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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000096_pilon:649499..658655+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12644.1.p1 ID=MSTRG.12644.1.p1|Name=MSTRG.12644.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9157bp|location=Sequence derived from alignment at sc0000096_pilon:649499..658655+ (Clytia hemisphaerica_ch_hm2_pilon)
tagatagaaaaaaaatttgcaaagtttTCTATCTAAACACAacatttata
tatattttttgcttGAATTGTTGAAGGTCTTGTTATTTTTATGATAAGGG
ttgaatttattaaaataataagaaacaaggaaaaaaatatatgtataCGT
AAAATTAGATATTATTCTTTGTGTTATGGCTTTCATCGCGACTGAGGAAT
ATATATCagagtttttttcatttagttGTTAGAACGTTCAGTAGTGGTTA
CTATTAGCTTTGTATAAGGAGCGAGTGGAAATTTTGAGGCAATCTTGCGA
TTTTATTAATGATATCGATTCCAGGATTTTGACGCGATAATCAAGTGATC
AAAGGTGTTAACTAGAGCAAGGGTGTATCCCCGGGTGTGTCAATTTAAAA
CAGGGGTATATCATTATTTGAAACAGTAGTTATATAgtttgtgagacagg
ggtgttctgtACTTGAGACAGGGATATACCGTTCTTGAAACAGGGGTGTT
TGTTTGATATCGTTTCTGAAACAGGAtatgtattatttttattatacttt
TCGAAACGGGGCTGCATCATATTTTGAAACAGGGGCGTAACGTTTTCTGA
AATTTACCGGTATAGGGGTGTTAAACTTTAGTCtgtgatacacgtttttt
tatttttaagaaactagttttaccaagcagcctcaatgtttcttaagaaa
tcggccttttgagccttaaatgtttcttacatgtttctaaactttttgac
ataatcagccttataaaaggctggattggaaggttcttaaaaaaaaaacg
aattaaagaatgtttttttctcattctcagcctcagcatgtttcttagat
gtttcttagtttctaggtattctgagcctcatgtttcttaaaagtgtgtt
tcttaaaaaaaaaaaaacgtgtattgtctCATAAGTTTCAATTACATTTT
TCAGTATCAAAAACACACTTAATACACCCAACAATAACCACCACGAAGGA
CAAGTATATTTCAGACGTTTGTGGAAGCAACTGTTCTTAATGAAAGTGCT
CATGGAGAACAATGGATCGGGCGATGAAAATAACGGATCTAAACGTAAAC
GGTAAAGCTTATTTATTTATCTTCAaactatacgtttttttataagaaca
taagacttcgatggccaaaattctaagaacaagttaagaacattttaagg
ctttgcggactctaaaacagccaatttcttaggaaagcggaccaaaatac
tcacaaaatcgtgaaattaagaacatgtcaagaacattgttaggcttaaa
actcaaaaagttaagaacatccgaaggcttcaaaatcttagcaggttctt
ataaaaaaacgtgtaaccatGTTTTACTTTGAGCTTCAAAAACATTTATA
AGATCTTTTATTTCATGCTATGTTGAAAAGATATCTCccttggaaagata
ttctcgAGGAGAATTTTCTTAAAGGTTGAAGATTTATaatatggaaaatt
ttttcaactggcgagattcaaatattcaaaaaagtgacattttcatgatt
tttgaactgatggaaggatttcattttctttttcatcttcatttttattc
ttcaGTTCTCGATTAAATATAGATCTTCTATATTTTAGACAATTCTCCTc
cgaatatctttccaacgacgGTAGGGTAGATGACGTTTTAGTATAGCATA
AATGGGTCCTGTGAAAATTGTTAAACAAGTAAAATACTCCACTTTTCTTT
TGAGGTAGTTAATTGGCCTTCGAATGGCTACATGGGCTGATTGAAATTAC
ACTCTTTATTGCTTTTAcacgaatttttttacaagtgtttttccaattca
ttatgaatattgttaacttttttgggaaaaatcatcctgaaatattctta
cggtagtCTTAGGTTTAGATCTAAACACAGCCAAAATCTAGCATGATACA
TAGctcaagctaaaatttggcatttttatgGAACCTTTAAGCATTGTAAA
ATTCTCTGAAATGGCATTCTAAGGTCAAAACTCCATGATGCCGTTGTACT
ATAGCTATTATCAAAGATTTAAGCCAAAGAAGGGACTTAAACTTAAAGTA
TGACCGTATGAAACCCTGAATGAAAATATCACATCCTTAAATCTGCCAAT
TTCTTTGTTTATGAGCGGCAAATGTTATATTGATGATAATAGCATTATTA
TCAATATCGCGGTTAAAGCGTGTGGGGAAAAGCATACAGATTGCACGACT
TTTGAAGTACCTCTAATTTATAGTGTCTCCACCTGAACGTTGTAGAGAAT
CTTCAAGCTTTCAAAGGCATGTAAGAGTGAAGCCTTAAGACATTTGCCGC
ATTTCGATTGACAGATTTAAAATctatcattttgttttgttttctgctgg
taaattttactttcaatctagcgCTTGTATGAAAAGCATGAGAGCTGCAC
AAAGGTGGCTTCAAAGCATACATTGGTTGTTCGACTCTAGCCTACAGCTA
TAAATACTCGATCTTATTAGTGGCTATCCTCACAGTAAATCCCACAAATT
TCTGTAaggtccgaagggctagatgttgtgctttaagcacttccaagcaa
aaaaaaagtgaatatcgcaaaaaatattgctgctattgtttccGAAAACC
TGCTAAGCTTCTTATTgttcaagcgctgaaattctattgtaaagtcACGT
gtctcggcacacttttcagccaaagcacgacatctagccctccgggcttt
ataaatctatggtacATCCTTCTCCATTTTGTAAAAAGGCTATAGTAGCT
ACCACTTAAGATTATGAGGAGTAACTTTGTGTGTGGCCACCGATAGCGTC
CTTCATTCAAACGAAACTAGTGGAGGGTTGGGAATCTACTTTATATGCCT
CAATGACTCATCCTTGGGAAGTTCGGTGCATAAGAAACGGAAGAAGCTGA
TTGTTTTGAAATGTTAATCTTCTCTATATAATCCCATTCTGAAAGAATTC
GAAATCCTCATATAATTagtgaaaaatttttgacaGCTCTCTTCTTCTGA
CAATAATTCGATATTAATGATGATGTTGTTCCATAAAGTACTGGTGGCAA
TCAATCCGTCAATCAACTGGTTTAAACAGTAAAAGTTTAAAACGAGTCAA
TATCAAGGCATATAGTCTCAATATTCCTCCTTAGACAAAAGTCAGCAGTC
ATCTAACAAGGATACCTTTGATTGAACTCAGTTGGCAAATCGTAGTGGTT
ATCATCATTGACTCCCGTCTGGGAGGCCCGAGTTCAAGATTCACTTGtca
agtgaatataccttcgcccgggtcaattCATGCCATccgaggggaattgg
gtaccattactctgatacgaCACTGGGCGAGACAGACATTGTGACATGCC
atggcactcataaggttcaGCTTCGCCCAGTGTCGTTTGAGTGttatggt
atacgccatggcttgtcagctcgcgtctgtcaagtcgtagtgtctgtcag
cgccgtgattctCCTGATACTCCTTCATGGGTAGaacccatcccgaatgc
attcggagggctcatatctatttatctatctatctatctggTTGCCAAAT
CAAACAGTTCAACTATTTCAATGAGGATATGATTCTCCAGAAATCTTCTG
AGAGTCTTAGCGTTCTGTTGTACTGTATAATGTGCTTCCTGAAGGCGAAA
TGTAATGGAAAATTGCGTAGAATGGCAGAGCTGGATAATTCCGCATGCAA
TGTTGCATTTTCCCTGATTTTCGGTTTGGTGGCCTTTCATAACTTAAATC
ACAAGCTTCAGTATTTACCAGTATTTACCATTACTGACCAGTTTTTCCGA
TTTGATATTTTGGTGTTAAAAGGTTGAATTCCCGGTATTCTGATACTCgt
tggaacatttttgaccGGTATTGAGAAACCTTTGGTCGGTGCGCCagtat
tttcatgaaaaaaaaattaccagtaTTCATGTATTTTGTAACCTCGgaag
cccccccccactgTGTAGTATAGCAGCGCACTTTTGTGGAAGCGTTGTGA
GAAACCGCAACTTTGTGGAATATTGCAGTGCTGCGGAACTATGCAGTTTA
CCGAGAAATAGGAAGAGTTTGAGCCTGGAAATGgatttaaagctgtttaa
aacGGTATTTGACATTTTAGTTCCCGAGAATAGAccttattggagttttt
gatgtttttaaaacagcgatgcattgtgggattgtttcgggggtattaaa
ATAGAATTCCGCCCtcaaggaattcctaagagatttctattgcaATAccc
tcgaaacaatcccacaatgcatcacttttttagaaaatcaaaaaactccg
ataagatctattctcCAGTACCACGAGGATGCAAACCGTACGACGCAATT
AACTCTTGTCTTAATGATGATCCTATCTTAATGAGACAGATGACATGTTT
AATTACGATGCTGACACTAATTGCTTTTAATGTGCCCCTTTTCTACTTTG
TTTCAAAAGAAATACAGGAAAAAGTAATTAAGATTTCTTTATTGGCCCAT
TATTGTCCATTTAATTACCAAAGTGTTCCTAGTGTGGTTGTTTGCAAGTA
AATAGCTTTTCAGCTgtcaattgaatttcaattttaattgtGCAGTATGC
GgtgttttttgaagttttctaAATCATAATCATCGTATGgaacgagatgg
agttttttacaagctcttatttgatttggttggtcgttaaccagtaataa
aacaagtTTGATACttttaaagaacgcgtcatttttattacttcaaatga
ccaatcatcaaagtatcttatataaaaactccatctcatctgcatCATAT
ACAGTATTTAAACTCTTTCGCCCTGCCACTTTTTGAGGTTATGAGCAGCC
ATAGCAATTCGGGaaattgcatagatccgcaACGTTGCGTAATTTCGCAT
TTTTTGCGTTGTCATATTCCGCAGCGTTGGGAAATTCCGCAGCTTTATCG
CTGCATAATTTCGCAGCCATGGCCTATGGACCAAAACCGGAATCGGAGGG
TTTTGACCGGGGTTCCAAAATAATGTGCATTTGAAGAACAacccaaaagg
aaacttttcaacctagcattttaatttcctacctagcGATTATTCACAAT
CATTCTTGGAAGAAATGCTACTTTGTTCAAATATGCCAGATTTTGCCTAA
TTTTGCTTCTATTTGCGAAAATTGGTCGTCATAGATGGTGTTCATAATCG
CACACTTCCATTGGGGATGTTGCGAAAAATTGCAGTGCACGCTGAGGGAA
TCGTTGCAAAAAACGCAACATTGCAGAATTTTGCAACGTtgcggatctat
gcaatttCCCGAAGTGATAGTAACGGACACATTGGTTCAAATTTGTGTCC
AATGTTTTCGCTTTTAAGTAATTAAAAGTACTTGAAAAACTTCCAACCTT
ATTTTGAAGCAGattgagagaggaaattttgaatttcgtgaTTGAGAGAC
TTtagagggtgtgaaaaagggaccaaCACCCATTTTTTCTAAGTACCTcc
cccccAACCGGGTATACTAGCAACACTACGTGATAATAATTTAAGGGCAT
TACTTGCCTTGGAATGTAGGCAAAGGCCCAAGGCCCTAGTGTACTCGTAA
AACAGTACGAACTCAATATTAAATTCTTATAGAAGAAAgacatcaaaaat
tattttcagaaaCATAAAAACCACATAATAATTATCCCGTCGGTTCTCAA
TACTAAAaacatctttaaaattttttaattatagCCTTTTAAATTTAACT
GCATTGAATGTTTCTTCACAGTGAAGTATAGTTTAAATCGTCGTCAGCTC
TTTTATACTTTGTCGCAGAATTTAAACGTAGCTGAAGCTGTAtttttggt
tttctgatttttttagttttgtttatttttcctGACTTTATGTGGCGGTA
AGTGATTTATTTTCGTCActattcatttgaaaaaaatggtgtAAATTATG
AAAGTTGAATCTCCTATGTAGGgtttgaagccacttatttcctacaTTAA
TTGCGCGGCCCGCTGGATTGGAAGTAACATCTGATAGACTTAAACAAGGT
AGCAATTCAACTTTTAACTACGGGTTTCTCGATTCTCTTGCCACACATTT
AAAAGGTCCAGTGAAGATAAGTATTGCTTTGTGTAGGGATATTtgttttg
gatgtttttgaACAATGTTGGGTGACACTAATGTTTTTAATAAATATCCA
AAGACGAAATCTTTAGTCTATTGTTCATGTGGAGGATGGGATCCTACCAG
atcagttttgaaaaagaaacgaaaatttTACCAATACATGCAACTTATTC
TCCAGCCTCTTCTCTACGTATTATCGGCTTTTTGATGCTCACTCATAGTA
CCAGATATTCTCTAGCATCCATCAGTAAAATGCAAATAAAGCCTGGGGTA
CACGGGGACAAGACAGTTTATTCGCTTCTATCTAACATAATGTGGAGTTT
TTATAACACGAACACACAAGGGGAccaaaaattgttcgagttatagaggt
tcgagttagagAGACTGTAGCAAATAACTTTCAACTTCGTTCCATAGGTT
TACCATGATTCAACGTAGTTCGCCCACCATTCGTCGTGAAGAATCAATGG
AAGAATATTCACCGGGTGAGTACAACCACGACACTTCACCTCCACAACAA
ATCGCTTACGAAAGTATGTCTTCTAAAGAAACCATGCACGCACAACCCCC
AATaaaaaaaTCACGTGGTCGACCAACTAAACAGTATTGGACACACGAGT
GGAGTGACCACGCAACAGAAGCACTGATTGAACTTTGGGgtgaaaaagaa
gaactttacaACAAACAACATCCACTCTTCTACGTTAAAGAGAACAAAGA
TAAAGCTGTAGAAGAAATCCGTGACTCTTTACGTGAACGAGGTTTTGATG
TCACCTGCAATAATATCTTATCAAAGTTTCAATCGCTACGGACTTATTTT
TGTACACAGCGTACGAAACATATGGCAACGCGGCGTGCTAACGGAATGTC
GTATCTACCAGACGACGGTAGTGAGTGTAAATGGCGTTTTTATAAAAGTT
TAATGTTTTTGGATGATAATATGAAGCCGAGAGAAAGTCATCGAAAAATG
GAGCTTATAAATGCTGAGTATAGCGCACCGAGTTTCACGTCATCTAACGA
TTTGATGACAATGCGATCTCATTCTTATCCAAATCATCACCATCAACAAC
CCCCTGTCGAATACATAAATCCGCACGATCAAAGCCTAGAAATGAATGGT
TATCACGGGGGTTCGACATCATCTTCTTCATCAACAAACCATGTAAACAA
ATCACATGATCTCTCATTCGAAGAAAATCAAGGGCCACCGTCAGGTGGTA
GGGACTATACGGTAACATCTTCCTACCAGGAAGCGGCTGCCTCGTCTACC
TCAGATAAGAGACTATCCTCTTCAACGAGCGGTAGTTATGGTAACACACA
CAATAAACATGAGGACTATATTTTTGGTGAATTAGTAGGCAATATGGTGC
ATCAGTTACCAGCAGGTAAACACAAAGACTTGGTCAAACTTGAGATTCAA
CAGTTAATCATCAAAGCGAAATATGCATCCAAAAATAATGAAGAGGATGA
AACTGAAATCAAATCGGAATTAAATGATGcttaaattttttatattttct
ttttcctatcctgatgccttttgtttatagaattatttttGTAGCTAtac
ttgatatgcgtaagtcaagatgacgtcatatttttaacggaagcacccga
aaaaagccggattttgacctccgtgtttctatttttagtcaCAAATGCGA
CAAGATAACAATACACTGGTTGAAAAATTATatcagtgcagtcaaaacat
gtgattactcgaaaaagttcacttgattttattcccatgttaattgcttt
acaacttacagatgataactttattagtatcaataaattcgaaccaatca
gaaataaatgtcatgtaacaagcacatatcgagaaaagcgtgatttgtct
tcagactttaatctCGCAACCTGTGTATTGATCTCTCACTAGCTAAGATG
TAAtttcgtacacgttttttttattagtacacctaaaatttgactgagcc
ttgtttatttttttagcagCTTTCagcataaaatgttcttaaatgcgttc
ttaatttttcagactactctaaatcgacaatatcatgcaaaatgaAGAGC
ACTTAAacttggtaaaatttggacaatatttgactctcaaatttagaaaa
tccatctcTAAGTTCGACTAAAACTGCTTCAAAAGAGGAAGAAATTGTAG
TCTCTTGccctttttttccaaactgaggctgggcatgttcttacgatgtt
cttaattattCGACGAATTTCcagcatgttcttataaactgggttctaat
aaaaaaaataaaaacgtgtactcaTACAGAAAGACACTTGACCATTTGTT
TGATCTTACCTTACTGATGGACGTGGTACAATAAAAACTTTGGTGAGTCA
TaaaaaaaTGAACTGGGACTGGGTGCGAGTTTGGTCAAGATGTCTAAAAG
AGCATAGATAGGAGAGAATAGATTTGTAAAgtttgaattattttcttatA
CTGCTCCATCTTTTTTCAGATAAGTTTCCGgacactacacgcttttttct
ataagaatatcagggtgaaaattgtctaaagtctaaaaaaagtaagaata
cgttaagaatatttcaccctgaATTTGGGCAATTTcgtaagaatacttga
ccctcatccaaagtacactattcttataaaaaaaagcgtgtatagttcca
ttgttcaatttttttaatcttatGCTTTATATCCTTGATATCATTCGGAC
TCCCGGGGGGTACTAAGGGTGGCAAGCtgacgggggggggggtgtgctgc
ccgattttcgaacattggacccttaccgggactaaaaaggaaaaaaaaga
aagattttgggaattttacgacccttagcgggacaactttgaccaatttt
gaccaaatttcgattattcagggggtaaaaagttgaaactttcctatttt
tccgacccttagtgggactgaaattttattttctgatttttccgaccctt
agcgtga Coding sequence (CDS) from alignment at sc0000096_pilon:649499..658655+ >MSTRG.12644.1.p1 ID=MSTRG.12644.1.p1|Name=MSTRG.12644.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2298bp|location=Sequence derived from alignment at sc0000096_pilon:649499..658655+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGTGCTCATGGAGAACAATGGATCGGGCGATGAAAATAACGGATC
TAAACGTAAACGGTTTACCATGATTCAACGTAGTTCGCCCACCATTCGTC
GTGAAGAATCAATGGAAGAATATTCACCGGGTGAGTACAACCACGACACT
TCACCTCCACAACAAATCGCTTACGAAAGTATGTCTTCTAAAGAAACCAT
GCACGCACAACCCCCAATaaaaaaaTCACGTGGTCGACCAACTAAACAGT
ATTGGACACACGAGTGGAGTGACCACGCAACAGAAGCACTGATTGAACTT
TGGGgtgaaaaagaagaactttacaACAAACAACATCCACTCTTCTACGT
TAAAGAGAACAAAGATAAAGCTGTAGAAGAAATCCGTGACTCTTTACGTG
AACGAGGTTTTGATGTCACCTGCAATAATATCTTATCAAAGTTTCAATCG
CTACGGACTTATTTTTGTACACAGCGTACGAAACATATGGCAACGCGGCG
TGCTAACGGAATGTCGTATCTACCAGACGACGGTAGTGAGTGTAAATGGC
GTTTTTATAAAAGTTTAATGTTTTTGGATGATAATATGAAGCCGAGAGAA
AGTCATCGAAAAATGGAGCTTATAAATGCTGAGTATAGCGCACCGAGTTT
CACGTCATCTAACGATTTGATGACAATGCGATCTCATTCTTATCCAAATC
ATCACCATCAACAACCCCCTGTCGAATACATAAATCCGCACGATCAAAGC
CTAGAAATGAATGGTTATCACGGGGGTTCGACATCATCTTCTTCATCAAC
AAACCATGTAAACAAATCACATGATCTCTCATTCGAAGAAAATCAAGGGC
CACCGTCAGGTGGTAGGGACTATACGGTAACATCTTCCTACCAGGAAGCG
GCTGCCTCGTCTACCTCAGATAAGAGACTATCCTCTTCAACGAGCGGTAG
TTATGGTAACACACACAATAAACATGAGGACTATATTTTTGGTGAATTAG
TAGGCAATATGGTGCATCAGTTACCAGCAGGTAAACACAAAGACTTGGTC
AAACTTGAGATTCAACAGTTAATCATCAAAGCGAAATATGCATCCAAAAA
TAATGAAGAGGATGAAACTGAAATCAAATCGGAATTAAATGATGcttaaA
TGAAAGTGCTCATGGAGAACAATGGATCGGGCGATGAAAATAACGGATCT
AAACGTAAACGGTTTACCATGATTCAACGTAGTTCGCCCACCATTCGTCG
TGAAGAATCAATGGAAGAATATTCACCGGGTGAGTACAACCACGACACTT
CACCTCCACAACAAATCGCTTACGAAAGTATGTCTTCTAAAGAAACCATG
CACGCACAACCCCCAATaaaaaaaTCACGTGGTCGACCAACTAAACAGTA
TTGGACACACGAGTGGAGTGACCACGCAACAGAAGCACTGATTGAACTTT
GGGgtgaaaaagaagaactttacaACAAACAACATCCACTCTTCTACGTT
AAAGAGAACAAAGATAAAGCTGTAGAAGAAATCCGTGACTCTTTACGTGA
ACGAGGTTTTGATGTCACCTGCAATAATATCTTATCAAAGTTTCAATCGC
TACGGACTTATTTTTGTACACAGCGTACGAAACATATGGCAACGCGGCGT
GCTAACGGAATGTCGTATCTACCAGACGACGGTAGTGAGTGTAAATGGCG
TTTTTATAAAAGTTTAATGTTTTTGGATGATAATATGAAGCCGAGAGAAA
GTCATCGAAAAATGGAGCTTATAAATGCTGAGTATAGCGCACCGAGTTTC
ACGTCATCTAACGATTTGATGACAATGCGATCTCATTCTTATCCAAATCA
TCACCATCAACAACCCCCTGTCGAATACATAAATCCGCACGATCAAAGCC
TAGAAATGAATGGTTATCACGGGGGTTCGACATCATCTTCTTCATCAACA
AACCATGTAAACAAATCACATGATCTCTCATTCGAAGAAAATCAAGGGCC
ACCGTCAGGTGGTAGGGACTATACGGTAACATCTTCCTACCAGGAAGCGG
CTGCCTCGTCTACCTCAGATAAGAGACTATCCTCTTCAACGAGCGGTAGT
TATGGTAACACACACAATAAACATGAGGACTATATTTTTGGTGAATTAGT
AGGCAATATGGTGCATCAGTTACCAGCAGGTAAACACAAAGACTTGGTCA
AACTTGAGATTCAACAGTTAATCATCAAAGCGAAATATGCATCCAAAAAT
AATGAAGAGGATGAAACTGAAATCAAATCGGAATTAAATGATGcttaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000096_pilon | genome | sc0000096_pilon:649499..658655 + |
|
