MSTRG.12780.3.p1 (mRNA) -

Overview
NameMSTRG.12780.3.p1
Unique NameMSTRG.12780.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000098_pilon:540041..543459+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12780.3.p1 ID=MSTRG.12780.3.p1|Name=MSTRG.12780.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3419bp|location=Sequence derived from alignment at sc0000098_pilon:540041..543459+ (Clytia hemisphaerica_ch_hm2_pilon)
agtttgatTTATCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTCC
ATGTTCTTCGCTGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTGG
TGATAAGTGAGTTTGCATTATGGTGTTTTTAGAGGAATAGACGATAAGGA
CACGCCTATGAATTCAATTATTTTACTCTCCAACTAATGGACTTTTAACA
TTCgtgatttgattgcgttcgattgaaatcatagtgtcctccagggtttg
ttccccccatcaaattcttgatttttttaaatctcccccctctttttttc
cccctatgacttttcagttttttagtttcccccctcttttttgctttccc
ccagaaaattctgaaaatatcagttccccccatatacccgtataaatttc
tcaaatttcaacctaacacaaacgtaaaattttgcttcaaaaggaatact
agacaaaatagaacgaaaaatTGGTTAAtctttcaatcatgatctaatca
catgatatcatgtggactgacctttgttgctgagataaaattgaagtgat
ttcacacttccccccaccaaatttgccaactttcgatgttttcccccctc
tttttttccccccctttacttttcaaatttttattttttcccctcaccct
ttcAAAATTGGAACATTggttccccccccccccttaaggggggaggacac
tatggaaATTCCCTGGCTTTAACAATAAAATCCAAAAACGCTTGAAATAG
TGTCTTTCAATTCAAAACCTTTGAGGGGTTTACACAGATATAAGCTTCAT
AAAATAAACCCTGTAGAAAGTCAAAATCTTCGACccgatttttctgaaat
ttggtaTCCTAATGAGACCGGTACTATATCCACCGCGTACCACTTAAAAA
CTCccattaaaaaatggcaaatataattgagtttcagatttcaaatacAA
CTCATTGGATAGTGAACGTATATTAGTTCTCTTTGCTTGTTTCAGGAGTG
CAATATGTTTTtacttcaaaaatattattagcGTTCaaatataacttttg
ttttcaaggtaTGGTCGAAGTAAAGTAATGAAGCCTGCTACGATCATCTC
CCTCCTCATTGCTTTCCTAAGTGCGTTTTCACCAAACTTCTGGGTCTTCG
CTATCGGCCGCTTCCTACTCGGCCTCTTAGCGCCAGGTACCGTGGTCATG
TTTTTCGTTGTAACATCAGAGATGACAGGACCGCGTTATCGGCCCCTTGC
TGGTATCATTCTATGGTTTTTCTTCACGATTGGGTTGGTGATTCTCGGTC
TTGTGGCGATGAGTGTTCCAACGTGGAAAATGTTGATGGTTTATTCGACA
GCTCCTTATTTTGTTTTGCTCATTTTCATCTTGTAAGTTGCCTTCTTGTT
TGTAAGTTTAGATTGCCTAACAATTCTACTAGTGGGGCTTTTAGAagtat
tttgattgtttttaccTATATTATTTACCTGTCTTCTTTCTGACTTAGCT
CTCTTTGAACTGAACGGATTTTAAGGAGGATCGAATCGAAAGCCACTGCT
TTGCGGCACCGTTGCCTTAGGCCACTCTTTCTTTACATAAAGCCCAAGAA
ATTAATACTCCGGATAGTGACAAGATATTGAAATTCTTTCCTTTCTTTCA
GTTTTCTTCCCGAGTCTTTGCGCTGGTTATACGTCAACAACCAGGTGCAA
GAAGCCACCAAACTCATCAATAAGATTGCTCGCATTAATGGCAAACCTAA
ACCAAAGATTTATCTGACACCGCCCAAACCTCTACACGACAAAGTCAGCC
CTCTCTTGTTGTTCAGTTCAGCAGAAATGTGTTTGAAATCACTAAATATC
GGGTTTGCTTGGTGAGTTTGTATTATAATTCCGAAAAGTAAACAGGAGAA
TTCACGTTTGTATtgtaatttcaaaaacaaaaaaggggaATGCTGATTCA
TATCATCCACAAATATCTCTTTTAATGAATTTCATAAAGCCGACACTTAT
CGtgttactttgaataaacgcccccttcttttaaacacccCCTCGAACAA
ACGGCCctcctaaaatccaaaaatccaaaaaaattaataagcgtccgggg
cgtttatttgaaataataagGTACATCACCCGGTAAACTCGAGTGTAGAG
AGTTAATCTTCGTGACTGAAAAgttgtattattattttttttttaagtat
ggttaaaagtggaaaaattgaattgtttcttctttcaattttgaaggTTG
GTCAATGGTCTTGTTTACTATGGAGTATCATTATCAGCTAAAGATTTTAC
TGGAAATTTCCATCGCGATTTCATTTTGTCGAGTCTTGTAGAATTTCCTG
CTGCTGTCATCGCTGTTTTGGCTTCAATGTAGTAAGAAATCTTTTTCTTG
ATAGAAACTTGTTTTGATGACATCGGTGGATGCGCTTCTAGCTGTGGGAG
AGACTTTTGCAGTTCTTAGAGAATTGAATTTACACgacaaaaacttgatt
tttaggaaaattatattttttgtgaGATTAAACTTTTGCGAATTAGGTTT
TCAGAATATTTCGCGGAAATTGCttttgcgaaagtttcttcccctAATGT
ACCTAAGCTAAGTTATTTAAAGGAATGAACAGGATTTTCTTAATCTTTAA
GTCACGTGATCGAGAGTCAACTGTTGTATGTATTCACGTTTGACCATTTA
TAACTTTGTGAATTTTACCATGGTTTTTAGTCTTGGTCGTAAGAGAACGA
CACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTTGGTGGTCGCT
ATTGATGAAAAGACTGAAGACAAACGTAAGTCACAATCTTCTAATATCTA
CAGCCGGACAGAGCTGTGGACAAAGATTACAGTTTGGAATCGAACTAGAA
TCAGGATATGCCTTGGAAATTTTAGTCACTATTTTATCCTACCAAATCAA
TTTGTTTTAGATGATCGAACAGATACGTAGAACGCCTGATAAGTAAATTA
CAATATTACAATTCTTTTTTCTCAGATTTGATCAATGTGCGATTAACGTT
AGGCctgtttggtaaatttttcaTCACACTTgcttatgacgtcatttatA
CATGGACTGTTGAGCTTTACCCTACGCAAATCAGGTGAGAAATAAACTTA
ACAGAAGAAAAGATTGCATTAGAGGTGTTGAGGAGTTCAACTGTTTGAAT
CTAGAGGACAACAAAGACCCCCGCTCGTTCAAAGTCATCCTCAATTTAAT
ACTCTTTTGTACCAAATAGGGCATACAAACCATTTCTAGGATATCCAATC
AAGCTTTCTGAAAGTTAACCAGGATTTGTCTGTCTGACTCAAGTTTCTTC
GAATCTGATAGCGTTAAGACAGGTTCTACCTAAACGTCCCCTTTTCAATT
ATTTGAGAACTTCTAAAAG

Coding sequence (CDS) from alignment at sc0000098_pilon:540041..543459+

>MSTRG.12780.3.p1 ID=MSTRG.12780.3.p1|Name=MSTRG.12780.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1788bp|location=Sequence derived from alignment at sc0000098_pilon:540041..543459+ (Clytia hemisphaerica_ch_hm2_pilon)
tttgatTTATCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTCCAT
GTTCTTCGCTGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTGGTG
ATAAgTTGGTCAATGGTCTTGTTTACTATGGAGTATCATTATCAGCTAAA
GATTTTACTGGAAATTTCCATCGCGATTTCATTTTGTCGAGTCTTGTAGA
ATTTCCTGCTGCTGTCATCGCTGTTTTGGCTTCAATGTATCTTGGTCGTA
AGAGAACGACACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTTG
GTGGTCGCTATTGATGAAAAGACTGAAGACAAACATTTGATCAATGTGCG
ATTAACGTTAGGCctgtttggtaaatttttcaTCACACTTgcttatgacg
tcatttatACATGGACTGTTGAGCTTTACCCTACGCAAATCAGGTGAttt
gatTTATCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTCCATGTT
CTTCGCTGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTGGTGATA
AgTTGGTCAATGGTCTTGTTTACTATGGAGTATCATTATCAGCTAAAGAT
TTTACTGGAAATTTCCATCGCGATTTCATTTTGTCGAGTCTTGTAGAATT
TCCTGCTGCTGTCATCGCTGTTTTGGCTTCAATGTATCTTGGTCGTAAGA
GAACGACACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTTGGTG
GTCGCTATTGATGAAAAGACTGAAGACAAACATTTGATCAATGTGCGATT
AACGTTAGGCctgtttggtaaatttttcaTCACACTTgcttatgacgtca
tttatACATGGACTGTTGAGCTTTACCCTACGCAAATCAGGTGAtttgat
TTATCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTCCATGTTCTT
CGCTGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTGGTGATAAgT
TGGTCAATGGTCTTGTTTACTATGGAGTATCATTATCAGCTAAAGATTTT
ACTGGAAATTTCCATCGCGATTTCATTTTGTCGAGTCTTGTAGAATTTCC
TGCTGCTGTCATCGCTGTTTTGGCTTCAATGTATCTTGGTCGTAAGAGAA
CGACACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTTGGTGGTC
GCTATTGATGAAAAGACTGAAGACAAACATTTGATCAATGTGCGATTAAC
GTTAGGCctgtttggtaaatttttcaTCACACTTgcttatgacgtcattt
atACATGGACTGTTGAGCTTTACCCTACGCAAATCAGGTGAtttgatTTA
TCATGCAAACGTGAGCATTTGATTTATGTTTCCAAGTCCATGTTCTTCGC
TGGAATGGCCGTTGGTGCTGTTGCTATGGGGTTCCTTGGTGATAAgTTGG
TCAATGGTCTTGTTTACTATGGAGTATCATTATCAGCTAAAGATTTTACT
GGAAATTTCCATCGCGATTTCATTTTGTCGAGTCTTGTAGAATTTCCTGC
TGCTGTCATCGCTGTTTTGGCTTCAATGTATCTTGGTCGTAAGAGAACGA
CACAGATCCCCATGATATTGGGTGGATTGTGTTGTGCTTTGGTGGTCGCT
ATTGATGAAAAGACTGAAGACAAACATTTGATCAATGTGCGATTAACGTT
AGGCctgtttggtaaatttttcaTCACACTTgcttatgacgtcatttatA
CATGGACTGTTGAGCTTTACCCTACGCAAATCAGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12780MSTRG.12780Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12780.3.p1MSTRG.12780.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12780.3.p1.exon1MSTRG.12780.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12780.3.p1.exon2MSTRG.12780.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12780.3.p1.exon3MSTRG.12780.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12780.3.p1.exon4MSTRG.12780.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098_pilongenomesc0000098_pilon:540041..543459 +