MSTRG.12759.3.p2 (mRNA) -

Overview
NameMSTRG.12759.3.p2
Unique NameMSTRG.12759.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000098_pilon:175059..181600+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12759.3.p2 ID=MSTRG.12759.3.p2|Name=MSTRG.12759.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6542bp|location=Sequence derived from alignment at sc0000098_pilon:175059..181600+ (Clytia hemisphaerica_ch_hm2_pilon)
taaaaattatttatttatagatataataaaattgataaagctTAAAAAGC
AACAGGCCTAACAATGGCTGCTTTTGTTCCAAAAAATGGAATGCGTGTTG
AAGTTATTGGAAAAGGGCTGATAGGTAAGCTAGCAAATATTATCTTTATT
GTCAAGAATCACCTctcctattttgaaaaaatgatctTAGTTATGTTTAC
CATGGTGAAGATTTCAAACAGTTCTTTTGTACTGTTTTTAACAGCCAAAT
TACCCAATTCTGAAATTGCgttttgaaactcaatatttagagaaatttca
atttcttagtCTAAGAAATGAGCATTATGCATTTGCTTTCAGAGAAATTA
TTTGCCTTATTCATCTGGCTTTATTCATCAATATGTTAAAcagttatttt
cttttcaaagggAAAGTGTCAGTTGTTTGCTAATTTTATGCTGatgcttt
ttagaaaattttttacctCCACCAAAACTTTGTTCTAATTAGGGAAATGG
GCAAAAATTTCACCTGTTTGCCCATACATCACCAAAGGCTAAGAATGTTT
TCAACCTCTTTCTCTTAGGTACTGTCAGTTATGTTGGTATGACTGCATTT
GCTGCTGGCAAGTGGATTGGTGTCGCTTTAGATGAAGCTAAAGGAAAGAA
TGATGGAAGTGGTAAAGATCTAATTGCTAACCCTAACTGCTTCAAATAAT
ATAGATTTGGAAGTAACTTAAGTTTTCTTAGCCAGTGGTTTATGTTAAGA
AAGTCTTGAGAGTTTAGTGAGCATCCAAGTGTAAAGCTATTATAACCTTG
AGCTACATAATTTTAACTCCATTGCTTGCTTGGATGGTATATGCACATGA
TATAGATGtatttctaattttaaatttttaagatcGTTAGTTGAAAACCT
GTTGTATAATGTGACCAATTTATAAAGTACCCTAATCTTGCATTAAATTT
CATTCTCTAGTCCAAGGAAAGAAGTATTTTGAGTGTCCACCAAACCATGG
AATCTTCGTGCGCCAAACACAAATCACAGAACTGGTTGACGATCCAAAGG
TAGAAGAAGCCATCAAATCTCCTCGGTCTAGTATGATTCCACCCTCCACT
GGTGCCTCCCGTATAAGTGGTTTGCGCAAACCAGGATCTAGTAGTGGTAT
ACCACCTAAAGGGGCTTCATCTCCTTTACCATCAAAACTTGCAGCACCAG
CCTCTTCAAATCCCAAGCCAGGGAATGAGTCTGGAATGAAGCCCCCTGGC
TCCTCTCTGAGGCAACCATCAGGGCTTAAGGCACCTTCAGTGTCAAGCCC
ACCACCTCCAGCACCATCATATAACCAAGCACTAAAACAACCATCTACTA
ATCCATCACCTTCCTTAAAGCAACCAGGTCTTCGAAAACCATCTCCCACA
AGCCCACCTCCATCTAAACCTGCATCGTCCCTTAAAAAGCCATCCACTTC
TAGCCCAACACCACTTAAAACAGAAAGTTTAAAGCAACCCTCTGTTGTGA
AAAGTGAACTAAAGGTAAGTAGTGTGCATAACAAAGGTTTGTATGTATTC
GCTCTTTTGTCCTGTCATTGTAAAGCGTTTGTCATGCTaaaagtgtaaag
aaatttgaatgtttttaaacaatttaaaccatacatacagtggagtctct
ataactcgaactgGACAGGGAACACAAGTTTGTTTGAGTTTAAGAGACTT
tccagttatagaggttcgagataAAGGGACTCTACTATAGTAATAgtact
aaaaataaaagtaatattcatgatgatttttttatcaaactacTTCTTAA
ATTTTAGGTTGTTCCTTAAGAGCCACATTCTCTAAGAACCAGGTGGTTTT
GGACAATTTTGttagtatgaaattttgtttgccttcatttttggatattt
ggtagacaatagtgaaaaactcagaatcccaaaattttgggtcccaaaaa
tccataatggatTGCTTGAGGGCAAgttgaaattttggactttttttgcc
CAGTGTAAAAGtctgattttgagagaaaaaaatttttggcttaatttttc
tcaaatctgcTCATAGATCACATGGGTATTATTTTTGTTCCTGAGGAACA
ATTAACAGTTTTTCCCAACATTAGTCGCAACtcttgaataatcgaggcaa
atATCGCACTTTTTGTGATTTGCACCTTCTTGTAGAGCCTGTAGAGCCCA
GCCAGGTTGAGTGaaatacttcaaattttcaacatttgatctTTGTTAGT
TGGTGAacactttttgccaaaaataaaattcctagAATGCTCCAAGGCTG
AATAATTGAGgtttaaatttgttaaaaagtgagttttttcCATATCTagg
ccgccattatgaaaaatgcgattaaggtcacatgggtttttttggatttt
ttgacactttattGTGAGtacttttagaaaatcaaaagaaacccatgtga
ccttagttgcaacttgaaatatttcctcTCAAAGTCAGACTTTTACACTT
ggcaaaaaaagtccaaaatttcaacttgccctcaagccgccattatggat
ttttgggacccaaaattttgggattctgagtttttcactattgtctacca
aatatccaaaaatgaaggcaaacaaaatttcatactaaCACCACCCACCT
GGTTCTTAGATAATGTGGCTCTTAAAAGCTCAAAGTAGATCCAAGTAAAA
ACTCATTACTGAAATATATCCGttttctttatttgaaaatattattttat
caataaatctttgttttttgttgtaatattttgtatatataCGTAAACAC
CCATACATCATACACATATACAAGGCTTTTTCGTTTATAAGTTTATGTTA
AACCCACGGTTATGCACACTGCTTCctttaaaagctttttattttGTAAC
AAACTTTCCAACACATAAACACACTGACACatcttttgtttataatttaC
TCTATACAATCCTGTTTCTGATATTCCAGGCACTtatttatcttcatttt
tatgttCCCATTTTAGACTGAACCTGTTTCTCCGCCTCCGTCTAGTAAGG
GTATCAAACCTCCAAATGGATCAGGTCTTAAGGCACCTGGATCAGGAATT
AAAGCACCAGGGGGTTCTGGTATGAAGCCTCCAGGTGGTTCAAAGGTCAG
TTCACCCTCTCCACCACCTCAATCGCCTTCCCCTAGAGGTATCCCTGCCC
GTGGAGGAACGATCAGCCCACCAACATCTGGCCTAGCTAAACCAAAAGGT
GGACTTCAAAAACCTGGAAGTGGTCTCAAGGCACCAGCCACGCCATCATC
GAAAACTGGTGTACAGAAACCGTCAGGACTTCAAAAGCCTGGACTCAAAG
GACCTGCAACTCCTGCTGTTAAATCAGAACAGAAAATTAAAGAAGAGCCT
GTAGACCAAGTTGAAGAACCACCCAAGGTCATTGAAAAAGAACCTGAAAA
AGCTGAACCACCAGCACTAGTTAAACCTGAGGTCAAAGAAGAGCCAGCAG
AACCAGAGCCTCAAGTTCCTGCTGTACCACCTGCGCACAAAGTAGTGGCT
GCATCAGAAGAACTTCTAGATCTTCAACGCAAACTGATGgagaaagaaaa
atcagttGTTGATTTAGAGGAGAAGCTAAACGTATTGAAGCAAAAGAGAA
TCGCTGATTTAGGGAAATTAAAGGAAGTGGATAAACTGAAACTTCAAAAT
GAGCAGGTATAGCTTATTTGATGTCATGTTTCTATCTTTTGCGTTATTGT
TCTCAAGTCAGAATGTTTCCATAACTTCCAAATGTTTTTGCTAATTTCAG
CTTTTATTGTTACTTAAAAAGAgtgaaaagtctttttttctcATAGCCAC
CAGTTTTTCTTGATTGGATGGATGTACATTTTGGTTTTGATGCTATAATG
TAGGACTTAATAAATAGTGCAACGAAATGTTGGACTACTGCTATGATTTT
CTGTTATGTTTTAATGGgggtttttaatttcaaaagtgtttttatgTCTA
CTTTATATATGAGAGTATGTGTTCGTtctgattttcaaaactttttgatt
ttactttttctttttagttcaTGGAATATAAAACCAAGTATCAAGAATCA
ATGAGAGATTTGCAAAATCAGCTTCGTCAAGCTCAAAATGTAAGACCCGT
TTTCTCTCTCATTCAAAGTTCAGACAAAATCTAGTAATGTTTTACAGATA
ATTTCTACTTCATTTTCTACCATGAAATATTGTACAAGAGGAATATGAGA
GAATGCTATGTCGAATTTTTAGCTATGAAATGCTGTCcgggaattttgtg
aacacaTTGGTAAAATGGGCTAGGTCCTTAAAATCGTGACATCTGAAATA
TTAGAATTGCTTGGTTTAGTTATAACAAAACATCTTTTATGCCATATCAT
ATCACATAAGTAACCACGTTTTGTTTTCTCCACAACACAGGAAGCGCGAG
AAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCACCGAACTTCAAGAA
GCTGTTGAAATGGCCACCCTTGACAAGGAAATGGCCGAAGAAAAAGTACG
TTTTCGTTTATGAGATGTTGAATTTTGACCacttttgttgtatttttttt
gtcaatctgTTTCAAAAAGTGATATACACTTAGTAGCTTGATTGAGTTTT
TATAGATTAAACTTACTCACCTAATTTGATTTGGAATCTTTTTACTTTTG
GTCGATAGTTTGAAAGTTTGACTCAAGAACACGATGTTTTGAAAGACAAA
TTTGAAGAGACTTCCTTGGAACTTGAAATCCTCAAGAATGAAATCAGCGA
AGGAGGTAGGTACAGAAATAAGGGTCCCCCTGTAGGTCAGCGTTGTGACA
CCATTCACTTTTGCatataatttttcattgaattttgtttaaatttggGC
AAAATTAGTCTTGAATATAGCCAGCTTTAAAGAAAACcgtttgccaaaat
taaaacgttcgaactgaaaaatttcgaaacggcaaaacaaatttaacaca
aaatATTACTTACTTTACCATGTTTACCAAGGTTCAGAAGCCGACAAGTC
ATAGAACGTTCAATTCAAATGCTCTAATTTTATTCAAGGAGTGGAAAGTG
TACAAGCCAATGCTCAAACGAAACAGATGGAACAGCAAAACATTCGATTG
AAAGAAGCCCTTCTCAAGTATGTACTCATAACTTTTGCATACAATTTCAT
CTTCTCCCGTGAGCCTATAAACAAATCTTTCTCACTTCGCTGAAATCGAC
TTTACTTGCTATCAAGCTTCATTGATTTTCCAAAACCTTCGATTAAAATA
AGTTTACTTTAAGGTTatacatttttctattttcatctgcgaatctcaaa
ttttcagtttacTTAAACTCTGGGCATCCAACCTCACCAAGGCCTTGCCA
TTTCAGGTCATTCATATATTTTGCTGGTTTTAGCTTTTTTCTTGTATCTT
GATCAGAGCCCCGGGGAATGGGGGTACTAGGGGTGCGAGCTGGCAGGGGG
TGCCGCCcaacttttgattttgactcCTCTGATTTGATATTGTTTACACT
GGTTGTGCTAAATGGATAAATTTTCCTAATATGCACCttgattcaaaagt
ttttttaggtTAACTACTAAATGcaatttcaagaattatttttaacTCGT
TAGACTGAAAGACATAGCGCAAAATGACAAAGCCGAATTAGCCAGTGTGa
ccaaacaaaacaaagagttgAGTCAGCAAGTCTCCACTATTGGTGGTGAG
CGAGATAAACTTCAAGAACGTTTGCAAGAAGCCATTGAACAGGTCGATGA
TCTGAAAGAACAGGTTCGAAACACTTTTCACAACCTACCCATCCCTTCTG
AAGAACGTTTGAGAATATTAAAGTTTAAAATTCCTTAAAGCAGGCTGAAA
TAATCAAATGTTTTTGTAACATAATTTACTCATTCCGTAATTGTTGCTAC
ATTAATAAACGgccatcaaaatttttatatggTATGCCACTAATTTAAGA
TAAGACGGTTAAGGGACGAATTCTTTCTTGGCTGTAAAAAGAAATTCACC
AAATCAATAATCAATTGGTCTAGAAGTTCCTGTTTTGTTCATTAAAGACT
TTAAGCACATAATCTTTGGACAGATAATTTGCTCTACTGATCTTTTCTAA
CATTATCAAAGATTTCATAACTTTCTTATAGGTTGATATGGCTTTGGGAG
CTGAAGAAATGGTGGAAAAATTAACCGATAAAAATTTGGAccttgaagaa
aaaattgaacagtTGGAGGAATCTGTTCAAGATTTGGTAAGAGCAAATTA
CACATCTCGTAAAAACTTATTTTAGGGCCTGTACATCATTTTCAAGGATC
CATTAAATTGATAGACAAGTCTTGCCTGGGGGACAATATCGAGTTTATTG
TCTCTAAAATTAACATTCTcctttatcattcaaactgcaGGAAGCTTTAC
GTGAGCTGAACATCGAGTTGGAAGAAAGTCACGTTCAAACGGAACATGAT
CTTCGCGAAGAACTTGATATGGCCGACAGCAAGATCAGGGAG

Coding sequence (CDS) from alignment at sc0000098_pilon:175059..181600+

>MSTRG.12759.3.p2 ID=MSTRG.12759.3.p2|Name=MSTRG.12759.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1632bp|location=Sequence derived from alignment at sc0000098_pilon:175059..181600+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAACAGCAAAACATTCGATTGAAAGAAGCCCTTCTCAAACTGAAAGA
CATAGCGCAAAATGACAAAGCCGAATTAGCCAGTGTGaccaaacaaaaca
aagagttgAGTCAGCAAGTCTCCACTATTGGTGGTGAGCGAGATAAACTT
CAAGAACGTTTGCAAGAAGCCATTGAACAGGTCGATGATCTGAAAGAACA
GGTTGATATGGCTTTGGGAGCTGAAGAAATGGTGGAAAAATTAACCGATA
AAAATTTGGAccttgaagaaaaaattgaacagtTGGAGGAATCTGTTCAA
GATTTGGAAGCTTTACGTGAGCTGAACATCGAGTTGGAAGAAAGTCACGT
TCAAACGGAACATGATCTTCGCGAAGAACTTGATATGGCCGACAGCAAGA
TCAGGGAGATGGAACAGCAAAACATTCGATTGAAAGAAGCCCTTCTCAAA
CTGAAAGACATAGCGCAAAATGACAAAGCCGAATTAGCCAGTGTGaccaa
acaaaacaaagagttgAGTCAGCAAGTCTCCACTATTGGTGGTGAGCGAG
ATAAACTTCAAGAACGTTTGCAAGAAGCCATTGAACAGGTCGATGATCTG
AAAGAACAGGTTGATATGGCTTTGGGAGCTGAAGAAATGGTGGAAAAATT
AACCGATAAAAATTTGGAccttgaagaaaaaattgaacagtTGGAGGAAT
CTGTTCAAGATTTGGAAGCTTTACGTGAGCTGAACATCGAGTTGGAAGAA
AGTCACGTTCAAACGGAACATGATCTTCGCGAAGAACTTGATATGGCCGA
CAGCAAGATCAGGGAGATGGAACAGCAAAACATTCGATTGAAAGAAGCCC
TTCTCAAACTGAAAGACATAGCGCAAAATGACAAAGCCGAATTAGCCAGT
GTGaccaaacaaaacaaagagttgAGTCAGCAAGTCTCCACTATTGGTGG
TGAGCGAGATAAACTTCAAGAACGTTTGCAAGAAGCCATTGAACAGGTCG
ATGATCTGAAAGAACAGGTTGATATGGCTTTGGGAGCTGAAGAAATGGTG
GAAAAATTAACCGATAAAAATTTGGAccttgaagaaaaaattgaacagtT
GGAGGAATCTGTTCAAGATTTGGAAGCTTTACGTGAGCTGAACATCGAGT
TGGAAGAAAGTCACGTTCAAACGGAACATGATCTTCGCGAAGAACTTGAT
ATGGCCGACAGCAAGATCAGGGAGATGGAACAGCAAAACATTCGATTGAA
AGAAGCCCTTCTCAAACTGAAAGACATAGCGCAAAATGACAAAGCCGAAT
TAGCCAGTGTGaccaaacaaaacaaagagttgAGTCAGCAAGTCTCCACT
ATTGGTGGTGAGCGAGATAAACTTCAAGAACGTTTGCAAGAAGCCATTGA
ACAGGTCGATGATCTGAAAGAACAGGTTGATATGGCTTTGGGAGCTGAAG
AAATGGTGGAAAAATTAACCGATAAAAATTTGGAccttgaagaaaaaatt
gaacagtTGGAGGAATCTGTTCAAGATTTGGAAGCTTTACGTGAGCTGAA
CATCGAGTTGGAAGAAAGTCACGTTCAAACGGAACATGATCTTCGCGAAG
AACTTGATATGGCCGACAGCAAGATCAGGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12759MSTRG.12759Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12759.3.p2.exon1MSTRG.12759.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon2MSTRG.12759.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon3MSTRG.12759.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon4MSTRG.12759.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon5MSTRG.12759.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon6MSTRG.12759.3.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon7MSTRG.12759.3.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon8MSTRG.12759.3.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon9MSTRG.12759.3.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12759.3.p2.exon10MSTRG.12759.3.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12759.3.p2MSTRG.12759.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098_pilongenomesc0000098_pilon:175059..181600 +