MSTRG.12647.3.p1 (mRNA) -

Overview
NameMSTRG.12647.3.p1
Unique NameMSTRG.12647.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000096_pilon:678666..683373-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12647.3.p1 ID=MSTRG.12647.3.p1|Name=MSTRG.12647.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4708bp|location=Sequence derived from alignment at sc0000096_pilon:678666..683373- (Clytia hemisphaerica_ch_hm2_pilon)
TCATGCCAAAGTATTTAACCCTTGGGTTTTTCTCTCATACTTGTATCACA
TTCACATATTTAGTTTGCTTGCCACAAATCTTGATCATTCATATAAAGCG
GTTGTTAGTGATATGGCATCAAGGATTGGTTTTTGAAGAAGAAAGTTTCA
AAGAGATTAATTTACGAGAAAAGGTGAAACTGACTTGACTGGCATCTTCA
CTGAAGGAACCTTCAAATGGCTTTGCTCCCCTTAGCCAGTATTAGGAAAC
AACCTGATCGTTTTGAGACAGAATTTTCTACTGATTAATAACGTTTAAGT
GTCTGTAAAAAAAGGCTAACAAATAGACTCGGGCACGCTTTATGCTTGGT
GTAGAACACAAATCTATCTAACTCGTGAGCCTTTCTTTAGTAGTTGAAAT
TTCAAATTAAACTTCATCGTCGGTAGGGAAGGGGTGTTAACTTGGCACCT
TCGAATTATACTGCTCCATTATCTTATTATTCGAATAAGACCAGGTTCTT
ACGTAACGGTTCCGTTTCGCTCCGAAACAAAATTAAGCCATTCTATTGGT
TAAAAATGACGTAAGTTTTTAATGTAACCAATAGAATGACTTCAGTTTGT
TTCGGAGTGAGACAAAACCGCAACGTGTGAACGTAATCTTAATTGTACCA
AGAAAAAAACATTTCTCAACTTCTTCTTTCAAAAATAGAAATAACAATGT
CATCATCACCATTAACTATCATTATGGATACCACCCAACAACCAACAACA
CTTGCTTCAACGACTCATCCTTCTGCAGCATTGGAGGGCGACCGATCACG
TGACAATCAGCATGAAAAAGAAAGACAATACATTTCATTGATTGGTTGCT
TGATCACTGTCACTGTCCTTATGATCCTCTTCTGTTTCATATTCTGGAAA
AGGTGAAAAACCTCTTGTATTTCATATCATATATAGAAAATTACGTATTT
AACATCTCCAAGCACATACTCCAATGTAATAGCTGGGCTCCCTCTGATAA
GTGGCGACAAAACCTATTGTGTCCCTGTGGGTAGTCAACCTGTAAGAGAA
TTTTTAACTTTTCATGGTTTTCGTACCCTTAAAGAGACCCAAAAAAGGGG
AAAACTTTTTTTCTCTGATAAAGAGTTTCTTGGGGTGGAGATCACACACT
ACAGTCATTCAATCTTTATTCAAGTATCAGGAACACATCCCTTAATAAAT
GTGTACGATCATAAAACAGTTATGCGAATGACGTCTTTCAGAGATAATGA
GGTCATTTAAATGGCTTTTAAAGCGGAAAGGGAGTTAAAACTCTTATGCT
GCCAAAATATTTCATAAATGATCCTCGCGCAAGTTAGAGAACAAATGAGA
TTTCACAAAGTCGAAGTTGACAGCCAAACCATTTTTTACTTCTCAATTAA
TTTTTATGAAAACATGGAACATCTTTTTACTCCTTGGGTTTATCCAAATC
TTACATATAAGAAATAATCCGGGGAGAGAAGTGAAAATTGGAGACCGTTC
AGAGACCTTTCAAGGACGACAAAGTTCACAAATATTAGCTAACTTTAAAA
CATGATTTAAAAGAAGGATTAGGTGAAGGAGAAGTATGACCATTTATTGC
AGGACGTTCTAGAAGATCTCATCAATTTTTCTTGCTTCCGTTTAGATCCA
ACATACGAAGGTTTTTCAAGGTAATAAGTTTTTTTCGATTCATTTTAACT
TTCTCAGACTGAACCACGTCAAAGATTAAACCTCGAAAACCTGCGACACT
TGCTGTATGAGATCATCAACTAAGTTACAAGGGATTTGCCCCTGAAATTT
TGCGCCTAGCAATTAATCCCTATTTTAAGGGCTCTGACCATAGTCAGAAA
ATTTGTTAAGGGATTCGAAGATAAAACTTTTGTTTTGGGTTGTTTTGGAT
TCCTTGTCATTTTTAACAAAAAAACTGCCTTTACAAGTTGTTCGGTAATT
TATTCTGTCAGTAGAAATTACAAAATGATGTTATGAACTTTAAAAAGACG
TTGATAAAGTTACCCTCTTTTACAAAAAATGTTTCAATGGGTAATTAAAC
TTTTTCTTTTGAAATGCTTTTAAATTGTCCGCAAAGAATTGAACTAAAAA
TTTTTCGGAAAAATTTTCTAAATTGATGTATCAAAAATTGTGTCTTTTTT
AATAATTTTCCTTCTTACATCTTTTCATCTTTCAGCAAAAGAACAAAGCG
ATCGTAGTGAAGATGATTGAATACCGTCGAGAATATCGAAGAAATGCTAT
CACTGAGGATACTTATGACAATATTTTCAATGAAGGTACTTCATTTACCT
CAATTGCAATTAACTTTTCTCTGCTTGGAGTTCTATTTTTTACCCGTATT
TTTCTGGTAGTACACTTACCGACCCAGCCACTAAATAGATATTCAGCTCG
AAATTTCTAGGCTGGAATGGCTCCAAATCTCACCTGGTGTACTGAGATTC
TTTTTTATATTAGCTTGGCTGTTTCCATTATTTTAGCAACCCCAAACGGT
TTGCGTGATGACATGATAGACTTTTTTGTAACGTGATAACGTGATTTGGA
AATTCTTTTCTTGGTGATTGTGATTTGCAAAATTATTGAGCTGTGATGCC
TTATTTGGACTTTTTCAAAGGGATGCGTGATCACCCAAACTTTTTTGCTG
ATTTGCGTGATCTTGATTGAAGACAAAAAATTGCGTGATATCGTGATCAG
ATTTACCACTTGGGGGTCTCTTTTAGGACAATATTATCGATGTTTTTCTT
CAAAATCATTTTTCTATTTTCTCATACATAGATTTCAAATCAAAATATCT
CAAGTCAGAGATTTACACTATAGATATGGTAAGTGCAATTATAAATCTTC
TAACCGTACTTTATTTGATAGCATCAATTTTATAAGAAAACTTATTGAAC
TTGTAATAAAATTGTGTCAATTTTTCTTTCAAAACACAAAAGATACCTGA
TTACGCCTAATTTGACAAAGGAACGTTAAATCCAGGTTTAATCTCAATTT
CGCTAAAGCTCACTTTCTTCATACAAGGGTGGTCGTGGGTGGAGCACCCT
TCTTGTTGACTTCGTTCTCTTCTGTTGCGAGATTTATCTCAGTTCAAAAT
GGTAGAAGCCGAGCAACAACACTAAGAGCCTTCGATCTGACTGGAAGCAG
AAAGCTTTGCAATAAAATTTTACCTCTCTCCCACCCTGAAAAGGCGAAAA
TGTTGTAGGCGACACTCGTACATATTCAAAACTTATCGAGCGGTTAGCCA
AAATATATTTCATCAATAAATGATATTTTTCACTTTGATCCCCAGGAAGA
GTGCACAGACGGGGTCAGTTTCACATTCGATCTTGACAAATACGAAATGA
ACGGTAGAGAAGATGTTAAAGAAAAAACAACCAATAAATCTGCCGACCAA
GTCGACCAGAGTGAATTTGCAGATTACCAGATTTCAAAAAAGACCAAAAG
AAATCCATACGAGAACGTCGAAATTGCAGTTCGTTCGAAGACAGACGAGA
TCAAACGCCGACATGACGTCGTCAAAGAGATTGAAGTAGTACGAACTTTT
TCCAGCGGCAAACTTCCTCGACGGAACAACCTTCAAACGAAAATACCTGA
ATTCACATGCTCTGATCCTCATTATGCAGTCCCTGTCGTAACACCAAAAA
CTGATATCCAACCTTTTGAAGCAGGTCTGAACACTAACGATGAGGGGAAA
TTAGAAAGCCCGTACCAAGTGCCGACAGGCGAGAATGAGCGCCAGAGATC
AGTTGAACATTTAGATGGCTTGCTTAACGAGCTCGATGTAGTTTACAAGA
AAACAAAAGAACAAAAAATGAGTGAATATTACAAAAGAGTTTTACAAACA
CCTGTTGAGAAGGAACAAAAGAACAATAATGTAGGTGAAAAAGAAACATC
CATAACTGTTGCTATATTTGCTGAGAAAGATGGCAAAATGTATTTTCCAC
CTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGATTTTAATCC
TAACGAAGACATACTTTCTGGTAAAATGTATTTTCCACCTGCAAAACTTG
AAAAGGTTGGAAGGTTGGACGAGAAATGATTTTAATCCTAACGAAGACAT
ACTTTCTGGTAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTGGAA
GGTTGGACTAGAAATGAGTTTAATCCTAACGAAGACATACTTTCTGGTAA
AATATATTTTCCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGA
AATGATTTTAATCCTAACGAAGACATACTTTCTGGTAAAAAAAGTATTTT
CCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGATTTTA
ATCCTAACGAAGACATACTTTCTGGTAAAATGTATTTTCCACCTGCAAAA
CTTGAAAAGGTTGGAAGATTGGACGAGAAATGGTTTTCTGGCAATGTTGG
TGGGCGTCAGAATGTTGGCGGAATCAAACAATCTGATTCTCATGGAGAAA
AAGGATGCTTACAATAACGGAGATACGAATATCTAACTATAAATTTACCA
ATCTGGTTCACACCCCATTCACAAAATCAATAACTTATTAGAACAAAAAA
GAAACGATGCAAAAATGTTTCTACCGATCCAAAGGGTCGTCATAGTAAAA
GTTGTACACTTTTTTCAATAAAAACAAACTATCACAGGAAAAAATCCGTG
AATCACAT

Coding sequence (CDS) from alignment at sc0000096_pilon:678666..683373-

>MSTRG.12647.3.p1 ID=MSTRG.12647.3.p1|Name=MSTRG.12647.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5370bp|location=Sequence derived from alignment at sc0000096_pilon:678666..683373- (Clytia hemisphaerica_ch_hm2_pilon)
GAAGAGTGCACAGACGGGGTCAGTTTCACATTCGATCTTGACAAATACGA
AATGAACGGTAGAGAAGATGTTAAAGAAAAAACAACCAATAAATCTGCCG
ACCAAGTCGACCAGAGTGAATTTGCAGATTACCAGATTTCAAAAAAGACC
AAAAGAAATCCATACGAGAACGTCGAAATTGCAGTTCGTTCGAAGACAGA
CGAGATCAAACGCCGACATGACGTCGTCAAAGAGATTGAAGTAGTACGAA
CTTTTTCCAGCGGCAAACTTCCTCGACGGAACAACCTTCAAACGAAAATA
CCTGAATTCACATGCTCTGATCCTCATTATGCAGTCCCTGTCGTAACACC
AAAAACTGATATCCAACCTTTTGAAGCAGGTCTGAACACTAACGATGAGG
GGAAATTAGAAAGCCCGTACCAAGTGCCGACAGGCGAGAATGAGCGCCAG
AGATCAGTTGAACATTTAGATGGCTTGCTTAACGAGCTCGATGTAGTTTA
CAAGAAAACAAAAGAACAAAAAATGAGTGAATATTACAAAAGAGTTTTAC
AAACACCTGTTGAGAAGGAACAAAAGAACAATAATGTAGGTGAAAAAGAA
ACATCCATAACTGTTGCTATATTTGCTGAGAAAGATGGCAAAATGTATTT
TCCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGAATTT
CAAATCAAAATATCTCAAGTCAGAGATTTACACTATAGATATGCAAAAGA
ACAAAGCGATCGTAGTGAAGATGATTGAATACCGTCGAGAATATCGAAGA
AATGCTATCACTGAGGATACTTATGACAATATTTTCAATGAAGATCCAAC
ATACGAAGGTTTTTCAAGATGTCATCATCACCATTAACTATCATTATGGA
TACCACCCAACAACCAACAACACTTGCTTCAACGACTCATCCTTCTGCAG
CATTGGAGGGCGACCGATCACGTGACAATCAGCATGAAAAAGAAAGACAA
TACATTTCATTGATTGGTTGCTTGATCACTGTCACTGTCCTTATGATCCT
CTTCTGTTTCATATTCTGGAAAAGGAAGAGTGCACAGACGGGGTCAGTTT
CACATTCGATCTTGACAAATACGAAATGAACGGTAGAGAAGATGTTAAAG
AAAAAACAACCAATAAATCTGCCGACCAAGTCGACCAGAGTGAATTTGCA
GATTACCAGATTTCAAAAAAGACCAAAAGAAATCCATACGAGAACGTCGA
AATTGCAGTTCGTTCGAAGACAGACGAGATCAAACGCCGACATGACGTCG
TCAAAGAGATTGAAGTAGTACGAACTTTTTCCAGCGGCAAACTTCCTCGA
CGGAACAACCTTCAAACGAAAATACCTGAATTCACATGCTCTGATCCTCA
TTATGCAGTCCCTGTCGTAACACCAAAAACTGATATCCAACCTTTTGAAG
CAGGTCTGAACACTAACGATGAGGGGAAATTAGAAAGCCCGTACCAAGTG
CCGACAGGCGAGAATGAGCGCCAGAGATCAGTTGAACATTTAGATGGCTT
GCTTAACGAGCTCGATGTAGTTTACAAGAAAACAAAAGAACAAAAAATGA
GTGAATATTACAAAAGAGTTTTACAAACACCTGTTGAGAAGGAACAAAAG
AACAATAATGTAGGTGAAAAAGAAACATCCATAACTGTTGCTATATTTGC
TGAGAAAGATGGCAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTG
GAAGGTTGGACGAGAAATGAATTTCAAATCAAAATATCTCAAGTCAGAGA
TTTACACTATAGATATGCAAAAGAACAAAGCGATCGTAGTGAAGATGATT
GAATACCGTCGAGAATATCGAAGAAATGCTATCACTGAGGATACTTATGA
CAATATTTTCAATGAAGATCCAACATACGAAGGTTTTTCAAGATGTCATC
ATCACCATTAACTATCATTATGGATACCACCCAACAACCAACAACACTTG
CTTCAACGACTCATCCTTCTGCAGCATTGGAGGGCGACCGATCACGTGAC
AATCAGCATGAAAAAGAAAGACAATACATTTCATTGATTGGTTGCTTGAT
CACTGTCACTGTCCTTATGATCCTCTTCTGTTTCATATTCTGGAAAAGGA
AGAGTGCACAGACGGGGTCAGTTTCACATTCGATCTTGACAAATACGAAA
TGAACGGTAGAGAAGATGTTAAAGAAAAAACAACCAATAAATCTGCCGAC
CAAGTCGACCAGAGTGAATTTGCAGATTACCAGATTTCAAAAAAGACCAA
AAGAAATCCATACGAGAACGTCGAAATTGCAGTTCGTTCGAAGACAGACG
AGATCAAACGCCGACATGACGTCGTCAAAGAGATTGAAGTAGTACGAACT
TTTTCCAGCGGCAAACTTCCTCGACGGAACAACCTTCAAACGAAAATACC
TGAATTCACATGCTCTGATCCTCATTATGCAGTCCCTGTCGTAACACCAA
AAACTGATATCCAACCTTTTGAAGCAGGTCTGAACACTAACGATGAGGGG
AAATTAGAAAGCCCGTACCAAGTGCCGACAGGCGAGAATGAGCGCCAGAG
ATCAGTTGAACATTTAGATGGCTTGCTTAACGAGCTCGATGTAGTTTACA
AGAAAACAAAAGAACAAAAAATGAGTGAATATTACAAAAGAGTTTTACAA
ACACCTGTTGAGAAGGAACAAAAGAACAATAATGTAGGTGAAAAAGAAAC
ATCCATAACTGTTGCTATATTTGCTGAGAAAGATGGCAAAATGTATTTTC
CACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGAATTTCA
AATCAAAATATCTCAAGTCAGAGATTTACACTATAGATATGCAAAAGAAC
AAAGCGATCGTAGTGAAGATGATTGAATACCGTCGAGAATATCGAAGAAA
TGCTATCACTGAGGATACTTATGACAATATTTTCAATGAAGATCCAACAT
ACGAAGGTTTTTCAAGATGTCATCATCACCATTAACTATCATTATGGATA
CCACCCAACAACCAACAACACTTGCTTCAACGACTCATCCTTCTGCAGCA
TTGGAGGGCGACCGATCACGTGACAATCAGCATGAAAAAGAAAGACAATA
CATTTCATTGATTGGTTGCTTGATCACTGTCACTGTCCTTATGATCCTCT
TCTGTTTCATATTCTGGAAAAGGAAGAGTGCACAGACGGGGTCAGTTTCA
CATTCGATCTTGACAAATACGAAATGAACGGTAGAGAAGATGTTAAAGAA
AAAACAACCAATAAATCTGCCGACCAAGTCGACCAGAGTGAATTTGCAGA
TTACCAGATTTCAAAAAAGACCAAAAGAAATCCATACGAGAACGTCGAAA
TTGCAGTTCGTTCGAAGACAGACGAGATCAAACGCCGACATGACGTCGTC
AAAGAGATTGAAGTAGTACGAACTTTTTCCAGCGGCAAACTTCCTCGACG
GAACAACCTTCAAACGAAAATACCTGAATTCACATGCTCTGATCCTCATT
ATGCAGTCCCTGTCGTAACACCAAAAACTGATATCCAACCTTTTGAAGCA
GGTCTGAACACTAACGATGAGGGGAAATTAGAAAGCCCGTACCAAGTGCC
GACAGGCGAGAATGAGCGCCAGAGATCAGTTGAACATTTAGATGGCTTGC
TTAACGAGCTCGATGTAGTTTACAAGAAAACAAAAGAACAAAAAATGAGT
GAATATTACAAAAGAGTTTTACAAACACCTGTTGAGAAGGAACAAAAGAA
CAATAATGTAGGTGAAAAAGAAACATCCATAACTGTTGCTATATTTGCTG
AGAAAGATGGCAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTGGA
AGGTTGGACGAGAAATGAATTTCAAATCAAAATATCTCAAGTCAGAGATT
TACACTATAGATATGCAAAAGAACAAAGCGATCGTAGTGAAGATGATTGA
ATACCGTCGAGAATATCGAAGAAATGCTATCACTGAGGATACTTATGACA
ATATTTTCAATGAAGATCCAACATACGAAGGTTTTTCAAGATGTCATCAT
CACCATTAACTATCATTATGGATACCACCCAACAACCAACAACACTTGCT
TCAACGACTCATCCTTCTGCAGCATTGGAGGGCGACCGATCACGTGACAA
TCAGCATGAAAAAGAAAGACAATACATTTCATTGATTGGTTGCTTGATCA
CTGTCACTGTCCTTATGATCCTCTTCTGTTTCATATTCTGGAAAAGGAAG
AGTGCACAGACGGGGTCAGTTTCACATTCGATCTTGACAAATACGAAATG
AACGGTAGAGAAGATGTTAAAGAAAAAACAACCAATAAATCTGCCGACCA
AGTCGACCAGAGTGAATTTGCAGATTACCAGATTTCAAAAAAGACCAAAA
GAAATCCATACGAGAACGTCGAAATTGCAGTTCGTTCGAAGACAGACGAG
ATCAAACGCCGACATGACGTCGTCAAAGAGATTGAAGTAGTACGAACTTT
TTCCAGCGGCAAACTTCCTCGACGGAACAACCTTCAAACGAAAATACCTG
AATTCACATGCTCTGATCCTCATTATGCAGTCCCTGTCGTAACACCAAAA
ACTGATATCCAACCTTTTGAAGCAGGTCTGAACACTAACGATGAGGGGAA
ATTAGAAAGCCCGTACCAAGTGCCGACAGGCGAGAATGAGCGCCAGAGAT
CAGTTGAACATTTAGATGGCTTGCTTAACGAGCTCGATGTAGTTTACAAG
AAAACAAAAGAACAAAAAATGAGTGAATATTACAAAAGAGTTTTACAAAC
ACCTGTTGAGAAGGAACAAAAGAACAATAATGTAGGTGAAAAAGAAACAT
CCATAACTGTTGCTATATTTGCTGAGAAAGATGGCAAAATGTATTTTCCA
CCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGAATTTCAAA
TCAAAATATCTCAAGTCAGAGATTTACACTATAGATATGCAAAAGAACAA
AGCGATCGTAGTGAAGATGATTGAATACCGTCGAGAATATCGAAGAAATG
CTATCACTGAGGATACTTATGACAATATTTTCAATGAAGATCCAACATAC
GAAGGTTTTTCAAGATGTCATCATCACCATTAACTATCATTATGGATACC
ACCCAACAACCAACAACACTTGCTTCAACGACTCATCCTTCTGCAGCATT
GGAGGGCGACCGATCACGTGACAATCAGCATGAAAAAGAAAGACAATACA
TTTCATTGATTGGTTGCTTGATCACTGTCACTGTCCTTATGATCCTCTTC
TGTTTCATATTCTGGAAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12647MSTRG.12647Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12647.3.p1MSTRG.12647.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12647.3.p1.exon7MSTRG.12647.3.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12647.3.p1.exon6MSTRG.12647.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12647.3.p1.exon5MSTRG.12647.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12647.3.p1.exon4MSTRG.12647.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12647.3.p1.exon3MSTRG.12647.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12647.3.p1.exon2MSTRG.12647.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12647.3.p1.exon1MSTRG.12647.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000096_pilongenomesc0000096_pilon:678666..683373 -