MSTRG.12692.1.p1 (mRNA) -

Overview
NameMSTRG.12692.1.p1
Unique NameMSTRG.12692.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000097_pilon:205484..207908+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12692.1.p1 ID=MSTRG.12692.1.p1|Name=MSTRG.12692.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2425bp|location=Sequence derived from alignment at sc0000097_pilon:205484..207908+ (Clytia hemisphaerica_ch_hm2_pilon)
GTTTAGggtgataaaaaatcaaaacattgcagAAACGAGGATAAATTAAG
TAGAAATTAGTTGGAAGCCAGTTATAATGACCTTTGAATGCAGTTAATTA
AGTGAAATTTTGATCAATTATTGTGGAATTTGAAGTTTTAAGAAGATGGA
TTACAacactgtgaaaaaaatgaaagttaatgagctgaaaagttttctCA
GACTTCGAGACATGAGACTTTCTGGGAATAAAGAAAACCTCAGAGCTAGA
GTGTTGGTTGCAATTGAAAATGGGGTGAAGCCTGTAAAAACTGCAGAGGA
AATTGAAGGAGAACTGCTCAGAGAATATAATGATAAACTGACATGCAAAG
GTATCTCAATCCCCGATCCATTCAATCTTCAAGATGGTTGGAAACCTGAA
GCAATTGGAGTCAAGGAGTGGCCAATGATATCAACATTATATATCATAAA
ATTTCTTATGTTGGATGAAACCATCGGAGACTTGAATGACTACAAGAAGT
CTAAAGCATATAGCTATTTCGAGAGAGGATGGCTTGGAAAGATAGACTTT
CATCCCTTGAAAGACACACCATTTTGTCTGATGAGAACTGATTGCCGTCC
ATCACAGAGAATATCAGACACTCTTCATAAACTTTGGCTGCTTTTTTCAA
AGGACACAGGAAATGTGCTTGAAGCCCACTGTACATGTATGGCAGGTATG
GGTTCTTCCTGTAATCATGTTGCTGCTGCCTTGTTTCGCATTGAGGCAGC
TATGCGTTATGGTTTGTCAAATCCGTCATCAACATCTCTACCAAACGAAT
GGCTACCTAATCGTAATGAGGTACAACCATCTAAAGCAAAGAATATTGAT
TTTAATAGGGATGATTTTGCTAAGCGAGGCAAGTCGAGAAAGAAGCTTTT
TAGTACCCCTAAGAAGAATTATCATCCATTaccaataaaaagaaaaacta
caaaaacactatcttttgaaaaaattgtggaaacgctaaaagaaaaaGAC
CTAATGAAGGACACCACACTCTCAACAGCAGCTCCTCAACCTGAGATAGA
CTTTGTTGTTGAATCTGTAAGAAAACCAGATCACGTTTCAGATTTACCAT
GTATTGATGATGTTATTGTTGTTGAATCTGTAAGAAAACCAGATCACGTT
TCAAATTTACCATGTATTGATGATGTTATTTTAACCTCGAAATCGACAGA
TGAATTTCTGACAAATGTTACCAATGATTTGACCAATGATATTATTGATA
AAATTGAGGTAGCTACTAAAGGACAGAGTACCAATGAACTATGGTATCAA
CATAGAAAAAGTGTCATAACTGCTTCTAAAGTGCATGAAGTGAAAACTAA
AATGGAGACTATAAAAGGATATCAGAAAGGGGATGAACGAAGTGAAGTTT
TAATGTGGAGTTTAACGaaaaaaaTAGCTGGGTTTACTTTCTTAAACCCA
AATAATCCTGCGTTGAAATATGGTAGAGAAATGGAGGGAATGGCATCTTC
AAAActtcttgattttctaaaaactaAACATAAAGGAGCCAAAATCAGAG
ACTGTGGTTTGCTTCTTCACAAGAATAAACCTTTTATTGGAGCTAGTCCT
GATGGCATATTTTCATGTGATTGCTGTAAGGAGGAAGTGTGTATCGAAAT
CAAATGTCCGTATTCAATAAGCTACCTTTCCCCGACTGATGAAAATGCAA
AGCTTCGTTACATGATAAAAACTGACCAAGGACTGAGATTGAGAGAATCT
CATCAATATTTCAGCCAGTGTCAATTTCAAATGGGTGTGTGgaacttgaa
aaaatgtttctttttcgtTTATACTGCCCATGGTTTTATATTAAATGAAA
TTAGATttgataccaattttttttctgagttGTCAGAAAAGTGTAGTAAT
TTTTATAAAGAATATTATTTACCATCAATTTTCTTAGCTTGATATTCTTA
AAGGCAAATTATAatcttttgaaacttttggaaGTCTCTACACCCTGTTG
AGAATTAAAAAGAAGCaagattcaactttttcaacgaCAAGATCCAATTC
AAGattcaacttttttattcagtcttttgtttgaaaaataagattaaaaa
aaaaacatttttaaaaaggttttatgtacatgtagtatatatttttattt
ttacacattctttccattctttacaggcttttttaattccaatttgtcat
taatttttcaagaaagttGTCTTTTTATGTTTGTTAGTCTTGGGCTTTAT
Tcactctttatttttttgtattttcaaataaatttcctttgtttttaagc
cattgaaatagggatttgattttgAAGGTGGGCTCAAAGTTAAAACTAca
ttcatttaaatttttttttaacttatcTATTGTCAATTGTGTTGAAATTC
ATTGACAATCAACTATTCGTCTTTT

Coding sequence (CDS) from alignment at sc0000097_pilon:205484..207908+

>MSTRG.12692.1.p1 ID=MSTRG.12692.1.p1|Name=MSTRG.12692.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1797bp|location=Sequence derived from alignment at sc0000097_pilon:205484..207908+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTACAacactgtgaaaaaaatgaaagttaatgagctgaaaagttt
tctCAGACTTCGAGACATGAGACTTTCTGGGAATAAAGAAAACCTCAGAG
CTAGAGTGTTGGTTGCAATTGAAAATGGGGTGAAGCCTGTAAAAACTGCA
GAGGAAATTGAAGGAGAACTGCTCAGAGAATATAATGATAAACTGACATG
CAAAGGTATCTCAATCCCCGATCCATTCAATCTTCAAGATGGTTGGAAAC
CTGAAGCAATTGGAGTCAAGGAGTGGCCAATGATATCAACATTATATATC
ATAAAATTTCTTATGTTGGATGAAACCATCGGAGACTTGAATGACTACAA
GAAGTCTAAAGCATATAGCTATTTCGAGAGAGGATGGCTTGGAAAGATAG
ACTTTCATCCCTTGAAAGACACACCATTTTGTCTGATGAGAACTGATTGC
CGTCCATCACAGAGAATATCAGACACTCTTCATAAACTTTGGCTGCTTTT
TTCAAAGGACACAGGAAATGTGCTTGAAGCCCACTGTACATGTATGGCAG
GTATGGGTTCTTCCTGTAATCATGTTGCTGCTGCCTTGTTTCGCATTGAG
GCAGCTATGCGTTATGGTTTGTCAAATCCGTCATCAACATCTCTACCAAA
CGAATGGCTACCTAATCGTAATGAGGTACAACCATCTAAAGCAAAGAATA
TTGATTTTAATAGGGATGATTTTGCTAAGCGAGGCAAGTCGAGAAAGAAG
CTTTTTAGTACCCCTAAGAAGAATTATCATCCATTaccaataaaaagaaa
aactacaaaaacactatcttttgaaaaaattgtggaaacgctaaaagaaa
aaGACCTAATGAAGGACACCACACTCTCAACAGCAGCTCCTCAACCTGAG
ATAGACTTTGTTGTTGAATCTGTAAGAAAACCAGATCACGTTTCAGATTT
ACCATGTATTGATGATGTTATTGTTGTTGAATCTGTAAGAAAACCAGATC
ACGTTTCAAATTTACCATGTATTGATGATGTTATTTTAACCTCGAAATCG
ACAGATGAATTTCTGACAAATGTTACCAATGATTTGACCAATGATATTAT
TGATAAAATTGAGGTAGCTACTAAAGGACAGAGTACCAATGAACTATGGT
ATCAACATAGAAAAAGTGTCATAACTGCTTCTAAAGTGCATGAAGTGAAA
ACTAAAATGGAGACTATAAAAGGATATCAGAAAGGGGATGAACGAAGTGA
AGTTTTAATGTGGAGTTTAACGaaaaaaaTAGCTGGGTTTACTTTCTTAA
ACCCAAATAATCCTGCGTTGAAATATGGTAGAGAAATGGAGGGAATGGCA
TCTTCAAAActtcttgattttctaaaaactaAACATAAAGGAGCCAAAAT
CAGAGACTGTGGTTTGCTTCTTCACAAGAATAAACCTTTTATTGGAGCTA
GTCCTGATGGCATATTTTCATGTGATTGCTGTAAGGAGGAAGTGTGTATC
GAAATCAAATGTCCGTATTCAATAAGCTACCTTTCCCCGACTGATGAAAA
TGCAAAGCTTCGTTACATGATAAAAACTGACCAAGGACTGAGATTGAGAG
AATCTCATCAATATTTCAGCCAGTGTCAATTTCAAATGGGTGTGTGgaac
ttgaaaaaatgtttctttttcgtTTATACTGCCCATGGTTTTATATTAAA
TGAAATTAGATttgataccaattttttttctgagttGTCAGAAAAGTGTA
GTAATTTTTATAAAGAATATTATTTACCATCAATTTTCTTAGCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12692MSTRG.12692Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12692.1.p1.exon1MSTRG.12692.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12692.1.p1MSTRG.12692.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097_pilongenomesc0000097_pilon:205484..207908 +