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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000006_pilon:1187398..1190888+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.1279.2.p1 ID=MSTRG.1279.2.p1|Name=MSTRG.1279.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3491bp|location=Sequence derived from alignment at sc0000006_pilon:1187398..1190888+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaaagaagtgttTAAGCACATTTTAAAGAGCTCAATCATAtagcttt
tcttttttaattgaaaaaggCATACATTTGTGAactcataatttttgaaa
ttattttagtttaaaagaaattgttataattttgaAGCAGGGAAATAAAT
ATTCATTGCTGTTTTTAGACTATTAATATCCCTCTCTTTTGATCTGAAAT
CTTTCAATGGAGCCACGCCTAACATTTAGACTTTAATgtattaattttaa
aataatgtaGTGGTTTGCACGAGATGTTCATTATCAACAGGATCTTAAAA
TGAATAGTGATTTGTCTGCAATGTCTTATTTATAAAGGTGAGTTTCGATT
TCTATAATATACTTTTTTATGGATACGGtttttttGTACCAAATTTGCAT
GTTTCATTTTCTAACATGGTGATAACATCATATTTTATTCTGAGATTCAG
CGAAACTTAAAAGAATGTAATTTACAATATTTGATGATTAGGACTTCTAT
TATGTCATCATAAGTTTTTGATGTCATCTTTTGTTACTATAATTACTACA
GTTTAAACAATTTATTGCTTTGCCATGGAAACGTGATGCTCTCTATAAAA
CATGCATTCTATTAAGAGAACAGTTAAAAACAATCTTTTTAGTTTCAATT
ATTTATGCCTTTAACTCACTCACTTTCTCTCTGTTAATAGTTGACTTGTT
ATCTTATTTCAGAAGATATCTCTTGATGGCTGGACaggcatttttaaaga
aaaatctgCTCACTATCgctttgtttttgttgaatattgaaaatgtgttt
GTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTAAGTAGT
TCAATTTCTTATCAAATATCTTTGTGATATCCAAGTTTAACTTTGTTTTA
TTAACCTTCCTTTTTGTCTTAATTTTAGGTTTTCCTGCAAGGATCCTATT
GTGAATGtgaaagaaaatgatttgttGAAATTTGTATGCGCAGATAAAGA
TATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTT
ATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGA
AGTGGGTTAAATGAAAGACATCTATttgtacaaaagaaattattttcatt
attaggAGATACTCATTTCAGTtgacttaaaaattttaaaataagtcTTA
ATTTGGTGAAAGTTGTATATTGAAATTAAATTACTACTTATTCATTTCTC
TTAGATCATGACAACGTATTACTGAACTGCACATCAAAATATATGGTTAC
ACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCA
CACCTGGAAAAACCTATTATGTGATAGGTAATAAACATTtcctaaaaaat
ctttttacaaaatgaaaaagtataGAAACTATTTGCTAAAGGTCAGAAAT
TAAATGAATTGATGCCATCAAAGTTTCTCATTGAAATTCGAATTATTTCT
CTTTTCAAATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACATG
GTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAGCT
GAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAAGT
TATGTGAAAGTGAAGGCTGCTATTATGAAGGTCAGTTGTTTATTAGTCAT
TTTAAGTCTTactgtcaaaaaaatttgtttcctACTGACAGTTTTTCATT
CTCATGCAATTGTTAGGTTGACAATTTTGGTAGAAATATGATGAAAACCT
GTCCTTGCattcacattatcattgaaaaaaacttttcttttccctTACAG
CTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGATAATGACTGT
TACAAACAAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAGA
ATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAA
CAGGTACTTTAAGCACAACAGGTGCTTTAAGCACAACTGGAAGTGTCAGC
ACTGTTTACACTGTTAGTACACTCAGCAGCACCAGCACCACAAGTTCAAG
TTCAACCAGTTCAGTCACAGTCAGTCCTGTTCCAGGTAACTCAGTCAGTA
ATAATAAGTAATCTAAAAGCTTTGTTTATATGCTTAAAAGCTAGGTAGCA
CTTTGACAGTAAACTTATTCTTGAGGTATTTGCCCAGTATGATGTGTatt
tatattgaaaattttagtaacagactttttcaagttttagtaAACTTTAG
ATAACTGGATAAATTGAGTTGTTTTAGTTTACCTTGTACGTCCTTTTTCT
TTCAGGTaaaaaaaCTGGCGAGGAAAATAATAAGGATGACTCATACAAAT
ACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGC
CTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGT
GGGTAAGTTCCCTTAAATTCTTTGCAttcttaaatatttctttttatata
tgAGCTGACCAGTGCTCAATTAAGCCAATTATATATAGATAAATAGGAAA
GTAGGAAAATTGGTAGAGGTACTTTTACCACAGCTAATACTTTTAATTAA
TATGACTTATATTGTCTTGACACAGGTTACGTCATCCGTTTTTTAGatag
aatttctttttctttcatttcagacATAGAAAGGAATAACTCCAAGCATA
GCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAAAGTCACA
AATTAAAATCATCAGTCCCTTCtataatatttatttcattttttagaaat
gttgataataaaaatttgtaaatatttttcttttgagcaTATTATTTATA
AGATGTTGATAGTAGACCAAATTTATTTTACCACGTTAAAATTCTGCatt
attctatttttattttgatatctGAAACAGTATATTGTATTACCCTATGT
GTATTTTAtatgttgtattttttttttatcgcTTTAATAAAATGTTTTAG
CTTGATTTCTATTCCCTTTTGAAAGTATGCAAAAGTATGGCATACTTCTT
tcttctgaaaataaaaagcttCGTTATATTATGCTTTCATAGTCAAAAGA
CTTTCGCAAATTCCTCATTTTTTGATCtatgaaatttagaaattgtTATT
GCTCTAAGTTGAGGGCTATGGTACTACAGATCTTTCTGTTGAGTGGGTAG
TTGGATGAGTAAAATAATTCGATTTACATGTGTGTGAGTTTCGTTATCTT
TATGTATTTCCAAGTATTTAGGAAAATGGCACCtctatcaaatcaaaata
ttttatttatgagAACCTCAAAAGGATCTGATTCATCAATCATTCTCTTT
ATGTCCTGATTCAATTTTAAGATTCATAATATATTTATGATTtatataga
aaaaaggatataaaaattagactactgtactgtatgtggaa Coding sequence (CDS) from alignment at sc0000006_pilon:1187398..1190888+ >MSTRG.1279.2.p1 ID=MSTRG.1279.2.p1|Name=MSTRG.1279.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6741bp|location=Sequence derived from alignment at sc0000006_pilon:1187398..1190888+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATCgctttgtt
tttgttgaatattgaaaatgtgtttGTCTCACGTCCACCAATATTCTGGG
ATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGtgaaa
gaaaatgatttgttGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAA
ACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACT
ACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCATGACAAC
GTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGATCAC
CCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAAACCT
ATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACATG
GTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAGCT
GAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAAGT
TATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGAC
GATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAA
CAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACT
GTCAAATCTCTAATAACCCTGCTGTTACAACAGGTaaaaaaaCTGGCGAG
GAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCATT
TGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATT
ATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCC
AAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAA
AGTCACAAATTAAATGGCTGGACaggcatttttaaagaaaaatctgCTCA
CTATCgctttgtttttgttgaatattgaaaatgtgtttGTCTCACGTCCA
CCAATATTCTGGGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTAT
TGTGAATGtgaaagaaaatgatttgttGAAATTTGTATGCGCAGATAAAG
ATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCT
TATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAG
AAATCATGACAACGTATTACTGAACTGCACATCAAAATATATGGTTACAC
AACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACA
CCTGGAAAAACCTATTATGTGATAGCTCCAAGTTATCGTACAAGCAACAT
GATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGAT
ATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaagat
ggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGG
CAAGCAATGTGACGATTGGATTGATCCTGTCGATAATGACTGTTACAAAC
AAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATGAA
AAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTaa
aaaaaCTGGCGAGGAAAATAATAAGGATGACTCATACAAATACATGGGCA
TCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATT
AGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGA
AAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACA
ATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACaggcatttttaaag
aaaaatctgCTCACTATCgctttgtttttgttgaatattgaaaatgtgtt
tGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTTTTCCT
GCAAGGATCCTATTGTGAATGtgaaagaaaatgatttgttGAAATTTGTA
TGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCT
TCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAA
ATTGTGATGCTAGAAATCATGACAACGTATTACTGAACTGCACATCAAAA
TATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGC
ACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGCTCCAAGTTATC
GTACAAGCAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACA
TCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatca
agaaattcaagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATT
ATGAAGCTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGATAAT
GACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAGTT
TAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTG
TTACAACAGGTaaaaaaaCTGGCGAGGAAAATAATAAGGATGACTCATAC
AAATACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCT
TGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATT
TTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGC
TTTCAATATGACAATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACa
ggcatttttaaagaaaaatctgCTCACTATCgctttgtttttgttgaata
ttgaaaatgtgtttGTCTCACGTCCACCAATATTCTGGGATCCCTACCAT
AAATTGTTTTCCTGCAAGGATCCTATTGTGAATGtgaaagaaaatgattt
gttGAAATTTGTATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCAC
ATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAA
CAAGAATATGAAAATTGTGATGCTAGAAATCATGACAACGTATTACTGAA
CTGCACATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGCTC
TTTCACCTGACGCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATA
GCTCCAAGTTATCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAG
TTGCAATGACACATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATG
TTTGTACTgatcaagaaattcaagatggTGATTGCAAGTTATGTGAAAGT
GAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTGACGATTGGATTGA
TCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACTTT
TAAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCT
AATAACCCTGCTGTTACAACAGGTaaaaaaaCTGGCGAGGAAAATAATAA
GGATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATTGATTG
TAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAA
CGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCA
TATCAACGAAGGCTTTCAATATGACAATCGTAAAAGTAAAGTCACAAATT
AAATGGCTGGACaggcatttttaaagaaaaatctgCTCACTATCgctttg
tttttgttgaatattgaaaatgtgtttGTCTCACGTCCACCAATATTCTG
GGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCTATTGTGAATGtga
aagaaaatgatttgttGAAATTTGTATGCGCAGATAAAGATATCTCGTCC
AAACCAAATGCACATTCTTCAACCCTTCACGAAGTAGCTTATCTTCTAGA
CTACACAAAAGAACAAGAATATGAAAATTGTGATGCTAGAAATCATGACA
ACGTATTACTGAACTGCACATCAAAATATATGGTTACACAACACCGGATC
ACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCACACCTGGAAAAAC
CTATTATGTGATAGCTCCAAGTTATCGTACAAGCAACATGATTAATAACA
TGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCATTTAAAG
CTGAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGATTGCAA
GTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGTGGCAAGCAATGTG
ACGATTGGATTGATCCTGTCGATAATGACTGTTACAAACAAAGACTATGC
AACAATACACTTTTAAATACACAGTTTAAAGAATATGAAAAGATTGACAA
CTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGTaaaaaaaCTGGCG
AGGAAAATAATAAGGATGACTCATACAAATACATGGGCATCGGTATTGCA
TTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCA
TTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATAGAAAGGAATAACT
CCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACAATCGTAAAAGT
AAAGTCACAAATTAAATGGCTGGACaggcatttttaaagaaaaatctgCT
CACTATCgctttgtttttgttgaatattgaaaatgtgtttGTCTCACGTC
CACCAATATTCTGGGATCCCTACCATAAATTGTTTTCCTGCAAGGATCCT
ATTGTGAATGtgaaagaaaatgatttgttGAAATTTGTATGCGCAGATAA
AGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAAGTAG
CTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGATGCT
AGAAATCATGACAACGTATTACTGAACTGCACATCAAAATATATGGTTAC
ACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACCTTCTTTCA
CACCTGGAAAAACCTATTATGTGATAGCTCCAAGTTATCGTACAAGCAAC
ATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGG
ATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaag
atggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGCTTGT
GGCAAGCAATGTGACGATTGGATTGATCCTGTCGATAATGACTGTTACAA
ACAAAGACTATGCAACAATACACTTTTAAATACACAGTTTAAAGAATATG
AAAAGATTGACAACTGTCAAATCTCTAATAACCCTGCTGTTACAACAGGT
aaaaaaaCTGGCGAGGAAAATAATAAGGATGACTCATACAAATACATGGG
CATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTTCTTGGCCTGGTCA
TTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAATTTTGTGGacATA
GAAAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGA
CAATCGTAAAAGTAAAGTCACAAATTAAATGGCTGGACaggcatttttaa
agaaaaatctgCTCACTATCgctttgtttttgttgaatattgaaaatgtg
tttGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGTTTTC
CTGCAAGGATCCTATTGTGAATGtgaaagaaaatgatttgttGAAATTTG
TATGCGCAGATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACC
CTTCACGAAGTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGA
AAATTGTGATGCTAGAAATCATGACAACGTATTACTGAACTGCACATCAA
AATATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGAC
GCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGCTCCAAGTTA
TCGTACAAGCAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACA
CATCTGATGGTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgat
caagaaattcaagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTA
TTATGAAGCTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGATA
ATGACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACAG
TTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTGC
TGTTACAACAGGTaaaaaaaCTGGCGAGGAAAATAATAAGGATGACTCAT
ACAAATACATGGGCATCGGTATTGCATTTGCATTGATTGTAGGTCTCGTT
CTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAAAAACGTCAGGAGAA
TTTTGTGGacATAGAAAGGAATAACTCCAAGCATAGCCATATCAACGAAG
GCTTTCAATATGACAATCGTAAAAGTAAAGTCACAAATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000006_pilon | genome | sc0000006_pilon:1187398..1190888 + |
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