MSTRG.12767.2.p1 (mRNA) -

Overview
NameMSTRG.12767.2.p1
Unique NameMSTRG.12767.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000098_pilon:306443..311524+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12767.2.p1 ID=MSTRG.12767.2.p1|Name=MSTRG.12767.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5082bp|location=Sequence derived from alignment at sc0000098_pilon:306443..311524+ (Clytia hemisphaerica_ch_hm2_pilon)
ATCAAGCTGTGTTCATTTTGAGAGTGAGCGTGGTGTAAAAGAATGTCGAT
CCATTAATTATAATCCCGCATTGAGCCAATGTGAAGTCTTTAAGAAAGAA
TTGACCATGGCAGTACCTGCTATTTTATTCAAAGATGAAGCGCCGTTGTT
TGAGGATGTTTCAGGATGGTTTCATTACAGCCCTAATCCAAACACAACAA
TGGTAAGAgtatacactttataagaacaaactatataagaacataaggat
tccattaccaaaatattgagaacaagtttagaacgttttaagactttgtg
gacTCTTAAACTACCGATTTCTTAGATGGATGAAAATACCCAAATatggt
aaaaagaaaaacatataaagaacatttttagacttaaaacttaaagttaa
gagcatctgaaggcttaaaaaattttggatgctgctacgaaaaaaattac
aaatagtCCAAGAGAACCATATCATGTCAGGAGATTAGACACATTAGAGA
ggaaaaattggcgtttttggCACCCTCAGAAAGGCTTTTCTCGAAATGAG
AGAAAAagaattgacgttttttggacctttagagagacttttctttttaa
ttttttcaaagcgaagtagtttgaagttttaccacccgctacctttctat
cattcagtcagTTCCGCGCAGCCTTCCTAAATCGAGTGGCACCGAAGGCG
CCTAAAAGAAAAAGgggactctaagctatccaacggactataaacgaact
tctaactccttctagatctggagatataagcctttaaagtttgaactagc
gattttctttaaaaaacttgaccgtggcacttaaagggttaaactgTTGA
ATTTTGTAGTGCTCAGCGAGTGTTTCATTTAAAAACCCTAACAAATACCC
TAATCGGTAGGAAGGAAGGAAGGGATTCATAAAAAACCGACAAACCGTAA
GGGTGtcttcccgggggggggggcactcgttCTAAAAAGTTTGACATCCT
TCTGCCTCATTCTCTTCGTCAGACCTTATCAGACCCTTTcaaaaaggtaa
tttttgaGACATACAGATGGGAGATGTACACATGCACATGTAAAGGTAAA
ACatatccttacagtgcagcacTGGTCAAAACATACCCTTACGGTGCACT
AGCTGAACCTTGaaaaaaaaCGACTCATAAGTGCCGCACGTTTGATATAT
CATTTACCTTGATTGatccctccccccccccgggtgtatTTTAGAGGGAA
TCCACTAAAAGATTCGATAACTAAAAAGATAACACTATAGTAATCTAACA
AGTTAATGTCAGAAGATGGGGATGAAAAGGTGGCAGGTGTTTGCTAGAAT
TGGAGTTGCAGTTGGAAAGGTTAGTGAGAGGGTTCTGATAAACTGCCGTT
TCCAAACCTTCGACAATTTTTTCCTTACCAAAGTTCTAAGCTCACTTTTC
CAAGGGATAGCGCTCTAACCCTACTGATGTGCCAGTTTCTGAAAAGATGT
ACCTCAAAAGTAACCAGGAAGGAGCATACGATGCTTGGTCGTACAATGAT
CCAAAGAATCTAATGACTCATTTTCCTCTACTTTTGAAAAGATGTACCTC
AAAAGTAACCAGGAAGGAGCATACGATGCTTGGTCGTACAATGATCCAAA
GAATCTAATGACTCATTTTCCTCTACTTTTGAAAAGATGTACCTCAAAAG
TAACCAGGAAGGAGCATACGATGCTTGGTCGTACAATGATCCAAAGAATC
TAATGACTCATTTTCCTCTACTTTTGAAAAGGTTGGGCCGAAATGCGCAG
CTGAAGGAAATCCATGTGGTGTTGGCAAATGTACGGATACTTGTGACAGC
TTCAAATGTGAATGCAATGTTGAACAATTGAAAGAGGACGACGTCTGCAA
ACTCAAAGATCGTAAGTTACATTTGACAGTGATTTTCATGGGAGTTTTAA
GGGTTCAAGATTTCTCAAGCATCAAATAAGAGGTAGATATTTTCATCTTT
GTAATATACAGAGGCAGAGATAAATTCTATGACATTTTCGAAACAACGGC
TTCTGACAGATTTTTTGAACTTGATGAACACACTGGATAAATACAAGGAT
GTCTAAATTAACCGtcatttataattatttttgctgggaaaataaaccaa
tcagaaCGCCGCTTTTTAACTGGCGTCACAACCCACGTTTCTGTAAACAA
TGAAACGCGGGATCTCCCGCAGAAActttggacatgccgtaactcactcG
AGCATTTGTTTCGcttcaaaataaagtcaaaGTTTGAGATAAAATGAATT
AAACAGTTAACGAGGCTAGCCATCGAGGGAGTGACCTAAAAAGACTCAAA
AATATGCAACCAATTATACATAGTCCCTTTTCAAAGTACATTGAAGTAAA
CATATGATTAATTTATTACAGCAAAAAGCTTCTGCAAATTGAACAATTTC
ATTGGAAGAGAAATGACTGTTTCCGATAACAATCAAAAGTTGAATGTCAA
AACTGCAACGGAGATTGAAGCTGTTGATGGGACAACATACACATTTGAAT
TGGACCCAACCGAAGAGGGATGCGTTTTTGTTGAATCTACTACTAGAGCA
TCTACAATTTCCTTTCTTTATAAGACATGTCAATTCTACGATTCACACAA
TTCGCTTACTTATTCACTTGACACGTGTGACTACAGTATGTATTTAACCG
ATTTAACAGGCCCTTCTGCATATCAATATTTGTCAATTTGGCagaaaagt
cttcttttttcatttacattcttcattttttcaaagtctATTTCAGCCTA
GACAGTGTCTTACTTAGTCCCATTATACCAAGAGAAATTAACTCCTGGTC
GTGAACTTTAAAGAAGATACGAAGACAGCTTAGCTATAAAGGCTCAATCA
AACATATTccttaaattttctttgttagAAGAAGCACAAAAGCTGGTTGG
GCTGTATGACCACGGAAAGATATTTGTCAGCCGTTACGGTATTCATGGCG
GCTTCCGAATCAAATCGAACAAACTTGATCATCTTCTTGACGGGACCGTT
ACTGGAATCACCACAACTGACGCAGGCGACTTTCAAATTGCAGTGAATTT
CTATAATCAATTTGAACTGACCGGATTAATCGATTGTACCATCATTCTAA
AAAGGTTTGACGATGGTGAAACAATGACCTGGAGAAAAATTGGTTGTCAA
ATACCATCAGGTAAGACATTGGAACCTAGTCTCTCCTGAAAAGGCTTGAT
TTTTATAACCATTCAACATTTTAACGTTGAAAGCCTAATTGAAAGGGACg
ttctggagtttttataagatacttcagtaattggtcatttgaagtaataa
aaatgacgcattctttagaaaaagcaataaaattgttgtattactggtta
acgaccaaccaaatcaagaaagagcttgtaaaaactccagcttgtcccaa
ttgaaaatgttaaaacGCGTGGACGCATGCGCGCTACGTAGTTTGCATAA
TAACCATGATTTGATGATTTGACTAAGTGACGGTTCTTCATGGGTTTTAG
ATTTAGTTTTATGACAGAGCGTTTTTTATCCATACTCCTTATAAAGGaaa
tggagataaaaataaatctttttgtaaCAAGTTTccaatacttttttttt
ttagttacgCCTACTCCTACGCCAAGTCTATAAGCACCTGCTCCACGCCA
AATTTATAAGCACCTGCTCCACGGCAAGTCAATAAGCACCTGCTCCACGC
CAAATTTATAAGCACCTGCTCCACGGCAAGTCAATAAGCACCTGCTCCAC
GCCAAGTCTATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGGTCC
ACGCCAAGTCAATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGCT
CCACGCCAAGTCTATAAGCACGTGCTCCACGCCAAGTCTATAAGCACCTG
CTCCACGCCAAATTTATAAGCACCTGCTCCACGCCAAGTCAATAAGCACC
TGCTCCACGCCAAGTCTATAAGCACCTGCTCCACGCCAAGTCTATAAGCA
CCTGCTCCACGCCAAGTCTATAAGCACCTGGTCCACGCCAAGTCAATAAG
CACCTGCTCCACGCCAAGTCTATAAGCACCTGCTATACGCCAAGTCTATA
AGCACCTGCTCCACGCCAAGTCTATAAGCACCTGCTCCACGCCAAGTCTA
TAAGCACCTGCTCCACGCCAAATTTATAAGCACCTGCTCCACGGCAAGTC
AATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGCTCCACGCCAAG
TCTATAAGCACCTGCTCCACGCCAAGTCAATAAGCACCTGCTCCACGCCA
AGTCAATAAGCACCTGCTCCACGTCAAGTCAATAAGCAACTGCTCCACGC
CAAGTTTATAAGCACCTGCTCCACGCCAAGTCTATAAGCACCTGCTCCAC
GCCAAGTCTATAAGCACCTGCTCTTGGCCAAGTCAATAAGCACCTGCTCC
ACGCCAAGTCAATAAGCATCTGCTCCACGCCGACTCAATAAGCACCTGGT
CCACGTCAAGTCAATAAGCAGTGCAATAAAAGCTGTGCGCTCCATGGGGA
TCATCATTGCTGTATACTGTTTTGAGCACATAGATTTTAGCAGGGTTGAC
AGTAAGATAGAATTAATCCCGCCAGTGGCTTCTTGGGAAAATTTCCTATT
CTGGGATAGAGAAATAATTGAACCAGTGCTTGCCACACAACAAAGCAGTA
TCGTGTTTCTGAAGTTACTTGATTCTCAATTAAGCTTGGGAAAATACAAT
TTATGCTGGCAAGTTCTTAACCATGCTAACAATATAAAAACTCCCAAGAT
GAACTGTTAAATGGCAGGACCGAGTTGAAGTCGTGCCCAGGCTCCTAAAT
CGTGGTTGATAACTATTGTgagattttaaacattttcgagaaatttcacc
aaaaaaactttacaaattacTTGAAAATTTACCTGTAACTATTTATTCCC
AATAGCTAATAGggtatcaatattttttataataaatctttgttttattt
taattctCCTTAAAACTATAACACGTACCGTA

Coding sequence (CDS) from alignment at sc0000098_pilon:306443..311524+

>MSTRG.12767.2.p1 ID=MSTRG.12767.2.p1|Name=MSTRG.12767.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3990bp|location=Sequence derived from alignment at sc0000098_pilon:306443..311524+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAGTACCTGCTATTTTATTCAAAGATGAAGCGCCGTTGTTTGAGGA
TGTTTCAGGATGGTTTCATTACAGCCCTAATCCAAACACAACAATGGTTG
GGCCGAAATGCGCAGCTGAAGGAAATCCATGTGGTGTTGGCAAATGTACG
GATACTTGTGACAGCTTCAAATGTGAATGCAATGTTGAACAATTGAAAGA
GGACGACGTCTGCAAACTCAAAGATCCAAAAAGCTTCTGCAAATTGAACA
ATTTCATTGGAAGAGAAATGACTGTTTCCGATAACAATCAAAAGTTGAAT
GTCAAAACTGCAACGGAGATTGAAGCTGTTGATGGGACAACATACACATT
TGAATTGGACCCAACCGAAGAGGGATGCGTTTTTGTTGAATCTACTACTA
GAGCATCTACAATTTCCTTTCTTTATAAGACATGTCAATTCTACGATTCA
CACAATTCGCTTACTTATTCACTTGACACGTGTGACTACAAAGCACAAAA
GCTGGTTGGGCTGTATGACCACGGAAAGATATTTGTCAGCCGTTACGGTA
TTCATGGCGGCTTCCGAATCAAATCGAACAAACTTGATCATCTTCTTGAC
GGGACCGTTACTGGAATCACCACAACTGACGCAGGCGACTTTCAAATTGC
AGTGAATTTCTATAATCAATTTGAACTGACCGGATTAATCGATTGTACCA
TCATTCTAAAAAGGTTTGACGATGGTGAAACAATGACCTGGAGAAAAATT
GGTTGTCAAATACCATCAGttacgCCTACTCCTACGCCAAGTCTATAAAT
GGCAGTACCTGCTATTTTATTCAAAGATGAAGCGCCGTTGTTTGAGGATG
TTTCAGGATGGTTTCATTACAGCCCTAATCCAAACACAACAATGGTTGGG
CCGAAATGCGCAGCTGAAGGAAATCCATGTGGTGTTGGCAAATGTACGGA
TACTTGTGACAGCTTCAAATGTGAATGCAATGTTGAACAATTGAAAGAGG
ACGACGTCTGCAAACTCAAAGATCCAAAAAGCTTCTGCAAATTGAACAAT
TTCATTGGAAGAGAAATGACTGTTTCCGATAACAATCAAAAGTTGAATGT
CAAAACTGCAACGGAGATTGAAGCTGTTGATGGGACAACATACACATTTG
AATTGGACCCAACCGAAGAGGGATGCGTTTTTGTTGAATCTACTACTAGA
GCATCTACAATTTCCTTTCTTTATAAGACATGTCAATTCTACGATTCACA
CAATTCGCTTACTTATTCACTTGACACGTGTGACTACAAAGCACAAAAGC
TGGTTGGGCTGTATGACCACGGAAAGATATTTGTCAGCCGTTACGGTATT
CATGGCGGCTTCCGAATCAAATCGAACAAACTTGATCATCTTCTTGACGG
GACCGTTACTGGAATCACCACAACTGACGCAGGCGACTTTCAAATTGCAG
TGAATTTCTATAATCAATTTGAACTGACCGGATTAATCGATTGTACCATC
ATTCTAAAAAGGTTTGACGATGGTGAAACAATGACCTGGAGAAAAATTGG
TTGTCAAATACCATCAGttacgCCTACTCCTACGCCAAGTCTATAAATGG
CAGTACCTGCTATTTTATTCAAAGATGAAGCGCCGTTGTTTGAGGATGTT
TCAGGATGGTTTCATTACAGCCCTAATCCAAACACAACAATGGTTGGGCC
GAAATGCGCAGCTGAAGGAAATCCATGTGGTGTTGGCAAATGTACGGATA
CTTGTGACAGCTTCAAATGTGAATGCAATGTTGAACAATTGAAAGAGGAC
GACGTCTGCAAACTCAAAGATCCAAAAAGCTTCTGCAAATTGAACAATTT
CATTGGAAGAGAAATGACTGTTTCCGATAACAATCAAAAGTTGAATGTCA
AAACTGCAACGGAGATTGAAGCTGTTGATGGGACAACATACACATTTGAA
TTGGACCCAACCGAAGAGGGATGCGTTTTTGTTGAATCTACTACTAGAGC
ATCTACAATTTCCTTTCTTTATAAGACATGTCAATTCTACGATTCACACA
ATTCGCTTACTTATTCACTTGACACGTGTGACTACAAAGCACAAAAGCTG
GTTGGGCTGTATGACCACGGAAAGATATTTGTCAGCCGTTACGGTATTCA
TGGCGGCTTCCGAATCAAATCGAACAAACTTGATCATCTTCTTGACGGGA
CCGTTACTGGAATCACCACAACTGACGCAGGCGACTTTCAAATTGCAGTG
AATTTCTATAATCAATTTGAACTGACCGGATTAATCGATTGTACCATCAT
TCTAAAAAGGTTTGACGATGGTGAAACAATGACCTGGAGAAAAATTGGTT
GTCAAATACCATCAGttacgCCTACTCCTACGCCAAGTCTATAAATGGCA
GTACCTGCTATTTTATTCAAAGATGAAGCGCCGTTGTTTGAGGATGTTTC
AGGATGGTTTCATTACAGCCCTAATCCAAACACAACAATGGTTGGGCCGA
AATGCGCAGCTGAAGGAAATCCATGTGGTGTTGGCAAATGTACGGATACT
TGTGACAGCTTCAAATGTGAATGCAATGTTGAACAATTGAAAGAGGACGA
CGTCTGCAAACTCAAAGATCCAAAAAGCTTCTGCAAATTGAACAATTTCA
TTGGAAGAGAAATGACTGTTTCCGATAACAATCAAAAGTTGAATGTCAAA
ACTGCAACGGAGATTGAAGCTGTTGATGGGACAACATACACATTTGAATT
GGACCCAACCGAAGAGGGATGCGTTTTTGTTGAATCTACTACTAGAGCAT
CTACAATTTCCTTTCTTTATAAGACATGTCAATTCTACGATTCACACAAT
TCGCTTACTTATTCACTTGACACGTGTGACTACAAAGCACAAAAGCTGGT
TGGGCTGTATGACCACGGAAAGATATTTGTCAGCCGTTACGGTATTCATG
GCGGCTTCCGAATCAAATCGAACAAACTTGATCATCTTCTTGACGGGACC
GTTACTGGAATCACCACAACTGACGCAGGCGACTTTCAAATTGCAGTGAA
TTTCTATAATCAATTTGAACTGACCGGATTAATCGATTGTACCATCATTC
TAAAAAGGTTTGACGATGGTGAAACAATGACCTGGAGAAAAATTGGTTGT
CAAATACCATCAGttacgCCTACTCCTACGCCAAGTCTATAAATGGCAGT
ACCTGCTATTTTATTCAAAGATGAAGCGCCGTTGTTTGAGGATGTTTCAG
GATGGTTTCATTACAGCCCTAATCCAAACACAACAATGGTTGGGCCGAAA
TGCGCAGCTGAAGGAAATCCATGTGGTGTTGGCAAATGTACGGATACTTG
TGACAGCTTCAAATGTGAATGCAATGTTGAACAATTGAAAGAGGACGACG
TCTGCAAACTCAAAGATCCAAAAAGCTTCTGCAAATTGAACAATTTCATT
GGAAGAGAAATGACTGTTTCCGATAACAATCAAAAGTTGAATGTCAAAAC
TGCAACGGAGATTGAAGCTGTTGATGGGACAACATACACATTTGAATTGG
ACCCAACCGAAGAGGGATGCGTTTTTGTTGAATCTACTACTAGAGCATCT
ACAATTTCCTTTCTTTATAAGACATGTCAATTCTACGATTCACACAATTC
GCTTACTTATTCACTTGACACGTGTGACTACAAAGCACAAAAGCTGGTTG
GGCTGTATGACCACGGAAAGATATTTGTCAGCCGTTACGGTATTCATGGC
GGCTTCCGAATCAAATCGAACAAACTTGATCATCTTCTTGACGGGACCGT
TACTGGAATCACCACAACTGACGCAGGCGACTTTCAAATTGCAGTGAATT
TCTATAATCAATTTGAACTGACCGGATTAATCGATTGTACCATCATTCTA
AAAAGGTTTGACGATGGTGAAACAATGACCTGGAGAAAAATTGGTTGTCA
AATACCATCAGttacgCCTACTCCTACGCCAAGTCTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12767MSTRG.12767Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12767.2.p1MSTRG.12767.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12767.2.p1.exon1MSTRG.12767.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12767.2.p1.exon2MSTRG.12767.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12767.2.p1.exon3MSTRG.12767.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12767.2.p1.exon4MSTRG.12767.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12767.2.p1.exon5MSTRG.12767.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098_pilongenomesc0000098_pilon:306443..311524 +