MSTRG.12738.1.p1 (mRNA) -

Overview
NameMSTRG.12738.1.p1
Unique NameMSTRG.12738.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000097_pilon:958120..960265+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12738.1.p1 ID=MSTRG.12738.1.p1|Name=MSTRG.12738.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2146bp|location=Sequence derived from alignment at sc0000097_pilon:958120..960265+ (Clytia hemisphaerica_ch_hm2_pilon)
TTAGAAAGTAAGGTACCAAAAATCTCTTTCGTGTAGAAGCAAATCAGTAG
CTGAACTTCGCATACATTGTCACCAACAATATGAAGTTTTTCGTCTTATT
CATCGCAATTTTAATCCATCTACACCAGTGTCTTGGTGATGATGCTGATT
TTACCAGTCAGAACTTTAGAATGGTTCTTAATTACATGAAGGATCTTGAT
AACAGTAAACCTCTTTATGTGGACTATGTGAAAACGTTTAAAACACATCA
ACACTCTATTGGATATGTTGGCTATGATTCTAAACACAAGAATATCGTTG
TCGCTTTCGCTggtaagatttttctttttgattccTTGCGAGATTACGGG
TATGTCCGAGTCAAAGTTTGAAATTcgatccttagagagactgaatttca
aaagttttgtccatttttgacgtttttgccaaGCTTAGAGAGACTGTTCC
CCAAAATTTAAggcaaaactttcaaattttagttCAAACTTCAAGAATTT
GTCAATAgtcgatttttcattttcgtgattttggagcccttgtatctatt
caatttgatttttaatggtttttgtaccctttTGAGGGAATTTCatgggt
gtgaaaaagggacccttatggcccgcacatacccggaACCTATTTGTCTC
CCCTCCTCGGGATTCCTTCTCTTGATTGAGCAACAGCACCTAAATATCAA
CGATACCACAGATCACCTCCCGTTTTTCCTAGCGTAGTAGAGAGTTCCAT
AGATAACGGGCCTGGTAATGACAGCTATGAGTTTGACTTTCAAAAGCATA
GTGGATTTCCAAATTTAATGGGCTGTTGATCTAACCAGATTGGACAACGC
CATAGAGCATAGAGGCAGGGTAAAGATTTTTCACCGATGGGCAACAGTAA
ATGTTCGTATGTACGATTAGACTAATACTTTCTAAAATAGTGTATAGTGT
AtctaatatttttcaaagtttaagaTTTTAAATAGGTTAGAAGAGTTCAA
TATCTATAACAAGAGTGGAAACCTTAATCTCTGAAGAGATTGAATTCCGC
GCTAACACTCATTCTCTGTAATGACCATGGCTTGGTAAGAGAATCTGCCA
AGGTTGGCTACCCGCTTTTTCACCCAGATTTAGGATGAATGTCAGACGAG
CGCttggctaaagcaaaaaaaacacaCCAAAAAAGGTCAATCATAAACAA
GTCTGAATGGCATAAAATCGCAGGTATTATAAGGAGCACGAACCTTTACG
TGGAGACAGCAGCCTAATCATAACATAAACAGAAGACCCTAGTCGTATCG
CTTTCGTCTCTAGGCAAAATGCATCGCGGATTTAGATGTTTTGGTTGGCC
AGGTCACATTTGCCACAACCCTTTAGAGCAGAGTATGATGTGCGCAGAAT
CATTTACCTGTGTGAGTCTGGGGAATCTTTGGCGCATTTCAGGCCTTGTT
CGCCACAGGGGAGATAATCTATCatgaaaaaatcattcattttttttctc
gtttctCAGGTTCCCAAACATTACTCAACTGGCTAAACAATCTCAATTTG
CAATTGGTTCCATACTCTGTGTGTAGCAAATGCCAAGTTCATCCAGGCTT
TATGAGAACATACACATCCGCAAAGAAAATGATCTTCGAGCAAGTCAAAA
TGCTGGATGCAAAATATCCAGGATCTAAGATCTACGTCACTGGCTACTCA
CTAGGCGCTGCTCAAGCCGTCTACTGTGCTTTGGAACTCAACCTAGCTGG
CTATGACACTGATCTTTTAACCTTTGCATCACCTCGGCCTGGAAATAAAG
CGTTTGCTGACTTCGTTAACAAGAACTTAGGACGGAACAATTATCGGGTG
ACTTATGCTGCTGATACCATAAACGTCATTCCTGGGAAACCATATGGATA
TTACCACGTCGGAACTGAAGTCAACTTCAAAAGATGGGGAGGTTACCAGG
TCGTTCTTCCACGTTTCTCAGACAAGTATCATCCTCGCCCTTACAATATA
TTTGATCATTTTCCGAGCAATTATAAACAATTAAGAACAGAATAATGGTT
TTGTATTGTTGCAATCTCTAAGAAATTTCAAACAGAAAAAATCTCAGATT
CGTTGAAAAATGTATCGTTGGTTGATTATACCCTTTCTCAGTTCGG

Coding sequence (CDS) from alignment at sc0000097_pilon:958120..960265+

>MSTRG.12738.1.p1 ID=MSTRG.12738.1.p1|Name=MSTRG.12738.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1536bp|location=Sequence derived from alignment at sc0000097_pilon:958120..960265+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGTTTTTCGTCTTATTCATCGCAATTTTAATCCATCTACACCAGTG
TCTTGGTGATGATGCTGATTTTACCAGTCAGAACTTTAGAATGGTTCTTA
ATTACATGAAGGATCTTGATAACAGTAAACCTCTTTATGTGGACTATGTG
AAAACGTTTAAAACACATCAACACTCTATTGGATATGTTGGCTATGATTC
TAAACACAAGAATATCGTTGTCGCTTTCGCTgGTTCCCAAACATTACTCA
ACTGGCTAAACAATCTCAATTTGCAATTGGTTCCATACTCTGTGTGTAGC
AAATGCCAAGTTCATCCAGGCTTTATGAGAACATACACATCCGCAAAGAA
AATGATCTTCGAGCAAGTCAAAATGCTGGATGCAAAATATCCAGGATCTA
AGATCTACGTCACTGGCTACTCACTAGGCGCTGCTCAAGCCGTCTACTGT
GCTTTGGAACTCAACCTAGCTGGCTATGACACTGATCTTTTAACCTTTGC
ATCACCTCGGCCTGGAAATAAAGCGTTTGCTGACTTCGTTAACAAGAACT
TAGGACGGAACAATTATCGGGTGACTTATGCTGCTGATACCATAAACGTC
ATTCCTGGGAAACCATATGGATATTACCACGTCGGAACTGAAGTCAACTT
CAAAAGATGGGGAGGTTACCAGGTCGTTCTTCCACGTTTCTCAGACAAGT
ATCATCCTCGCCCTTACAATATATTTGATCATTTTCCGAGCAATTATAAA
CAATTAAGAACAGAATAAATGAAGTTTTTCGTCTTATTCATCGCAATTTT
AATCCATCTACACCAGTGTCTTGGTGATGATGCTGATTTTACCAGTCAGA
ACTTTAGAATGGTTCTTAATTACATGAAGGATCTTGATAACAGTAAACCT
CTTTATGTGGACTATGTGAAAACGTTTAAAACACATCAACACTCTATTGG
ATATGTTGGCTATGATTCTAAACACAAGAATATCGTTGTCGCTTTCGCTg
GTTCCCAAACATTACTCAACTGGCTAAACAATCTCAATTTGCAATTGGTT
CCATACTCTGTGTGTAGCAAATGCCAAGTTCATCCAGGCTTTATGAGAAC
ATACACATCCGCAAAGAAAATGATCTTCGAGCAAGTCAAAATGCTGGATG
CAAAATATCCAGGATCTAAGATCTACGTCACTGGCTACTCACTAGGCGCT
GCTCAAGCCGTCTACTGTGCTTTGGAACTCAACCTAGCTGGCTATGACAC
TGATCTTTTAACCTTTGCATCACCTCGGCCTGGAAATAAAGCGTTTGCTG
ACTTCGTTAACAAGAACTTAGGACGGAACAATTATCGGGTGACTTATGCT
GCTGATACCATAAACGTCATTCCTGGGAAACCATATGGATATTACCACGT
CGGAACTGAAGTCAACTTCAAAAGATGGGGAGGTTACCAGGTCGTTCTTC
CACGTTTCTCAGACAAGTATCATCCTCGCCCTTACAATATATTTGATCAT
TTTCCGAGCAATTATAAACAATTAAGAACAGAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12738MSTRG.12738Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12738.1.p1.exon1MSTRG.12738.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12738.1.p1.exon2MSTRG.12738.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12738.1.p1MSTRG.12738.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097_pilongenomesc0000097_pilon:958120..960265 +