MSTRG.12785.1.p1 (mRNA) -

Overview
NameMSTRG.12785.1.p1
Unique NameMSTRG.12785.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000098_pilon:580943..587253+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12785.1.p1 ID=MSTRG.12785.1.p1|Name=MSTRG.12785.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6311bp|location=Sequence derived from alignment at sc0000098_pilon:580943..587253+ (Clytia hemisphaerica_ch_hm2_pilon)
CCAAGCTCAGTCAGAAAACTGAAATCAGTGAAAACTAAATATTCACATGT
ATTGGCTTTTTTCGTAGGATTGCCAACTCGAATCTCCAGAGtaaatttca
aagataaaaatgGTAGCCTTCTTTAGTGAAACAGCGTAAGCTGAAAGAAG
GTGAGATTAAACTGTGGTTGAAGATTGATACTTTTACCTATGCCTATCTT
AGCAATCTTTCAACAATAATTGAAGAAATATGGATGATTCAATTCTTGAA
TGTTCTAATTATGTTATTTTCAGGGGAGATGAGTGCAGATCTTTGTTGGT
CGATTGTTCGCAAGAACTCTTGCTTCCTTGTCAAAAGTCTTGGAAAGACA
TTGACTAAAGTAGGTAAAACATTTAAATTGTGTAATTTTGGTTTGGAAAT
GTTCAATGATGTCTGTTTCAAGACGGGACTGACAATGATGATACCTTATT
TTACTGagaacataatttttttctccattttcAcGAGTTTTTGTAGTTTG
ATAACTAGatatgacagcaaaactttaaTATTGTTTTAGGAACCTAACAA
TTTGTCTGGAGTCAATAACTTTGCCTCAAATGGATACATCAACAAAAAGG
TataaattcaactttttgtgtTTATGGAGTGACTTGCTCATTTCACTGCG
CTGTTATGCTAGTTCTTACTAGGCATCCAGGATGGGATTCCTGTTCTTTT
ATAACTGAAGATTCTCTGTTGGATGCAAAGATTAAGTTTGACACTAGTTT
GATGCTGTTTCACATCTATTGACTCAGCAATAGGGTTTCAAGACATTCAA
GATCTTATCTTTTAGATTTAGTTTGTGTTTTCTCTTTGAGTTCAGTAACA
CCTGTTCTGTCTTAAAGTTATAAATTATAATGTAAAACAAGAACCTTAAG
TCCTAAAgaatgttcaaaaattttagaacaGCACAGCCTTAGGCAAAATT
TTCTGTGGTTCTtacgaaaaatcttttttctgtcAATGATGTTGATTCAA
GACGGGACTGATTATGATGATCCTTTTTTAAactgagaaaaaaactttca
cctTTCCCAGAAATTATTGTGTCATGCAGCTCTGGAAGAATTAGGAAAAT
TCTGgaataaaacatttaaaaagaaaatgatcgCAATGATGATGATTAGT
TTTTCTTACTCCAATATTTATGGTGATACAACTTTTATTTCACCTCTGAC
AAACTGAATTGCATAATATATCTTCTGAATGTTAGAACATTTGACAAATA
TTGATTTCATCTTAGAAAATCATTATTTGCATCCAGGATGGGATTCCTGT
TCTTTTATAACTGAAGATTCTCTGTCGGATGCAAAGATTAAGTTTGACAC
TAGTTTGATGCTGTTTCACATCTATTGGCTCAGCAATAGGGTTTCAAGAC
ATTCAAGAAGATCTTATAGATTTAGTTTGTTTTCTCTTTGAGTTCAGTAA
CACCTGTTCTGTCTTAAAGTTATACGATGGCAGAAGGCAAAGTTGTCGAT
tgcatctattttgattttgcaaaagcgTTTGACACCGTCCCTCACAGGAG
GTTAAAGAAAAAACTGGAATGTTACGGGGTAGGTGGAAGTCTACTAAACT
GGATAACATCGTTTTTGTCAGATCGCAAGCAGCTGGTCAAAGTCAACTCA
GCCAAATCAACAACTAACCCTGTCGTAAGTGGGATTCCtcaaggaagtgt
acttggacCTCTGCTATTTgtcatttacatcaatgatttgCCAGACAAAG
TAGTTTCGGATGCATTTCTCTTTGCTGATGACACGAAAATAGTGAAGACT
ATAGATTCGGTAGAAGACTCTATCGTTGTACAAAGAGATATCGATGAAAT
GGAAAAGTGGTCTCAGGATTGGTTACTCACGTTCCATCCTGATAAATGTC
ATGTCTTAACAATAGGTAAATTCGCCAACATCAAGCATGCACACAGATAC
CAGCTTGGAGGTAAtgaacttgaacatgtttttgaagaaaaagacctcGG
CATCTTGATCGATTCGGAACTAACTTTCGAGGAGCATATATCCAAACAGG
TTAACAAAGCAAATTCAATCCTTGGAGTTATCAAAAGAAGTTTTAACGAC
TTGAGTCCTTCGGCACTTTGTACTCTGTACACCACCTTTGTCAGACCTCA
CttggaatatgcacaatcagtaTGGCAGCCAAAATTACGTCGTAGTATAA
ACTTGATTGAAGGTGTTCAAAGACGGGCGACAAGACTGATTCCTCAATAT
CGTAATCTCCACTACGAAGAACGTTTAAAAAGACTCAAGCTTCCATCTCT
TGAGTTCAGAAGGCTTTTCAGTGATATGGTGCAAATAtataagcatattc
atttttacgaCCCACAGACAACTCAgaacaagtttgttaaaaaatccCGT
CCAACCAGATTCCATGATCATGAATTTGTTCCAAACTTTGCTGATGATGG
TTTTCGTGGGGCTCAGACGAAATCTTTCTACTATAGATCGATCCCAACAT
GGAATGCACTACCGCGATTTGTCATCAAGTCGACCTCAATCAAATTGTTT
AAAGAAAGCCTAAACAAAGCGTGGGAAAAACACCAACTAAGATACTTGAC
ATATTAACATTGTAATTAGAAATCGGTTCGTAGAGGTCCACCTCGGGCCT
GTGAGCTTGTATacatcataataataataataataataaattataatgta
aaacaagaacatcaagactaaaaaatgttcaaaaattttagaaccGGCCG
TGCGGCCTTAGCCAAAATTTTCTGTGGTTCTtacgaaaaatctttttttg
ttcaatgATGTTGTTTCAAGACGGGACTGATTATGATGATCCTTTTTTAA
ACTGAGAACAAAACTTTCACCTTTCCCAGAAATTATTGTGTCATGCAGCT
CTGGAAGAATTAGGCAAATTCTGGAATAGtacatttaaaaagaaaatgat
cgCAATGATGATGATTAGTTTCTCTTACTTAAAATATGGTGATACAACTT
TTATTTCACCTCTGACAAACTGAATTGCTTGATCAGAGTATTTTGCCCTG
TCCATGTATCCCGACTGTAACTTCAAACTCTCACTATCACTTCTTTCATA
TTTTATATTTCGAACACCTTTAACCatattttttcctgaaaaaattaTAC
TGGCTCAGCATTTATTGTAGAAAATTTGCACAACTAAATTTTGGATCATT
CTGAAATTAGGCATAGCTAGTTTTGATATGCAATAATGATGATTAGTTCT
TCTTACACAAATCATGGTGATGCAACTTTATATTTCACCTCTGACAAACT
GAATTGCAGAAGTCTGACAGCTAACttgttacacatttttttcttccatt
tgaGCTCCTTAAATTTTGGCTGAGCCAGGGAGTggtactaaaatccaaga
cacatgagtactaaaaggatttttgacatacccccacctaatttttgaaa
aaggaattttagtacacatgaactaaattttttttgacattttagcataG
TGGCCACCTAAGTTAGCCTTATTTTGGAATTCGGTTCAAAGAATGGGTCT
TTTGACCTTCaaaaaaaTGCCAACTCTGGTTATTTAAGCTGTCCATGAAC
CTGATCTATCTATTCTACTCTAGATAAAGACTCAGAAACAGCCAAGACAC
TTTTGCTCTGCTCTACTTTAGTTATTGCAAAGCTTGATTGGTTATTATTC
ACCTCTAGTTTACAGCTTGCCATTCCTTTTCTATTCAGTTAATCATGGTT
CTTTACATAAACAAAGCATTCaactttgaaaacattttttattccttAGT
ATATAAATGCAGAAcattaaatacacccctgtttcacagcccaggtggaa
cctttttcctcagtggggataaaaattcctattgaaatgctaatggggat
agaaattctattgatccaaggttaaaaatcccattggggatggtttttga
gtgcaatttttaaacatagtatttcgagtggggatgaaatcaaatttaat
ttcctagtggggatgaaattcaagggtattttcccacctggaaggaaatt
tttgcttaatttgtgacacaggggtgtttaaatcTTATGTAGAAagttgt
tattttttcattttgcctaaaatgctcgttcaatagttaaatttcctaaa
atttggtaaattttagtaccgtacacatggtactaaaatgcttagtacac
atggtactaaaatgcgctaaggctttttttgtaataccaccacatgacta
aaggtcatgatgtttgaaattttagtattcccccccccTGGCTGAGCCTA
GATGTGCTTgtacttatgttcttataaactgtgttcaaataaaaaacata
ttcaattcattttgatatttcagccctTTTAAGTTGAGtgtttaaaaata
aagtctctctCAAAAGAGGTATGGTGATATGCAATAATGATGATTAGTTT
TTCTTACTCCAATATTTATGGTGATACAACTTTTATTTCACCTCTGACAA
ACTGAATTGCATAATATATCATCTGAATGTTAGAACATTTGAAAAGTATT
GATTTCTTCTTAGAAAATCATTGTTTGCATCCAGGATGGGATTCCTGTTC
TTTTATAACTGAAGATTCTCTGTCGGatgcaaaaattaagtttgacACTA
GTTTGATGCTGTTTCACATCTATTGACTCAGCAATAGGGTTTCAAGACAT
TCAAGACCTTAtagatttgttgttttttctttgagTACAGTAACAGCTAA
AAAGATTGTTTTGGCTTGAATGTAAAGGCCTGGAAGCCGACTATTCTCAT
TATAGTATGATTGTAGCGTGCAAACCATGCCGAAAGTGACATGAGTGTTT
tctgatttggaaatttttactATAATTGTTCAGATCCTGGACACTCATAA
CAGCTTTTGTCAGCATAATAGGTTTTTATTGTTGAACCtgtctgaaaaga
aaatttaaaactggCAATCTCTGCTGAAAGTTTCTTATATAGTGGGGCTT
TTCATTCACAAATTGCCAAGATATAGAATCAACAGCCAATTTTCAATGAA
GTTCTTTAAATTGTAGCCTTCTACTGGTGCTGTTGATTCAACAATCTTTT
GCATCATTCCTTATTTTCTTGCTAAAGCTCACTCACAGTGATGTGCTAAT
TAGTAACGAAATGATTTTTCTACACAACGTCCTCTTTTTTAGACAGTTGG
TGTAGATGCTGACCCAAGTGGCAAAGGAGTCGTCCTTTCTATTCGCAAAT
CAAAAAGTAAGTGGCACTGCATCCTTTAATTATTTTGCTTCTATCATGGA
GAGGTAAGTTCTGACTTAAACTTCAGTGAATTATCGATCATCTTTGACCA
TCAGTCATTGGGGCATGGAGTCCTGTAAAGCCTGAAGAGCTAGATGGAGT
GATCAAGCTATTCCAAGCAAAAAATGAATTATAAAATTGTTggtattgtt
ttcaaaaagcagCCAGACTTCCAATTGGTTGAGTGCTAGAATTCTATTTT
AACGTTCCGTGGCCTTCGGGAGGATTTCCTACTTAACAGCACATTTTTTC
GGCGGAAGCATGCTAGATCTATGGCTATAGGTAGCAACTTCTCAAattaa
tagaaaatattttcctttttcagatGGTAACAAACCAGCCAAATCTGTTA
GCCGAACCACTGTCCGTGGAAGCCGACACTCCATTAAAGTTATCCGAGAT
ACTTTAAACAAGAGCGAGTACCGCAAAGATCTGTCTGACGTATGTGTTTT
ATCTTGTGTGCACAACATGGTTCGGGGTTCTGACGGATATGACTAGAGTA
CTTGGAGGTGTCTTTTCTTTGGAATATTTCTCCTTGAGGCTTCGGGCCCT
TGTAATGGAGACATCAAATAAAAATAGTGAATTTTCTTTAGATACTCATC
ACAATTTATATCATTTACTCaataaatttaatgttttttttcacagAAGC
TACAAAGGCTTGGAAGCCGACTATCTTTACTTTAGTGTAATTGTAGCGTG
CAAACCAACGCCGAAAGTGATCTCTTGTGTTTTCTGATTTCATCACTAAT
TCAATAGGGATTGAAATCCTGGACACTTGAAACAGATTTCAATTTCACGA
AAGGTTGTATTTTTAAAGTCGTTCCTGTtccaagaatttttcaaaatcag
tttGTTTCCTCCCTTAGATTGCCATTCGACGTGCATCGGCCATCATCCGA
AGCCAAAACACTTCCGCCGCAAAAAAGCAAAGATCCCGAAGAAAGAAGAA
CTAATTTATTCTCACGAAATAAATCCCCCTCCTGTAAATCACTTCTCTTT
TTTGTTTCGTT

Coding sequence (CDS) from alignment at sc0000098_pilon:580943..587253+

>MSTRG.12785.1.p1 ID=MSTRG.12785.1.p1|Name=MSTRG.12785.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0000098_pilon:580943..587253+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTGCAGATCTTTGTTGGTCGATTGTTCGCAAGAACTCTTGCTTCCT
TGTCAAAAGTCTTGGAAAGACATTGACTAAAGAACCTAACAATTTGTCTG
GAGTCAATAACTTTGCCTCAAATGGATACATCAACAAAAAGACAGTTGGT
GTAGATGCTGACCCAAGTGGCAAAGGAGTCGTCCTTTCTATTCGCAAATC
AAAAAatGGTAACAAACCAGCCAAATCTGTTAGCCGAACCACTGTCCGTG
GAAGCCGACACTCCATTAAAGTTATCCGAGATACTTTAAACAAGAGCGAG
TACCGCAAAGATCTGTCTGACATTGCCATTCGACGTGCATCGGCCATCAT
CCGAAGCCAAAACACTTCCGCCGCAAAAAAGCAAAGATCCCGAAGAAAGA
AGAACTAAATGAGTGCAGATCTTTGTTGGTCGATTGTTCGCAAGAACTCT
TGCTTCCTTGTCAAAAGTCTTGGAAAGACATTGACTAAAGAACCTAACAA
TTTGTCTGGAGTCAATAACTTTGCCTCAAATGGATACATCAACAAAAAGA
CAGTTGGTGTAGATGCTGACCCAAGTGGCAAAGGAGTCGTCCTTTCTATT
CGCAAATCAAAAAatGGTAACAAACCAGCCAAATCTGTTAGCCGAACCAC
TGTCCGTGGAAGCCGACACTCCATTAAAGTTATCCGAGATACTTTAAACA
AGAGCGAGTACCGCAAAGATCTGTCTGACATTGCCATTCGACGTGCATCG
GCCATCATCCGAAGCCAAAACACTTCCGCCGCAAAAAAGCAAAGATCCCG
AAGAAAGAAGAACTAAATGAGTGCAGATCTTTGTTGGTCGATTGTTCGCA
AGAACTCTTGCTTCCTTGTCAAAAGTCTTGGAAAGACATTGACTAAAGAA
CCTAACAATTTGTCTGGAGTCAATAACTTTGCCTCAAATGGATACATCAA
CAAAAAGACAGTTGGTGTAGATGCTGACCCAAGTGGCAAAGGAGTCGTCC
TTTCTATTCGCAAATCAAAAAatGGTAACAAACCAGCCAAATCTGTTAGC
CGAACCACTGTCCGTGGAAGCCGACACTCCATTAAAGTTATCCGAGATAC
TTTAAACAAGAGCGAGTACCGCAAAGATCTGTCTGACATTGCCATTCGAC
GTGCATCGGCCATCATCCGAAGCCAAAACACTTCCGCCGCAAAAAAGCAA
AGATCCCGAAGAAAGAAGAACTAAATGAGTGCAGATCTTTGTTGGTCGAT
TGTTCGCAAGAACTCTTGCTTCCTTGTCAAAAGTCTTGGAAAGACATTGA
CTAAAGAACCTAACAATTTGTCTGGAGTCAATAACTTTGCCTCAAATGGA
TACATCAACAAAAAGACAGTTGGTGTAGATGCTGACCCAAGTGGCAAAGG
AGTCGTCCTTTCTATTCGCAAATCAAAAAatGGTAACAAACCAGCCAAAT
CTGTTAGCCGAACCACTGTCCGTGGAAGCCGACACTCCATTAAAGTTATC
CGAGATACTTTAAACAAGAGCGAGTACCGCAAAGATCTGTCTGACATTGC
CATTCGACGTGCATCGGCCATCATCCGAAGCCAAAACACTTCCGCCGCAA
AAAAGCAAAGATCCCGAAGAAAGAAGAACTAAATGAGTGCAGATCTTTGT
TGGTCGATTGTTCGCAAGAACTCTTGCTTCCTTGTCAAAAGTCTTGGAAA
GACATTGACTAAAGAACCTAACAATTTGTCTGGAGTCAATAACTTTGCCT
CAAATGGATACATCAACAAAAAGACAGTTGGTGTAGATGCTGACCCAAGT
GGCAAAGGAGTCGTCCTTTCTATTCGCAAATCAAAAAatGGTAACAAACC
AGCCAAATCTGTTAGCCGAACCACTGTCCGTGGAAGCCGACACTCCATTA
AAGTTATCCGAGATACTTTAAACAAGAGCGAGTACCGCAAAGATCTGTCT
GACATTGCCATTCGACGTGCATCGGCCATCATCCGAAGCCAAAACACTTC
CGCCGCAAAAAAGCAAAGATCCCGAAGAAAGAAGAACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12785MSTRG.12785Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12785.1.p1MSTRG.12785.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12785.1.p1.exon1MSTRG.12785.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12785.1.p1.exon2MSTRG.12785.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12785.1.p1.exon3MSTRG.12785.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12785.1.p1.exon4MSTRG.12785.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12785.1.p1.exon5MSTRG.12785.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12785.1.p1.exon6MSTRG.12785.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098_pilongenomesc0000098_pilon:580943..587253 +