MSTRG.12711.3.p1 (mRNA) -

Overview
NameMSTRG.12711.3.p1
Unique NameMSTRG.12711.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000097_pilon:501674..504018-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12711.3.p1 ID=MSTRG.12711.3.p1|Name=MSTRG.12711.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2345bp|location=Sequence derived from alignment at sc0000097_pilon:501674..504018- (Clytia hemisphaerica_ch_hm2_pilon)
TTAATACATTCTCTATTAGGGTTAACCAGTGTATTAAAATTAAAATGTGA
AAAAACTTACAAGATAAAGATGCTGGTTGTTAGAGGTAAAAATTTGATAG
TAAAGTTCACACATTTAAATATTTTGGTTTCACCTTTGCATCGGGTACTA
AATTTTCCATGTTTTTTAAGCAATCTTATTGCCCCTGCTCTGTCTCCTAT
ATTACTAGTCCTTGAATTCCATAACTATATTAGGATTTTTGAATAAAATT
TAAATATTGAATTGCCAATAGTAATAACATAGGATTGGAATAGAACTATT
TTCCCGGTAAGTGTTTTGTACTGATTTCTTATTTTCAAAGTGTTTCGTTT
CTTCTATACAGGTTGTTTAGTGGCTTTTGCACTCACTGTTGCTGTATCCC
TTGCTGAAGATGGAAAAGGTTTGTATATCATTTCATCAGAAAACATGACA
AAGACGACAATAAAACTTATTGACGCACAGTAGTTAGTTAATTTGCTTGA
AAGTTCAGTATGAAGAGTAAAAAGACATAGAAAAGATTATATTTATCTTT
ACAAATTTTCTCCTCACTTGTGAGTACAAGTGAGATTGAATCTTAAAGAT
ACATTAGGCAGTGATATTGAGTCTATTTTCACAATAGACAAATGCATGGA
ATCCCTTGGTGCAGAGTATGGTGGATACTTACCGGATTCTGCTTTCACTG
CATCTTCATCAACCTCCAACTACAATGCTGTCAAAGGCCGTCTGAATACA
CCAAGAACCGCGTGGATTCCTAAAAATTATCAACCAGACCACGATGCTGT
CACATCAAAAGATTATTTACAAATTGATCTTCAGCGTCCGAAAACCATAA
CAGCTGTTTCAACTCAAGGAATGCAAGCAAAACTTTTTGTGCGGACCTTT
TCTCTTGCATTTAGTCAGGATGGGGAAACTTTTGATCAATATATGCATGG
TAGCTATTCTCATAAGGTAAATTGTTCTATTTTTTATTGTTATGTGTTTT
TTAAATACCAACTCTTCCGAACTGTTCGTTTTGAAAAAATGATGTCTTAT
TTTGTTGTTATAATGTATGTCTCATAGTTTTTAGGATTTTTTTAGTATTG
AGGAAGATAAATGAACCTAATTAAACTTATTTATTATAGTTTTCTTTTTC
CTATTTATTATGAATTTATAGATATTTGATGGAAATATAGATGGGACTAC
GGTGGTAAAAAGTAGATTACCTTGCCCAGTTGTGGCACGCTATGTTCGAT
TCATCCCAGAATGGTTTATCCAAGGTGGAGGAATTGCACTCAAAGCTGGT
GTTTATGGATGTAATGAAGTGAAAAGGCCAAGTAAGAATTGTGTTAATTG
TTTGAAAGTTTTTTTTCAATTTAATGCCTCTTTGATTATAAGGATTCCAA
AATTATCAAGCCATAGAAACCTCTTTGAAGTTATATTGCTACAAAATACA
GCTCTGATCATGATATTAATATTTGATATTTCAGCGTCAAGTGTATCACA
ATTTCGGCATGGAACTAAAGAAGCAAATAGTATTACCATTAGCTGGAAGA
ATGTCCAACAAGTTGGTTTATTTACACTCCAATATTATCCTGCTGAAACT
CAAAAGCCAAGCCGCTGGTTTTCTGTTGCCATCAAAAACGAAACTCTACC
GGCAACATATGAGAGAAGAATATCAGCACTTTCAAGTTGTACAAAATACA
AATTTGTCTTGCGAGCCTATCCATATTCAAAATGTGGTATCACAGAGGTC
TTTACGCAAGAAGTGCTGACCAAAGAGTCGCGTAATTATTTCATTTTTTA
TTTTTTTTAATCTTCCGAGACAATTATTTTCAAAAATATTTTAACTTTCC
TGGGATTTATTTTCGTAAATTGGACCCTTTTTCAACTAAAATTTCTCTAA
TTTTCCTAGGGTTTTTTTTGGCTAAAAATCTAAGGTTTTTGGCAAAAATC
CTGGTTGAAAAATTTTCACAAGCATTAAATTTTGCAAATTTTCAGAAAAT
CTGTCGAAATTGGCAAAATGTAATCTGCACCTAAATTAACCCACTTGAGA
CTATGTCACTCTTAGAATTTATTCTGATTGAATTCTCTTAGTTCTAGTAT
TTACTTCTGAGGCTTGATTCAAGGTCCATTGAAACCATTGAGAATCGGTA
CATAAGATGATAATAATTTTGAATAGAAAAATGAAATCCAATTATATGTG
TATACTAAGAAAATATCTTCTGTTATTTTATTCAAAGGTCGAAAGTAATA
TTTAATTTTGTTTACACAAATTACCAGGTCCACCTGCACCACAAAAGCTT
GATGCTAAGAATGACGAGCCAAACACACTCGAATTATCTTGGGTT

Coding sequence (CDS) from alignment at sc0000097_pilon:501674..504018-

>MSTRG.12711.3.p1 ID=MSTRG.12711.3.p1|Name=MSTRG.12711.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5688bp|location=Sequence derived from alignment at sc0000097_pilon:501674..504018- (Clytia hemisphaerica_ch_hm2_pilon)
GTCCACCTGCACCACAAAAGCTTGACGTCAAGTGTATCACAATTTCGGCA
TGGAACTAAAGAAGCAAATAGTATTACCATTAGCTGGAAGAATGTCCAAC
AAGTTGGTTTATTTACACTCCAATATTATCCTGCTGAAACTCAAAAGCCA
AGCCGCTGGTTTTCTGTTGCCATCAAAAACGAAACTCTACCGGCAACATA
TGAGAGAAGAATATCAGCACTTTCAAGTTGTACAAAATACAAATTTGTCT
TGCGAGCCTATCCATATTCAAAATGTGGTATCACAGAGGTCTTTACGCAA
GAAGTGCTGACCAAAGAATATTTGATGGAAATATAGATGGGACTACGGTG
GTAAAAAGTAGATTACCTTGCCCAGTTGTGGCACGCTATGTTCGATTCAT
CCCAGAATGGTTTATCCAAGGTGGAGGAATTGCACTCAAAGCTGGTGTTT
ATGGATGTAATGAAGTGAAAAGGCCAAACAAATGCATGGAATCCCTTGGT
GCAGAGTATGGTGGATACTTACCGGATTCTGCTTTCACTGCATCTTCATC
AACCTCCAACTACAATGCTGTCAAAGGCCGTCTGAATACACCAAGAACCG
CGTGGATTCCTAAAAATTATCAACCAGACCACGATGCTGTCACATCAAAA
GATTATTTACAAATTGATCTTCAGCGTCCGAAAACCATAACAGCTGTTTC
AACTCAAGGAATGCAAGCAAAACTTTTTGTGCGGACCTTTTCTCTTGCAT
TTAGTCAGGATGGGGAAACTTTTGATCAATATATGCATGGTAGCTATTCT
CATAAGGTTGTTTAGTGGCTTTTGCACTCACTGTTGCTGTATCCCTTGCT
GAAGATGGAAAAGTTAATACATTCTCTATTAGGGTTAACCAGTGTATTAA
AATTAAAATGTGAAAAAACTTACAAGATAAAGATGCTGGTTGTTAGAGGT
CCACCTGCACCACAAAAGCTTGACGTCAAGTGTATCACAATTTCGGCATG
GAACTAAAGAAGCAAATAGTATTACCATTAGCTGGAAGAATGTCCAACAA
GTTGGTTTATTTACACTCCAATATTATCCTGCTGAAACTCAAAAGCCAAG
CCGCTGGTTTTCTGTTGCCATCAAAAACGAAACTCTACCGGCAACATATG
AGAGAAGAATATCAGCACTTTCAAGTTGTACAAAATACAAATTTGTCTTG
CGAGCCTATCCATATTCAAAATGTGGTATCACAGAGGTCTTTACGCAAGA
AGTGCTGACCAAAGAATATTTGATGGAAATATAGATGGGACTACGGTGGT
AAAAAGTAGATTACCTTGCCCAGTTGTGGCACGCTATGTTCGATTCATCC
CAGAATGGTTTATCCAAGGTGGAGGAATTGCACTCAAAGCTGGTGTTTAT
GGATGTAATGAAGTGAAAAGGCCAAACAAATGCATGGAATCCCTTGGTGC
AGAGTATGGTGGATACTTACCGGATTCTGCTTTCACTGCATCTTCATCAA
CCTCCAACTACAATGCTGTCAAAGGCCGTCTGAATACACCAAGAACCGCG
TGGATTCCTAAAAATTATCAACCAGACCACGATGCTGTCACATCAAAAGA
TTATTTACAAATTGATCTTCAGCGTCCGAAAACCATAACAGCTGTTTCAA
CTCAAGGAATGCAAGCAAAACTTTTTGTGCGGACCTTTTCTCTTGCATTT
AGTCAGGATGGGGAAACTTTTGATCAATATATGCATGGTAGCTATTCTCA
TAAGGTTGTTTAGTGGCTTTTGCACTCACTGTTGCTGTATCCCTTGCTGA
AGATGGAAAAGTTAATACATTCTCTATTAGGGTTAACCAGTGTATTAAAA
TTAAAATGTGAAAAAACTTACAAGATAAAGATGCTGGTTGTTAGAGGTCC
ACCTGCACCACAAAAGCTTGACGTCAAGTGTATCACAATTTCGGCATGGA
ACTAAAGAAGCAAATAGTATTACCATTAGCTGGAAGAATGTCCAACAAGT
TGGTTTATTTACACTCCAATATTATCCTGCTGAAACTCAAAAGCCAAGCC
GCTGGTTTTCTGTTGCCATCAAAAACGAAACTCTACCGGCAACATATGAG
AGAAGAATATCAGCACTTTCAAGTTGTACAAAATACAAATTTGTCTTGCG
AGCCTATCCATATTCAAAATGTGGTATCACAGAGGTCTTTACGCAAGAAG
TGCTGACCAAAGAATATTTGATGGAAATATAGATGGGACTACGGTGGTAA
AAAGTAGATTACCTTGCCCAGTTGTGGCACGCTATGTTCGATTCATCCCA
GAATGGTTTATCCAAGGTGGAGGAATTGCACTCAAAGCTGGTGTTTATGG
ATGTAATGAAGTGAAAAGGCCAAACAAATGCATGGAATCCCTTGGTGCAG
AGTATGGTGGATACTTACCGGATTCTGCTTTCACTGCATCTTCATCAACC
TCCAACTACAATGCTGTCAAAGGCCGTCTGAATACACCAAGAACCGCGTG
GATTCCTAAAAATTATCAACCAGACCACGATGCTGTCACATCAAAAGATT
ATTTACAAATTGATCTTCAGCGTCCGAAAACCATAACAGCTGTTTCAACT
CAAGGAATGCAAGCAAAACTTTTTGTGCGGACCTTTTCTCTTGCATTTAG
TCAGGATGGGGAAACTTTTGATCAATATATGCATGGTAGCTATTCTCATA
AGGTTGTTTAGTGGCTTTTGCACTCACTGTTGCTGTATCCCTTGCTGAAG
ATGGAAAAGTTAATACATTCTCTATTAGGGTTAACCAGTGTATTAAAATT
AAAATGTGAAAAAACTTACAAGATAAAGATGCTGGTTGTTAGAGGTCCAC
CTGCACCACAAAAGCTTGACGTCAAGTGTATCACAATTTCGGCATGGAAC
TAAAGAAGCAAATAGTATTACCATTAGCTGGAAGAATGTCCAACAAGTTG
GTTTATTTACACTCCAATATTATCCTGCTGAAACTCAAAAGCCAAGCCGC
TGGTTTTCTGTTGCCATCAAAAACGAAACTCTACCGGCAACATATGAGAG
AAGAATATCAGCACTTTCAAGTTGTACAAAATACAAATTTGTCTTGCGAG
CCTATCCATATTCAAAATGTGGTATCACAGAGGTCTTTACGCAAGAAGTG
CTGACCAAAGAATATTTGATGGAAATATAGATGGGACTACGGTGGTAAAA
AGTAGATTACCTTGCCCAGTTGTGGCACGCTATGTTCGATTCATCCCAGA
ATGGTTTATCCAAGGTGGAGGAATTGCACTCAAAGCTGGTGTTTATGGAT
GTAATGAAGTGAAAAGGCCAAACAAATGCATGGAATCCCTTGGTGCAGAG
TATGGTGGATACTTACCGGATTCTGCTTTCACTGCATCTTCATCAACCTC
CAACTACAATGCTGTCAAAGGCCGTCTGAATACACCAAGAACCGCGTGGA
TTCCTAAAAATTATCAACCAGACCACGATGCTGTCACATCAAAAGATTAT
TTACAAATTGATCTTCAGCGTCCGAAAACCATAACAGCTGTTTCAACTCA
AGGAATGCAAGCAAAACTTTTTGTGCGGACCTTTTCTCTTGCATTTAGTC
AGGATGGGGAAACTTTTGATCAATATATGCATGGTAGCTATTCTCATAAG
GTTGTTTAGTGGCTTTTGCACTCACTGTTGCTGTATCCCTTGCTGAAGAT
GGAAAAGTTAATACATTCTCTATTAGGGTTAACCAGTGTATTAAAATTAA
AATGTGAAAAAACTTACAAGATAAAGATGCTGGTTGTTAGAGGTCCACCT
GCACCACAAAAGCTTGACGTCAAGTGTATCACAATTTCGGCATGGAACTA
AAGAAGCAAATAGTATTACCATTAGCTGGAAGAATGTCCAACAAGTTGGT
TTATTTACACTCCAATATTATCCTGCTGAAACTCAAAAGCCAAGCCGCTG
GTTTTCTGTTGCCATCAAAAACGAAACTCTACCGGCAACATATGAGAGAA
GAATATCAGCACTTTCAAGTTGTACAAAATACAAATTTGTCTTGCGAGCC
TATCCATATTCAAAATGTGGTATCACAGAGGTCTTTACGCAAGAAGTGCT
GACCAAAGAATATTTGATGGAAATATAGATGGGACTACGGTGGTAAAAAG
TAGATTACCTTGCCCAGTTGTGGCACGCTATGTTCGATTCATCCCAGAAT
GGTTTATCCAAGGTGGAGGAATTGCACTCAAAGCTGGTGTTTATGGATGT
AATGAAGTGAAAAGGCCAAACAAATGCATGGAATCCCTTGGTGCAGAGTA
TGGTGGATACTTACCGGATTCTGCTTTCACTGCATCTTCATCAACCTCCA
ACTACAATGCTGTCAAAGGCCGTCTGAATACACCAAGAACCGCGTGGATT
CCTAAAAATTATCAACCAGACCACGATGCTGTCACATCAAAAGATTATTT
ACAAATTGATCTTCAGCGTCCGAAAACCATAACAGCTGTTTCAACTCAAG
GAATGCAAGCAAAACTTTTTGTGCGGACCTTTTCTCTTGCATTTAGTCAG
GATGGGGAAACTTTTGATCAATATATGCATGGTAGCTATTCTCATAAGGT
TGTTTAGTGGCTTTTGCACTCACTGTTGCTGTATCCCTTGCTGAAGATGG
AAAAGTTAATACATTCTCTATTAGGGTTAACCAGTGTATTAAAATTAAAA
TGTGAAAAAACTTACAAGATAAAGATGCTGGTTGTTAGAGGTCCACCTGC
ACCACAAAAGCTTGACGTCAAGTGTATCACAATTTCGGCATGGAACTAAA
GAAGCAAATAGTATTACCATTAGCTGGAAGAATGTCCAACAAGTTGGTTT
ATTTACACTCCAATATTATCCTGCTGAAACTCAAAAGCCAAGCCGCTGGT
TTTCTGTTGCCATCAAAAACGAAACTCTACCGGCAACATATGAGAGAAGA
ATATCAGCACTTTCAAGTTGTACAAAATACAAATTTGTCTTGCGAGCCTA
TCCATATTCAAAATGTGGTATCACAGAGGTCTTTACGCAAGAAGTGCTGA
CCAAAGAATATTTGATGGAAATATAGATGGGACTACGGTGGTAAAAAGTA
GATTACCTTGCCCAGTTGTGGCACGCTATGTTCGATTCATCCCAGAATGG
TTTATCCAAGGTGGAGGAATTGCACTCAAAGCTGGTGTTTATGGATGTAA
TGAAGTGAAAAGGCCAAACAAATGCATGGAATCCCTTGGTGCAGAGTATG
GTGGATACTTACCGGATTCTGCTTTCACTGCATCTTCATCAACCTCCAAC
TACAATGCTGTCAAAGGCCGTCTGAATACACCAAGAACCGCGTGGATTCC
TAAAAATTATCAACCAGACCACGATGCTGTCACATCAAAAGATTATTTAC
AAATTGATCTTCAGCGTCCGAAAACCATAACAGCTGTTTCAACTCAAGGA
ATGCAAGCAAAACTTTTTGTGCGGACCTTTTCTCTTGCATTTAGTCAGGA
TGGGGAAACTTTTGATCAATATATGCATGGTAGCTATTCTCATAAGGTTG
TTTAGTGGCTTTTGCACTCACTGTTGCTGTATCCCTTGCTGAAGATGGAA
AAGTTAATACATTCTCTATTAGGGTTAACCAGTGTATTAAAATTAAAATG
TGAAAAAACTTACAAGATAAAGATGCTGGTTGTTAGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12711MSTRG.12711Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12711.3.p1MSTRG.12711.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12711.3.p1.exon6MSTRG.12711.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12711.3.p1.exon5MSTRG.12711.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12711.3.p1.exon4MSTRG.12711.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12711.3.p1.exon3MSTRG.12711.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12711.3.p1.exon2MSTRG.12711.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12711.3.p1.exon1MSTRG.12711.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097_pilongenomesc0000097_pilon:501674..504018 -