MSTRG.1277.1.p1 (mRNA) -

Overview
NameMSTRG.1277.1.p1
Unique NameMSTRG.1277.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:1129209..1132475+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1277.1.p1 ID=MSTRG.1277.1.p1|Name=MSTRG.1277.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3267bp|location=Sequence derived from alignment at sc0000006_pilon:1129209..1132475+ (Clytia hemisphaerica_ch_hm2_pilon)
aatttagatTCGAGTTGTTACttatttaagaaaaatatttactttaaaag
ttatcttatgGAAAAGGTGTATCAATACACCCCTACACACGTCATGGCCT
TAAAATAACCCTGACTCGTATGTTATTTCACTTAGTTTTTCAACTCTGGA
TCTTGAAGATGCAtttgatttttgtgtttttatgttTGGTAGCTTCATCC
CAAGCTTTCCTGTTCGGCAAGACACGTAAGTAGGAAAGGATTTATAAGCG
CTCTTCAAAACAACCCCTGTGTTACAGGCAGGTGTATTACGGAACTCCCT
ACTGGaaaaaaaaTGATACGATCGTAGCGCAAAGGTAGACAATGCAGCTA
CGGTGTACAAGATTGTGGATTCAATCCCCGGCCAGGTCAAACGAAAGACT
TTGTACTGAGTTTGAAATTGTACATGACGCCTCTCTGCTTAGTTTTCAGC
AAtaaaagagaaggatcaagtaAGGGTAAGTGGGACAGTCCAAGGAAAAA
GAGTATCGCCCTACTTTCGGGTAGATAACTATCAAAAGAGGAGCTTTTGG
GTCGCCTTCAACTGCGGTCGTAGACTACTGAAAGAATAGATCAAAATTAT
ACTTAGTCTATTAAATTTAGTCATAACTTTTGTCTAGGAATCTTGCTTTG
ACAAGACCTTACGTATTTCAATGGGTTATTATCGTTTTTTCTATTGATAA
ATCAGCGAGTTGACAAAGAAACGACCATACCCAGagaattcgacgttcta
ctattcgatagacTCCCTTACTCAGAGAATTCCCACtaaagacttctttc
acttttttaGCGTATCCTGATTGGGATGAGCTAAGTGGTAAgactaattt
atttatttatcttcGTTGATCTGCACCAGAAGGTACGGTTATTGACTGAA
ATACActgaaaaaaacataaaaatttacgtttatcaaaaatttgaatgaa
aaatgttGGAGTGTGCTATGATTTAAGGTGATCAATTTCcataataattt
ttcttcaatttcaacaGTGACTTTTATGAAGTATTCTGGGCTTCCCAAGA
CAGAAGAAGATGCACGAAAAGAAGGATGGACTGCTATTGGCGATGGTTGC
GTTACAGGTTTGTCATCACCATTTATCTCAATCAGTTTAATTGATATTCA
GTTTTTGGCAGCCTACTACTGGACAGAACGCACTTTAGACATCTGTATGC
TTTAAAAGACAAGAGGGTTCGGCTGGCGACACTTAAAAAAGTTAGAGCAA
TCACAATTCATCCTCCAGGCAATATCTTTGCTTTCGATAAGAAATTCTGT
TTTTGATTTTCGGTTATTACATCAGCAGGTCGCATTTGAGCTCTACAGAG
AGAATATTTGCCTTTTTGATCCTGAATACTTCCACTCATTTATATCTTGC
CAACGTGGTATTAGTAAATAGCTCGAATTAACCCCTGGAGTGACCGACCC
AACCCTTCATCACTTCAATATCTACTTTGTCACCACAGGTACCTTTTATA
AGGGTCGAAGATACGAAGGACCAGGCagtaaaaatatcaacaatCTTTTG
TATGATTTGAACGGAAATGTGGCTGGTATTCAAACAAAGGTCATTATGtt
cctaaataaaaaaacgGCTCCTACTTAGTCCTTAGACAGATTGTCCGGAA
AAACGTAATTTTTCGAGATATCCCATCAGCTAGCCATAGCTCAAAACCAC
TACATTTAGAAAAGTGACACTGAAAGTTTTACAATGATTGTAAAACTTTC
AGTATCACTTTTCTAAATGTTATGGAGTCGAAAACTTTTATGCTTAAAAG
CTATTTTAGAACCACAATTCACGTTTGAAGTTTGATATTTacaggaaaaa
attgaaaataaaatactttgTTAACATCTCAAACAAAAATTCTCAACAGG
TCATTAAGATAGAAAACCCTTTTCCAAGACGCTTTTCCTCAAAGCAATAC
AACTTTATCTTTCTCTAGTTTGAAGCTGATTTCACAGTTCCAGGATCATT
CAATAAAACCCATGTCAAGGAGGGAAACAAAATCGTACTGACCGCATATT
TTACTAACCCGAATACAATCTGTTCGAGAAATCGCACAACCACACCAGGT
TATATTGGAGATAACCTCTATCTTCCTATGGAAAACGGACCAGTGAAAAT
CCCGTTGAAAGAATCAGATCTTGTCAGTGGAGACAATAAGTGGGTCAAAG
GAAGATGCTTCTATGGAATGGGTAAGACACACTTTCTCCTGTACTAAAGT
CTATATCCTCTGTCAAGAACAACGAGactcaaaattgccaaaaataagaa
caatttaagaacaagaCTGAGTTTCCTTCAAAGAAGGTTCTTGAATAAAA
TTTCCTTGGCCTGTAGAAAATTTGTCAAGAATAAAGGAGCAATAGCCACA
ATTATTTATATCAAACAACTCAAATGTCACTACTAATGTTTCCAGGTCAG
CACTATTGGTATGACGTTACGAAGAATATGGATTGCGATGATTTCGGACC
TTGGTTTTTGTTGTACAATGGTGGAAATTTGAATGCCTTTGGATTTGCAG
GGGTTGGAAATATAGTGAATGAATACGTTGAACATCCAACCTTTGACACC
ATGCAGGTGAGAGATTATAATCTTTGCAGGATAGACCATTTGAATTTAGG
AAACTTCGACCGtcttcaagcaagaaaaagtgaagctataAGATTTGCAC
CGCCTATGACGGGTTTGATCTATCTAgtttaattttactttcaatctggc
gacagagtgaaaaccacgcgggtcacaCGTTCccgatgggaaataagtgg
cttctaTTTTCCATTCAAGAGTTTCAAATCCATCCTCTTTGGGGGCATTA
AACCCAATGGGATAGACGAGTGATAGTAAGTGCCGTGCAAAGTTTTGATG
ATTGTACACCTGCCAGGGTTGTTTTGTCACCCCGATCAATTTCTCTGTTG
TAAAAAGTAGATTCTCGGATTCTTGTTAATAAGCTTATTTAGATTCGAAC
CTGCCAATAGCAAACACTTGATCCCTCTCACAGTTCGACAATTAGGGGTT
GAAGAGTCAGATTGAACATGgtttctcattttctttttcagcatTTCTTC
CGAGAGAAACCTCTCTGTTTGAAAGAATACCCTCACTTATCTACGCAACA
TATATACCTGCAAAGGAGGCCTCATTTCAATTTCTGCTAGTGtagaaaat
tatttcattttgtaaattattatttttgataatCGTTTATAAAGAAATAC
GTGTAGAAAAATCTATA

Coding sequence (CDS) from alignment at sc0000006_pilon:1129209..1132475+

>MSTRG.1277.1.p1 ID=MSTRG.1277.1.p1|Name=MSTRG.1277.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5859bp|location=Sequence derived from alignment at sc0000006_pilon:1129209..1132475+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTATTTCACTTAGTTTTTCAACTCTGGATCTTGAAGATGCAtttgat
ttttgtgtttttatgttTGGTAGCTTCATCCCAAGCTTTCCTGTTCGGCA
AGACACCGTATCCTGATTGGGATGAGCTAAGTGTGACTTTTATGAAGTAT
TCTGGGCTTCCCAAGACAGAAGAAGATGCACGAAAAGAAGGATGGACTGC
TATTGGCGATGGTTGCGTTACAGGTACCTTTTATAAGGGTCGAAGATACG
AAGGACCAGGCagtaaaaatatcaacaatCTTTTGTATGATTTGAACGGA
AATGTGGCTGGTATTCAAACAAAGTTTGAAGCTGATTTCACAGTTCCAGG
ATCATTCAATAAAACCCATGTCAAGGAGGGAAACAAAATCGTACTGACCG
CATATTTTACTAACCCGAATACAATCTGTTCGAGAAATCGCACAACCACA
CCAGGTTATATTGGAGATAACCTCTATCTTCCTATGGAAAACGGACCAGT
GAAAATCCCGTTGAAAGAATCAGATCTTGTCAGTGGAGACAATAAGTGGG
TCAAAGGAAGATGCTTCTATGGAATGGGTCAGCACTATTGGTATGACGTT
ACGAAGAATATGGATTGCGATGATTTCGGACCTTGGTTTTTGTTGTACAA
TGGTGGAAATTTGAATGCCTTTGGATTTGCAGGGGTTGGAAATATAGTGA
ATGAATACGTTGAACATCCAACCTTTGACACCATGCAGcatTTCTTCCGA
GAGAAACCTCTCTGTTTGAAAGAATACCCTCACTTATCTACGCAACATAT
ATACCTGCAAAGGAGGCCTCATTTCAATTTCTGCTAGATGTTATTTCACT
TAGTTTTTCAACTCTGGATCTTGAAGATGCAtttgatttttgtgttttta
tgttTGGTAGCTTCATCCCAAGCTTTCCTGTTCGGCAAGACACCGTATCC
TGATTGGGATGAGCTAAGTGTGACTTTTATGAAGTATTCTGGGCTTCCCA
AGACAGAAGAAGATGCACGAAAAGAAGGATGGACTGCTATTGGCGATGGT
TGCGTTACAGGTACCTTTTATAAGGGTCGAAGATACGAAGGACCAGGCag
taaaaatatcaacaatCTTTTGTATGATTTGAACGGAAATGTGGCTGGTA
TTCAAACAAAGTTTGAAGCTGATTTCACAGTTCCAGGATCATTCAATAAA
ACCCATGTCAAGGAGGGAAACAAAATCGTACTGACCGCATATTTTACTAA
CCCGAATACAATCTGTTCGAGAAATCGCACAACCACACCAGGTTATATTG
GAGATAACCTCTATCTTCCTATGGAAAACGGACCAGTGAAAATCCCGTTG
AAAGAATCAGATCTTGTCAGTGGAGACAATAAGTGGGTCAAAGGAAGATG
CTTCTATGGAATGGGTCAGCACTATTGGTATGACGTTACGAAGAATATGG
ATTGCGATGATTTCGGACCTTGGTTTTTGTTGTACAATGGTGGAAATTTG
AATGCCTTTGGATTTGCAGGGGTTGGAAATATAGTGAATGAATACGTTGA
ACATCCAACCTTTGACACCATGCAGcatTTCTTCCGAGAGAAACCTCTCT
GTTTGAAAGAATACCCTCACTTATCTACGCAACATATATACCTGCAAAGG
AGGCCTCATTTCAATTTCTGCTAGATGTTATTTCACTTAGTTTTTCAACT
CTGGATCTTGAAGATGCAtttgatttttgtgtttttatgttTGGTAGCTT
CATCCCAAGCTTTCCTGTTCGGCAAGACACCGTATCCTGATTGGGATGAG
CTAAGTGTGACTTTTATGAAGTATTCTGGGCTTCCCAAGACAGAAGAAGA
TGCACGAAAAGAAGGATGGACTGCTATTGGCGATGGTTGCGTTACAGGTA
CCTTTTATAAGGGTCGAAGATACGAAGGACCAGGCagtaaaaatatcaac
aatCTTTTGTATGATTTGAACGGAAATGTGGCTGGTATTCAAACAAAGTT
TGAAGCTGATTTCACAGTTCCAGGATCATTCAATAAAACCCATGTCAAGG
AGGGAAACAAAATCGTACTGACCGCATATTTTACTAACCCGAATACAATC
TGTTCGAGAAATCGCACAACCACACCAGGTTATATTGGAGATAACCTCTA
TCTTCCTATGGAAAACGGACCAGTGAAAATCCCGTTGAAAGAATCAGATC
TTGTCAGTGGAGACAATAAGTGGGTCAAAGGAAGATGCTTCTATGGAATG
GGTCAGCACTATTGGTATGACGTTACGAAGAATATGGATTGCGATGATTT
CGGACCTTGGTTTTTGTTGTACAATGGTGGAAATTTGAATGCCTTTGGAT
TTGCAGGGGTTGGAAATATAGTGAATGAATACGTTGAACATCCAACCTTT
GACACCATGCAGcatTTCTTCCGAGAGAAACCTCTCTGTTTGAAAGAATA
CCCTCACTTATCTACGCAACATATATACCTGCAAAGGAGGCCTCATTTCA
ATTTCTGCTAGATGTTATTTCACTTAGTTTTTCAACTCTGGATCTTGAAG
ATGCAtttgatttttgtgtttttatgttTGGTAGCTTCATCCCAAGCTTT
CCTGTTCGGCAAGACACCGTATCCTGATTGGGATGAGCTAAGTGTGACTT
TTATGAAGTATTCTGGGCTTCCCAAGACAGAAGAAGATGCACGAAAAGAA
GGATGGACTGCTATTGGCGATGGTTGCGTTACAGGTACCTTTTATAAGGG
TCGAAGATACGAAGGACCAGGCagtaaaaatatcaacaatCTTTTGTATG
ATTTGAACGGAAATGTGGCTGGTATTCAAACAAAGTTTGAAGCTGATTTC
ACAGTTCCAGGATCATTCAATAAAACCCATGTCAAGGAGGGAAACAAAAT
CGTACTGACCGCATATTTTACTAACCCGAATACAATCTGTTCGAGAAATC
GCACAACCACACCAGGTTATATTGGAGATAACCTCTATCTTCCTATGGAA
AACGGACCAGTGAAAATCCCGTTGAAAGAATCAGATCTTGTCAGTGGAGA
CAATAAGTGGGTCAAAGGAAGATGCTTCTATGGAATGGGTCAGCACTATT
GGTATGACGTTACGAAGAATATGGATTGCGATGATTTCGGACCTTGGTTT
TTGTTGTACAATGGTGGAAATTTGAATGCCTTTGGATTTGCAGGGGTTGG
AAATATAGTGAATGAATACGTTGAACATCCAACCTTTGACACCATGCAGc
atTTCTTCCGAGAGAAACCTCTCTGTTTGAAAGAATACCCTCACTTATCT
ACGCAACATATATACCTGCAAAGGAGGCCTCATTTCAATTTCTGCTAGAT
GTTATTTCACTTAGTTTTTCAACTCTGGATCTTGAAGATGCAtttgattt
ttgtgtttttatgttTGGTAGCTTCATCCCAAGCTTTCCTGTTCGGCAAG
ACACCGTATCCTGATTGGGATGAGCTAAGTGTGACTTTTATGAAGTATTC
TGGGCTTCCCAAGACAGAAGAAGATGCACGAAAAGAAGGATGGACTGCTA
TTGGCGATGGTTGCGTTACAGGTACCTTTTATAAGGGTCGAAGATACGAA
GGACCAGGCagtaaaaatatcaacaatCTTTTGTATGATTTGAACGGAAA
TGTGGCTGGTATTCAAACAAAGTTTGAAGCTGATTTCACAGTTCCAGGAT
CATTCAATAAAACCCATGTCAAGGAGGGAAACAAAATCGTACTGACCGCA
TATTTTACTAACCCGAATACAATCTGTTCGAGAAATCGCACAACCACACC
AGGTTATATTGGAGATAACCTCTATCTTCCTATGGAAAACGGACCAGTGA
AAATCCCGTTGAAAGAATCAGATCTTGTCAGTGGAGACAATAAGTGGGTC
AAAGGAAGATGCTTCTATGGAATGGGTCAGCACTATTGGTATGACGTTAC
GAAGAATATGGATTGCGATGATTTCGGACCTTGGTTTTTGTTGTACAATG
GTGGAAATTTGAATGCCTTTGGATTTGCAGGGGTTGGAAATATAGTGAAT
GAATACGTTGAACATCCAACCTTTGACACCATGCAGcatTTCTTCCGAGA
GAAACCTCTCTGTTTGAAAGAATACCCTCACTTATCTACGCAACATATAT
ACCTGCAAAGGAGGCCTCATTTCAATTTCTGCTAGATGTTATTTCACTTA
GTTTTTCAACTCTGGATCTTGAAGATGCAtttgatttttgtgtttttatg
ttTGGTAGCTTCATCCCAAGCTTTCCTGTTCGGCAAGACACCGTATCCTG
ATTGGGATGAGCTAAGTGTGACTTTTATGAAGTATTCTGGGCTTCCCAAG
ACAGAAGAAGATGCACGAAAAGAAGGATGGACTGCTATTGGCGATGGTTG
CGTTACAGGTACCTTTTATAAGGGTCGAAGATACGAAGGACCAGGCagta
aaaatatcaacaatCTTTTGTATGATTTGAACGGAAATGTGGCTGGTATT
CAAACAAAGTTTGAAGCTGATTTCACAGTTCCAGGATCATTCAATAAAAC
CCATGTCAAGGAGGGAAACAAAATCGTACTGACCGCATATTTTACTAACC
CGAATACAATCTGTTCGAGAAATCGCACAACCACACCAGGTTATATTGGA
GATAACCTCTATCTTCCTATGGAAAACGGACCAGTGAAAATCCCGTTGAA
AGAATCAGATCTTGTCAGTGGAGACAATAAGTGGGTCAAAGGAAGATGCT
TCTATGGAATGGGTCAGCACTATTGGTATGACGTTACGAAGAATATGGAT
TGCGATGATTTCGGACCTTGGTTTTTGTTGTACAATGGTGGAAATTTGAA
TGCCTTTGGATTTGCAGGGGTTGGAAATATAGTGAATGAATACGTTGAAC
ATCCAACCTTTGACACCATGCAGcatTTCTTCCGAGAGAAACCTCTCTGT
TTGAAAGAATACCCTCACTTATCTACGCAACATATATACCTGCAAAGGAG
GCCTCATTTCAATTTCTGCTAGATGTTATTTCACTTAGTTTTTCAACTCT
GGATCTTGAAGATGCAtttgatttttgtgtttttatgttTGGTAGCTTCA
TCCCAAGCTTTCCTGTTCGGCAAGACACCGTATCCTGATTGGGATGAGCT
AAGTGTGACTTTTATGAAGTATTCTGGGCTTCCCAAGACAGAAGAAGATG
CACGAAAAGAAGGATGGACTGCTATTGGCGATGGTTGCGTTACAGGTACC
TTTTATAAGGGTCGAAGATACGAAGGACCAGGCagtaaaaatatcaacaa
tCTTTTGTATGATTTGAACGGAAATGTGGCTGGTATTCAAACAAAGTTTG
AAGCTGATTTCACAGTTCCAGGATCATTCAATAAAACCCATGTCAAGGAG
GGAAACAAAATCGTACTGACCGCATATTTTACTAACCCGAATACAATCTG
TTCGAGAAATCGCACAACCACACCAGGTTATATTGGAGATAACCTCTATC
TTCCTATGGAAAACGGACCAGTGAAAATCCCGTTGAAAGAATCAGATCTT
GTCAGTGGAGACAATAAGTGGGTCAAAGGAAGATGCTTCTATGGAATGGG
TCAGCACTATTGGTATGACGTTACGAAGAATATGGATTGCGATGATTTCG
GACCTTGGTTTTTGTTGTACAATGGTGGAAATTTGAATGCCTTTGGATTT
GCAGGGGTTGGAAATATAGTGAATGAATACGTTGAACATCCAACCTTTGA
CACCATGCAGcatTTCTTCCGAGAGAAACCTCTCTGTTTGAAAGAATACC
CTCACTTATCTACGCAACATATATACCTGCAAAGGAGGCCTCATTTCAAT
TTCTGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1277MSTRG.1277Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1277.1.p1MSTRG.1277.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1277.1.p1.exon1MSTRG.1277.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1277.1.p1.exon2MSTRG.1277.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1277.1.p1.exon3MSTRG.1277.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1277.1.p1.exon4MSTRG.1277.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1277.1.p1.exon5MSTRG.1277.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1277.1.p1.exon6MSTRG.1277.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1277.1.p1.exon7MSTRG.1277.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:1129209..1132475 +