCA
TCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATT
AGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGA
AAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACA
ATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACaggcatttttaaag
aaaaatctgCTCACTATCgctttgtttttgttgaatattgaaaatgtgtt
tGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTTTTCCT
GCAAGGATCCTATTGTGAATGtgaaagaaaatgatttgttGAAATTTGTA
TGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCT
TCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAA
ATTGTGATGCTAGAAATCATGACAACGTATTACTGAACTGCACATCAAAA
TATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGC
ACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGCTCCAAGTTATC
GTACAAGCAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACA
TCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatca
agaaattcaagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATT
ATGAAGCTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGATAAT
GACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAGTT
TAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTG
TTACAACAGGTaaaaaaaCTGGCGAGGAAAATAATAAGGATGACTCATAC
AAATACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCT
TGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATT
TTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGC
TTTCAATATGACAATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACa
ggcatttttaaagaaaaatctgCTCACTATCgctttgtttttgttgaata
ttgaaaatgtgtttGTCTCACGTCCACCAATATTCTGGGATCCCTACCAT
AAATTGTTTTCCTGCAAGGATCCTATTGTGAATGtgaaagaaaatgattt
gttGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCAC
ATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAA
CAAGAATATGAAAATTGTGATGCTAGAAATCATGACAACGTATTACTGAA
CTGCACATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGCTC
TTTCACCTGACGCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATA
GCTCCAAGTTATCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAG
TTGCAATGACACATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATG
TTTGTACTgatcaagaaattcaagatggTGATTGCAAGTTATGTGAAAGT
GAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGACGATTGGATTGA
TCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACTTT
TAAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCT
AATAACCCTGCTGTTACAACAGGTaaaaaaaCTGGCGAGGAAAATAATAA
GGATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATTGATTG
TAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAA
CGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCA
TATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAAAGTCACAAATT
AAATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATCgctttg
tttttgttgaatattgaaaatgtgtttGTCTCACGTCCACCAATATTCTG
GGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGtga
aagaaaatgatttgttGAAATTTGTATGCGCAGATAAAGATATCTCGTCC
AAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGA
CTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCATGACA
ACGTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGATC
ACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAAAC
CTATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACA
TGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAG
CTGAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAA
GTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTG
ACGATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGC
AACAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAA
CTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTaaaaaaaCTGGCG
AGGAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCA
TTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCA
TTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACT
CCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGT
AAAGTCACAAATTAAATGGCTGGACaggcatttttaaagaaaaatctgCT
CACTATCgctttgtttttgttgaatattgaaaatgtgtttGTCTCACGTC
CACCAATATTCTGGGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCT
ATTGTGAATGtgaaagaaaatgatttgttGAAATTTGTATGCGCAGATAA
AGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAG
CTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCT
AGAAATCATGACAACGTATTACTGAACTGCACATCAAAATATATGGTTAC
ACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCA
CACCTGGAAAAACCTATTATGTGATAGCTCCAAGTTATCGTACAAGCAAC
ATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGG
ATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaag
atggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGT
GGCAAGCAATGTGACGATTGGATTGATCCTGTCGATAATGACTGTTACAA
ACAAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATG
AAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGT
aaaaaaaCTGGCGAGGAAAATAATAAGGATGACTCATACAAATACATGGG
CATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCA
TTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATA
GAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGA
CAATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACaggcatttttaa
agaaaaatctgCTCACTATCgctttgtttttgttgaatattgaaaatgtg
tttGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTTTTC
CTGCAAGGATCCTATTGTGAATGtgaaagaaaatgatttgttGAAATTTG
TATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACC
CTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGA
AAATTGTGATGCTAGAAATCATGACAACGTATTACTGAACTGCACATCAA
AATATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGAC
GCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGCTCCAAGTTA
TCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACA
CATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgat
caagaaattcaagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTA
TTATGAAGCTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGATA
ATGACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAG
TTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGC
TGTTACAACAGGTaaaaaaaCTGGCGAGGAAAATAATAAGGATGACTCAT
ACAAATACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTT
CTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAA
TTTTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCATATCAACGAAG
GCTTTCAATATGACAATCGTAAAAGTAAAGTCACAAATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1279MSTRG.1279Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1279.3.p1MSTRG.1279.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1279.3.p1.exon1MSTRG.1279.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1279.3.p1.exon2MSTRG.1279.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1279.3.p1.exon3MSTRG.1279.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1279.3.p1.exon4MSTRG.1279.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1279.3.p1.exon5MSTRG.1279.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1279.3.p1.exon6MSTRG.1279.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1279.3.p1.exon7MSTRG.1279.3.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1279.3.p1.exon8MSTRG.1279.3.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1187476..1190888 +