MSTRG.12715.1.p1 (mRNA) -

Overview
NameMSTRG.12715.1.p1
Unique NameMSTRG.12715.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000097_pilon:572695..580061+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12715.1.p1 ID=MSTRG.12715.1.p1|Name=MSTRG.12715.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7367bp|location=Sequence derived from alignment at sc0000097_pilon:572695..580061+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGACAACGTGCTTGCTTCTGTTGTGTTCCAAATCGAAAGTTGTCAGAGC
TTCACTTCACGCCATCCTTCTTTGCCAAATTGCTAAAGTGTACCTTTCGA
CCTTTGCTAAAACATTCAAAGCTTTAATTGTCTTatataataaatttaaa
aattgttcaACTTAATATGGCACAGATTAATGGAGAGAGAGTTGAAAAAG
AGCTTGATTTCGATAAAATTGACATAAATTCCAAACGCAAAGAATATTTA
AGTTGGGAAGACTATTTTATGGCAACAGCTTTTCTAGCAGCTCAAAGAAG
TAAGGATCCTTCATCACAAGTGGGTGCTTGCATTGTAAATGACGAAAAGA
GAATTGTTGGGGTAGGCTACAATGGGATGCCAACTGGGTGTGATGATGAA
GAACTGTCATGGTCAAGAGTTGGAGAAACATATTTGGATACAAAATATGC
TTATGGTAAACacacaaaaagatttttagaataattctatattcttttaa
aaatagaaataattgTAATAGTGAATAGATTCGCATCACTTTTGAAAACA
GTTCTGTAGCcaagtttcaaaataattatcTTAATTTGGGTCTTAGTCCA
TCCTGATATATATCCAAGGCAAGTCTGCTGGTGACAACTTTTAGTTTTTC
CTGGTTATTGTCAGTTTGTCTGCCAGGGCTGGTTTCTTTTGCTCATAATT
ATTTAGCAATTTCAAAGTCGAACGATCGTAACCATTTTCGACAAAGTTAT
CCATCAGGAATTGAATCTCTTCTTCTCAAAACTGTTCGTCACAGTATCTT
GTGAGCATGGTTGTGAAACCGGTAAATACCGTAGAATCGTCATAGTGGGc
agcacccctccaacccccacctgaataaagtcacccccacctgcataggg
taacccccacctgaaaaatgctaccgacccaacccccaccttcttggacc
acccccacctaaattctgaaaagtttccaacccccacctgaaaaaggttt
ttgactgttttaacaattttgagggtaagcaaggttaatcacttgaaaat
aatttctatgctttttatacttcatacatcttttgttataattattagac
tttggaagaaatagatttttactgtcaatgtatatgtttatgatgagcag
ggttgaaagaaagtttttgagtcaaaataagaaaactagtaaataaactc
tccaacccccacctgaaaaaagtcacccccacctgtatagggtaaccccc
acctAAGATTTGTGAGCAGGCTAACCCCCACctgcttaaatttttctgaa
aacctccaacccccccctaAAGTTAgggggggTTCCCACTATgatcgtct
aatatcgacatgcgtcttctatAGTCGACACcagatctgtaaaataatca
aaacaaaccttgaatgaaattcttggtatcattcttatcaaacaagttca
tccatcaaactagaagttcaataaacgttgcaatcctttcaattaaaaaa
aaacagccaaattataagcagttttacacagcacacaaaacgcatgcaaa
cttccccgtaactttctcgtgtccatcattacaatattacaactttatta
cgcttcaagtcacgtgataaaaataattcgcgcgcttagcctggtttccc
cttccttcgTTCCGTTgaatgaaagcatgctaattattttttagtgacta
catcgttaaagttttctttttgaaaaaaacccacttcacgtttcttacat
ttcaacaatctgtgacgtgatagggagagtacaatttagtgattgattga
taactttggtatgtatttgtttatgtttgattttttatttcgaggaccag
cctacagctatgtcaaAATAACAAGACAcatgtcgatattaaacgactct
acggtatacCTTTCAACACCTTTAGCTTCTTTGCatttataccgtcaact
gctctaacttgggacgattggtcgaaacatgggactgtttgatatctggc
ctgtattttcacttactgttaaatttttttgacaaatttgttttgatcag
TTCATCATAGAGTgtcatataaacaaaactcaacatctTTGAAAAAGTTG
TCCTTTTGATTTCCCATCGTTTTGCAACTAATTTGTTCTTTGTTCCAGAC
ACTCCCGTATGTTTCACtaccaatttttttcatatttcaatttaaaagcc
taccctgtgcaaaagagaaattgtgtattttttgatacgccgttcattaa
ctcgaATCAAATTACTATGGAGGtccggtgaaatggtggccgaattaccg
tcccatgttttgtcagatagtcccaagttagagcagttgacggtaactaa
cgaccttttttttaaatgttgtcATTTTATACTGAATCCTGATAGATACA
AGTAAAAGGTAAGTtgaaatcactgattgaaaaaggttATCTCCTCTCTG
ACTGCTAATTAGCGACTTACGACTCCAACCTTCTTCCCAGCTCTAAAGTA
CCGTAATTTTGTGTAAAGCCTACCATGAGATACAATTTGAAATGAGATCC
Gtagttaatttgttttgaaattttgcagctttgattggtcagtcatttga
gggctatgtaagtttccctccactcatgcaagttacccgacttcacggta
catACCTTGGTTGATTCTTTCATAGCAACTATCTTGTCTGCTAAGTAGTC
AGAGTGATTTTCTTAAACACCTTTCTCAgacagttttatttataaacacT
TGAATAATCAGATAGTATGGtggacaggagacccgtcctgtatttttata
atctgataatatacaggacgggtatgacctgtgaggcagatttctgcctc
aaaaaatttacagtgggaaattcgaatttagcgctgtcctcacttactaa
agtAAAAAGCAAATTTCGAAACTTGCGTTTTTTCttagaaagtgtgacca
gtgaaagaataacagaattttattggctatgttttcacccatcttGGGAA
ATTCAACccaaaccatgctatatattttgccatcagtatataaGATCAGA
AATCATAGcgtggatctccaggctaataGTATGGTGGAAATAGACAAGGT
ATGTCAGCATTACACAAAGTAATGGTAGGGTGTCGAAATTGAATTAGAGA
TGTTGACATTAAACCAACTTACAGTATTGTTAGAAACTTCAGCatcgaaa
aaaagttaaaagaaataTTACCTAGTAGAATGCAAATAAAAATTACTCCA
GCATACCTTACATATGACCCAAGGTATGGCCTGAACATTATTGGGCCACT
CATCGAATTTGGACTTTAAAAAGTTCTGAACATGACCTGAACTGGCCCGA
ACACATGTTTGGACATTTTGGGCCAGGCCCTCAAAGGTGAAAATCCTAAA
TTTTGTGGCATGAACATTAATGTTTAGatcaaaagaatgttttgcCATTT
TGACCTAAACAAACAACTatgtttttaatcaaatgtCAACTTGCTCCATG
AGGTTCTACCCCTTAAcataaatgttttttgtttttttcgaagCTTTTGG
AAGATCCTTATTGGAACAATAAAATAACTTTgtgatttaaaaataaatac
tctCAAAACATTTAATGACTTTTCAATAATTAGTTATTGCCAAATCAAAT
TAATTATCAAATTAGATTCTTAAGGGGCATTGATTACTAATAAGTAAGAC
CAGAATTTGGGCATGACTTTGGGTAATATACCAACAATGTCTAATACTAC
CGACAAACTGACGGGCTAGCGATGGGTAGTCCCCCAGCTCCTTATTTGGC
AAATGGTTGGCTCAGTCAATTTGATGGAAAAATCAAAGGAGAAGCGCAAA
TCTTTGGAAGGTATATGGATGATATATTAcgtaatatcaaaacaaaccag
atcgaaaacaaactaaatgaaataaatgaatTCCATCCAAATCTAAAATT
TACTTGCGAACGCGAGGATAAAGATAGTATTCCATTTTTAGACATGAGGA
TCATACATTCTGGAAATGAATTAACATCGACATGGTACACGAAAAATACT
GATACTGGTTTAACAATGAACTTCCATGCACTGGCACCAATCAAGTACAA
GAAGTCCAATGTCACCGGGATGGTATATCGAATTCATCGTGCTTGCAGTa
cacctgaaaatttcaaatcaagcaTCAAAAAAGCAAAATCCATATTACGA
AAGAATCAATATCCTCCTTCATTTTACGAACCACTTATTAAAAAGACCAT
TGAAAAGATCACAAAACCTCCGCAAACAGAAGAACAAAAGGATGAGGAAC
cagaaatgaaaaagttttttctttgatatCGAGGTAAAATTACCGAGCAG
TTTCAACATTCATTAAAAAGGGTCGGCGCTCCAGTGAAAGTTATTTTAAC
GATACGAAAACTTAAAACGTTGTTACCATCATTGAAAACACCTGttgaaa
aagaatacaaaagtTGGGTAGTTTATCAGATAAATTGTTCACGCTGTCAG
TCGTAGTAGAGGGCATATTGTAAAATCgctggaatgttttgatcaaagca
cttgttttacatttttggaaagctaaggggtaagggaatcgaaattacaa
tgtttccaattttttttcggacactttggtgtgattttcggacaaatatg
acggtctcaggcaaaaatcatagggttaaaaattaatgaaaattttagct
cgagaaaacggagacctgttgtatatttttggaaagctctcaaaaaatta
agattagagatatattgcaagtataggtgatttcagtacctaactcgaga
tattgagcttcaaaaagcgcaaaaactggacaaaatagctgtttctggct
gaaaacacggttttcaagggttaatatctcgagttaggtacagaaatcac
ctatacttgcaatatatctctaatcttaattttttgagagctttccaaaa
atatacaacaggtctccgttttctcgagctaaaattttcattaactttta
gaccgtcatatttgtccgaaaatcacaccaaagtgtccgaaaaaaaattg
gaaacattgtaatttcgattcccctaccccttagctttgcaaaaatgtat
aacaagtgcttctaacaaaacattcgagcgattccaaaaaatcgtacaaa
attccccctactatcgTGTTATGTTGGGCAAACAGCCAGACATCTTTTAT
CCCGTATTCGAGAGCACAGGAATGCTAATACACCAGTGGGAAGCCATTTT
CGTAGCTGTAATGTTGAACTTAAAATGATTGATGTGAAAATAATTGCACA
ATCAGCTAAATCTGAATTTCATCTTATGGCCCTTGAGGCCTTATGCATTC
AAGCCATTAAGCCTTCTTTGAACACAAAGGAAGAGTTCAAAAGTAGAACG
CTTGTCTTGAGAATTTGAATTGTCATGGGATAAATGATCAATTATCATGG
GATGATTGATCAATTATCACATGCCAGTTTTGAATTCTTACGACTGgcgt
ttgaaaatttgagctcattcTTTGAGTTGAGTTGATATAGAGAGTATTTG
ACGTGTAAATATTGAAGttttttagcaagcagttttactgtttttaactt
ttatcttttatttattttttagacctgatgatgatacaaaagtatcgaaa
tatattgtcaagtaaaattaaaataaaatgaagttacATCGTTGATATTT
CACTTCTGatatcaaaattcacaatgtttttACCGAGAAGAATGTCTAAT
ATACCAATGACGTCCCAATGGGCTGTCAAATCCAGTACCTCTGGGATTAA
AGTACCTTTGGTAAATCCTGTTAGTTGTTTGGGCATTAATACTTAGCAAA
ATAATAACATactaaaaatgagaatttaTTCCTTATTACAGTGTGTCATG
CTGAGATGAATGCAATCATGAACAAAAACTCTGCTTCTGTCAAGAATTGT
ACCATATATGTAGCTCTTTTTCCTTGCAATGAGTGTGCAAAGCTCATTGT
CCAATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTGAAT
CTATGGAAGCTAAAGCATCCCGAAGAATGTTTGAATTGGCTGGGATTAAG
TACAGGTATGACAACTGATccatttcttcattttatttggtCTAAAGTTT
AGAGTCAGGTGCACCTAGGAAAGGCTGATATAGttttttttGATGTCGTC
TCTTTGATATTGTTTTTGAGAGAGTGAATCCTTGTCAACACTTCAAACAA
CTACTTGGCAGTCAGCCTTTTGCATTTTTGCAATGTTGTGGTGTTCATAA
TTcaacaaaaagtttattttgactCTATTGAAATTATTTGGGCATTTTAA
TGTTGCAGATGTGTGTTTCAAAAAGCCTAAAGAAACTGATGAATGAGTGT
TCTCGTAAACGACCAATCAACATTTGAATCCTCAGATTTAAATGCCGACA
ATCTAGATAAAGCAGACTGAACCATagacaaagataaaaaactagactgt
ggaATAGTTCAGCGTCTAGATATACAGGCTATAAAGTTACAATTCCTTGA
GATTTGAAACTAAGAACAGTACTGAAttacaattttcaaatattttcttt
acaaTTCACAGGCAGCATATCCCGAAAGCAGAGAAATTAGTTATTGATTT
TTCTGTcatcaataaaaacaaatctcAACCAACTGGTATGAAGTCTTCAG
CTATGAGGAAATGATTTTAATAAAGTACATCGTTTTATTGTATCTTACTT
TACCCTTGTTTTCTGAGAGGAAACAATATAAAACTGAATATATATGATGA
TCAACATCAATAAAGTTTATTATCAACTAAACTGTGTAAATGggatcttc
cagaaaaaattgaatatggggggtggaggatatataacatttttttggga
aatttacccccggacattgtgaattttgacccccctGACAACAGATCTTA
CCcacggacaagcatcagttgactccccagacattcaaaatcacccctat
ACAGAGCAAGTTTGTccccaaaacaaggcaaatttttcagatttcacACT
ATCCTCAGGCAAAATATCCAattatcctccacccccatgtacaaatattt
tctggaagagcccaattagTTGTTATGTAAATAAGAGTGgtgtaaaaaat
ataatatttggACAGTCatttagaaatattattttaaaatcgACAAATTC
TTTTACTGTAAAATAGTATGATATTAGTAGAAGCAGATGTCATTTTGTAA
CTATTATATAAATTAATAgctgtaatttttttgtacaaagaatGATATGA
AAATCACCTCTCCTTGCGTTTAATGCTTTATTCGTGAAAAGTATATTGAT
TAGCCGAATCAGGTCTG

Coding sequence (CDS) from alignment at sc0000097_pilon:572695..580061+

>MSTRG.12715.1.p1 ID=MSTRG.12715.1.p1|Name=MSTRG.12715.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1818bp|location=Sequence derived from alignment at sc0000097_pilon:572695..580061+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCACAGATTAATGGAGAGAGAGTTGAAAAAGAGCTTGATTTCGATAA
AATTGACATAAATTCCAAACGCAAAGAATATTTAAGTTGGGAAGACTATT
TTATGGCAACAGCTTTTCTAGCAGCTCAAAGAAGTAAGGATCCTTCATCA
CAAGTGGGTGCTTGCATTGTAAATGACGAAAAGAGAATTGTTGGGGTAGG
CTACAATGGGATGCCAACTGGGTGTGATGATGAAGAACTGTCATGGTCAA
GAGTTGGAGAAACATATTTGGATACAAAATATGCTTATGTGTGTCATGCT
GAGATGAATGCAATCATGAACAAAAACTCTGCTTCTGTCAAGAATTGTAC
CATATATGTAGCTCTTTTTCCTTGCAATGAGTGTGCAAAGCTCATTGTCC
AATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTGAATCT
ATGGAAGCTAAAGCATCCCGAAGAATGTTTGAATTGGCTGGGATTAAGTA
CAGGCAGCATATCCCGAAAGCAGAGAAATTAGTTATTGATTTTTCTGTca
tcaataaaaacaaatctcAACCAACTGGTATGAAGTCTTCAGCTATGAGG
AAATGAATGGCACAGATTAATGGAGAGAGAGTTGAAAAAGAGCTTGATTT
CGATAAAATTGACATAAATTCCAAACGCAAAGAATATTTAAGTTGGGAAG
ACTATTTTATGGCAACAGCTTTTCTAGCAGCTCAAAGAAGTAAGGATCCT
TCATCACAAGTGGGTGCTTGCATTGTAAATGACGAAAAGAGAATTGTTGG
GGTAGGCTACAATGGGATGCCAACTGGGTGTGATGATGAAGAACTGTCAT
GGTCAAGAGTTGGAGAAACATATTTGGATACAAAATATGCTTATGTGTGT
CATGCTGAGATGAATGCAATCATGAACAAAAACTCTGCTTCTGTCAAGAA
TTGTACCATATATGTAGCTCTTTTTCCTTGCAATGAGTGTGCAAAGCTCA
TTGTCCAATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGT
GAATCTATGGAAGCTAAAGCATCCCGAAGAATGTTTGAATTGGCTGGGAT
TAAGTACAGGCAGCATATCCCGAAAGCAGAGAAATTAGTTATTGATTTTT
CTGTcatcaataaaaacaaatctcAACCAACTGGTATGAAGTCTTCAGCT
ATGAGGAAATGAATGGCACAGATTAATGGAGAGAGAGTTGAAAAAGAGCT
TGATTTCGATAAAATTGACATAAATTCCAAACGCAAAGAATATTTAAGTT
GGGAAGACTATTTTATGGCAACAGCTTTTCTAGCAGCTCAAAGAAGTAAG
GATCCTTCATCACAAGTGGGTGCTTGCATTGTAAATGACGAAAAGAGAAT
TGTTGGGGTAGGCTACAATGGGATGCCAACTGGGTGTGATGATGAAGAAC
TGTCATGGTCAAGAGTTGGAGAAACATATTTGGATACAAAATATGCTTAT
GTGTGTCATGCTGAGATGAATGCAATCATGAACAAAAACTCTGCTTCTGT
CAAGAATTGTACCATATATGTAGCTCTTTTTCCTTGCAATGAGTGTGCAA
AGCTCATTGTCCAATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAAAA
AATGGTGAATCTATGGAAGCTAAAGCATCCCGAAGAATGTTTGAATTGGC
TGGGATTAAGTACAGGCAGCATATCCCGAAAGCAGAGAAATTAGTTATTG
ATTTTTCTGTcatcaataaaaacaaatctcAACCAACTGGTATGAAGTCT
TCAGCTATGAGGAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12715MSTRG.12715Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12715.1.p1MSTRG.12715.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12715.1.p1.exon1MSTRG.12715.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12715.1.p1.exon2MSTRG.12715.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12715.1.p1.exon3MSTRG.12715.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097_pilongenomesc0000097_pilon:572695..580061 +