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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000096_pilon:242171..247879+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12620.1.p1 ID=MSTRG.12620.1.p1|Name=MSTRG.12620.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5709bp|location=Sequence derived from alignment at sc0000096_pilon:242171..247879+ (Clytia hemisphaerica_ch_hm2_pilon)
tgactagCGAactccatgatggtgatattcttagcatattctcaattttt
tggccattttcatcatggacattcttataaagtatattcttatgaaaaaa
agcgtgtagtctgCCTCGCAGACCTAtacaagctggcacacaacgttgtt
taaatgttaatctaacgttatatggacgttatgaacgttagataaacgtc
gaaacaacgttgtgtgccggctgggtatCCTATATAACTTCCCTTTACGA
GAAAAATGAAGTTTCTTTTAAAAAGGCAGCTTTTGTTGGGTGCAAGAAAT
ATTATGAGTAATGGGGATTATGAAACGGACAAATTCAACTTTATTTAGAG
ATGAATACATCACCATTCATTGTATTTCACAACCTgcaaaaaacaaaata
tgatGAGATTATTTTTGCAGTATGTTTTTATATATTCATAATGAGATTCG
TGGAAATCCCAAACTGAGAAAGTGCACGTAAAGGTGCTGAAATCATCGAT
TATATGTAATTAAGAAGCCTTGTTAAATAAGAGAGAGACATATATAAGTC
TCTTACTAATCGACACGTTAGGTCAGCTAAGGTGAAAGTACTGACAAGTT
GACGATAAGAGTCATAAATAAGTATTCAAACAAGTGAAAATTTTGTTAAA
CGCACAAGGTATGTAGAATTGAACTTAATGTAATTAatgtaatatatttt
ttaattttttgtgtcaGAATGGAATTTGAGTTTGATGCCTGCATGCCTGA
AAGtggtctgtaaatttaaaaGTAACTGGCAGATAATACTAATTAATCAG
ATAAATCTTcgcaaaaaatttaattttgccaGTCAGAAATAAACAATATT
TTCTGGATTTTATCGAGGTTATGAAAAGCTTCAAATAGATTCAATTTAGA
ttgtggatttaattttgcgcgATCAGCATGCTTACGCAATTTCGcgattt
atttaattttcgcgaaagtttgtccGAATAAAAGGCTAAGCATCTGATTA
TGTAGTTAAAAAAGATATTAAGTTAAGTCTTAGAaggaaacaaaactttt
tattcttttaggGTTTCTAAATTCACTTCATCAtgtctgaaaaaaatgaa
aaagaagaactacaaaaagctaaagaaaactttgcaaaagaacaaaaatt
gatgaaagaacTCATAGTCAAGAGTGAAGAGCACGAGCAATCGGTTACCG
TAAAAACTGACCGTATAAAAACAACAGGACGTCTATACGAAGATACCATT
ACCGAGGACCTACATTCAACCGCTGGAAATGGGGATATAGAAACTCTGAA
ATTTCTGCTCAAGAAAGGTCTTTATGTCAATTCGAAGGATATTAATGGAG
CCACGCCCCTTTTTTGTGCGTGTAAAGAGAACCAGTTACATGCAGCTGTT
TTGTTGATTGGACACGGAGCCAATGTGAATAGTAGTTGTAATGAAGGTAT
GTTTACAAACTCGTATCCAGGTCCTTAgctcactttttgataattttgat
atcGCTCACAAAAGAATTGTATCACGTTCATCAGTAAAATGAAAAAGTGG
TGAAAGTGGTTCTGGATACAAGATTGGATATGGGtatgtttattgatttt
ctagGTTTTTAGGAGGGGTGGTTATTGTTTTAGTacactcttaaaaaaaa
agaacagtaaGGCTCAAATCCGTAAAAAATAAAGATAGTATTAAGGAGCA
GTCAGGGGAAGCTGGGGGAAATTCATACCGTGGCTGAAGAGGACCTTTTA
GTTTGTATTTAGTTTGCGTTGTAACGCGCGGCCGCGCTAATTATACGCGG
CCGCGTGTTACAGTATGCGGCCGCGTGTTACAATACGCGGCCgcgtattt
ttttgaaaacgaaaacatGCGGCCGCGTCTTTTTTCGAAAACATGCGGCC
GCGTTATCTGATGCGGCCGCGTCTTTTTTCGAAAACACGCGGCCGGGGAA
TAAAACCTGCGGCCGCGTGTTTTTGTCAAGAAAAACACGCGGCCGCGCGT
TATAAACATGCGGCCGgatctttctttgatttttgaagccggaactttct
aaaattcGCCGGAACAGCaaattttcgccggaaaaatggtatttcttgaa
tttctcgagctgtactttatattttttcatgaaattttgcacactgatgc
aaaatggcaatacctaaaatgtgacagagcccgattttcaataaacattg
TTTATACATTGTACATTGACTTTGTTTGAATCTCCGATATGgttaataat
agtaatagcgttaagttttcgttTGTCGTTGTTCATTAATTATGCCCTTG
CAgattgattattagccctctagtgctATTTGCGCTCTCCGCTTCGGAGA
CCTACCTTTGCCTGAAAActctcaaagaaaaaagaagataagaggGGTAT
GAATGTTCGATCTGAGTATAAATGTGTTTGTGCTTAGACTAGCTTTCAAT
CATTAACTTGGCTGGGAAGCCAACTCCCTGCGGAGAGATAATATGCGAAC
GGAGCGCGGGAGATTGTTGAAATGACTTCCTCGGAATTAACACGAGCTAA
ATTCTTAGCTCTAAAAATCATGAATACGGGGACGGAAAATGTTTCAGGCT
AGTTCACTGGATaaaaaaaGGTGGGTGAAAACGTTAGTTTATCTGGTGGC
agaaattttatattatattatattacatAATTGGTTACTCGAAACAATAA
AGATGACACGTTCTTCAGAAAATGGTAAATATCTAATAAAACGTCTCAAT
AGcaagttaacgaccaatccaatgacgAAAATTCCTGCAATATGTTCAAC
TAATATGTTCcactaaaaattttctttcgactACAGGCAATATCCTCAAG
GTTGAAAATCTTTAACTCTTTCGATTCCGCCCCAGCTAAAATCGTTCCAC
TTTTGAGGACCTTATTCAAAAAACTGGCACACTGAAAAGATAGCCCTTGA
AATGAGCTTTCCAACAAACCCAAACATGGCCTAATTTGCTTTAGAGGACG
TCTATCAAAAtgatcctgcattactaaaaataaacaaacaatagAAAAAC
GACAATactgacgagttaggctaactaaagacaaaaagaacgacaactTT
CGCACTCAGATCATCAAATTGAAGCCCAGTGTCACTGCATACTGTGTCTG
GGTAAGTTAACTTTCTAGATTTTTGAGGGAGTAATTTGGGTTTCCAcaac
aagaaaaatgaaattacctgagtttaaaatcgattgggtcggtttaaaaC
GCGATATAGGTCGAAacaattaaatgaaatttaaatgtCAATTGGTCAAC
TTTTATTGCATGTGTCATTAAAAGCTAAAAATAGTTATAAACTTTTTGTA
AATTAATGTCCGAAGAGAATTTAACCCTCTTTTGCACATGACATTAAGGA
ATTTGCACTTCACGTAGAGGCTTTTCGAAGAAACGCTTGCATACGAAATC
TATCTAAACGTGACAAACCCTACTACCATCAGCTACATAAAGAAGTAGGG
TTTGGCACAGGCTAGGGATATATGCAATAAAAATGGTGCGTTGTTGAAAT
TTTTATactactttaaccggattaactttcgcgagataAAGTTTCGCGAG
gtcaaaaattcgcgaaatgttgcgcataaactttcgcgaattggaGCTAT
CCCAAAATTTTGCGAgataactttcgcgaatgaagaaattgattaaaaaa
caaACCACCAAAACACAGAACCCAGCCAACTCTCCCAAGGGTCTAGTTCT
CACCAGGGCCATGCAATTGTGAGGATTTGACCATTTGGAAGTGGCTCAAT
AGCTCCAGAGGTCGAGAATTAGGAATTGGAAATGGAATTGGAAAAGTTGC
AGAATTTCGcgagataaactttcgcgaatgagcaattttagatttttcgc
gagacaaattttcgcgaaaaagggcAAAATTCGCGAAACTCGCTAAAGTT
tatctcgcgaaagttaatccgattaaagtacttTCTAGATTAAGTTTAAG
TaggaatttttctaaattagaagaaagtaaaaaaaggtACAGACTTGTTT
TGTAGAAATCAATCGTTAATTAAATACATCTATTGGACCTTTGGTTTTTT
GGCTCGGTGTTTTGGAAGAGTTGGTACCAAAAAATCGGCGCTTAGCTTTA
TCATAATTAGATCTAGTGAAATGTGACATTTTCCAGACCATACTTAGGAG
GACTTAGTAATCCGATTTCCCGGAAAATACGAAAAAACCAAGCCGCTCAC
CTTTTAAACCGACCTAATCACTTTATAAACCGACCCAATCATTTTCAAAC
CTCTCACTGTTGTCTAAACTGGATATTTTTGACATGGATACCACCCCACA
CAGTGCGCTCATTGGTGGGCATCATTTTGGGTAGAATAGCAAGCGTCCGG
TTTTCCTGAGACACAAGACGCGGAAATTGTGCTTATAAAGTGATGTGCGG
GCGTggaaattattcttataaaaaaaaacgctaCGGGAATGAGAGGTTTG
TATTCAGTGAACGTAGTGAGCGTGTTGAAAACGGAGCTACAGAAATACAA
CGACTAGTTACTAGTCTACATTTTGGGAGCCGTCGTGtgtctctttttca
aaaaagacgcGGCCGCGTGTTTTTCATAAAAGATGCGGCCGCGTGTTTCT
CATAAAAGACGCGGCCGCGTGTTTTTCATAAAAGATGCGGCCGCgTgttt
tcaaaaaaagacgcgGCCGCGTGTTTTTCACGCGGCCGCATCTCATAACA
CGCGGCCGTGTATTATAACACGCGGCCGCGCATTTAAATATGCGGCCGCG
TTTCTTGAAAAATACACGCGGCCGCGTGTTAAAAGGCGCGGCCGCGCGTT
ACAACGCAAACTAAATACAAACTAAAAGGTCCTCTTCAGCCACGGTAAAT
TCATGATAATAAATCATTCGTGCTTAATAATGCTTAAAAAACTGGACCTA
GTAGTTTAAGAAACACAAACAATGAACAAAATTTcgcttttttaaaggtt
tttgtaTTGTTGACATGGCAGAAGTATCCAAAAATGACCAAGAATTCGTC
AATAATTTCATTGTTCAAATTCAACCCCATTGGCAAATACCTGGCATTTT
CTTGGGTGCTACCTTATAAAACACTACGTCGTTAATTATCATGAATTCTA
ACTTATATTTTGTCTCCTCACACGAAGGTTGTACACCACTCATGTATGCA
GCTTGGAAAGGACATGCCGAAATTGTTAGCTTACTCATCAAACATCAAGC
CGACGTGAAAGCTATTGACGACAATGAAAATACCGCCCTTCATTTCGCCG
CCCTGGGTGGTCAACAACTTGTTTGTTTATTGCTCCGAAAAGCGGGTGCT
AATAAGGGTGccaagaataaaaaaaagaaaacgccCTCTGATAATTTGGA
GACTTTTAGTCAGGAATTGAAGGTTTCGCTGACATCGAGTTTTCCAATGG
AGCCggttcattttgaaaaatcgaaaagtttGTTCGGTATGAAACGCATT
GCGCGAGAATTTTCAAAGTTGGATTAAAAACTTATGAAAAGGAGATAATG
ACATGAACATATTATTAATGGGCTTGATCGATCATATATGtatatatttt
gaaagataaatccacgcttttttataagaaccagtaaattttggctcagg
ctgaGCTGTTCTtgattcatcaaaattttcagccTTGAATGTTCTTgcga
tgttcttaa Coding sequence (CDS) from alignment at sc0000096_pilon:242171..247879+ >MSTRG.12620.1.p1 ID=MSTRG.12620.1.p1|Name=MSTRG.12620.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1428bp|location=Sequence derived from alignment at sc0000096_pilon:242171..247879+ (Clytia hemisphaerica_ch_hm2_pilon)
Atgtctgaaaaaaatgaaaaagaagaactacaaaaagctaaagaaaactt
tgcaaaagaacaaaaattgatgaaagaacTCATAGTCAAGAGTGAAGAGC
ACGAGCAATCGGTTACCGTAAAAACTGACCGTATAAAAACAACAGGACGT
CTATACGAAGATACCATTACCGAGGACCTACATTCAACCGCTGGAAATGG
GGATATAGAAACTCTGAAATTTCTGCTCAAGAAAGGTCTTTATGTCAATT
CGAAGGATATTAATGGAGCCACGCCCCTTTTTTGTGCGTGTAAAGAGAAC
CAGTTACATGCAGCTGTTTTGTTGATTGGACACGGAGCCAATGTGAATAG
TAGTTGTAATGAAGGTTGTACACCACTCATGTATGCAGCTTGGAAAGGAC
ATGCCGAAATTGTTAGCTTACTCATCAAACATCAAGCCGACGTGAAAGCT
ATTGACGACAATGAAAATACCGCCCTTCATTTCGCCGCCCTGGGTGGTCA
ACAACTTGTTTGTTTATTGCTCCGAAAAGCGGGTGCTAATAAGGGTGcca
agaataaaaaaaagaaaacgccCTCTGATAATTTGGAGACTTTTAGTCAG
GAATTGAAGGTTTCGCTGACATCGAGTTTTCCAATGGAGCCggttcattt
tgaaaaatcgaaaagtttGTTCGGTATGAAACGCATTGCGCGAGAATTTT
CAAAGTTGGATTAAAtgtctgaaaaaaatgaaaaagaagaactacaaaaa
gctaaagaaaactttgcaaaagaacaaaaattgatgaaagaacTCATAGT
CAAGAGTGAAGAGCACGAGCAATCGGTTACCGTAAAAACTGACCGTATAA
AAACAACAGGACGTCTATACGAAGATACCATTACCGAGGACCTACATTCA
ACCGCTGGAAATGGGGATATAGAAACTCTGAAATTTCTGCTCAAGAAAGG
TCTTTATGTCAATTCGAAGGATATTAATGGAGCCACGCCCCTTTTTTGTG
CGTGTAAAGAGAACCAGTTACATGCAGCTGTTTTGTTGATTGGACACGGA
GCCAATGTGAATAGTAGTTGTAATGAAGGTTGTACACCACTCATGTATGC
AGCTTGGAAAGGACATGCCGAAATTGTTAGCTTACTCATCAAACATCAAG
CCGACGTGAAAGCTATTGACGACAATGAAAATACCGCCCTTCATTTCGCC
GCCCTGGGTGGTCAACAACTTGTTTGTTTATTGCTCCGAAAAGCGGGTGC
TAATAAGGGTGccaagaataaaaaaaagaaaacgccCTCTGATAATTTGG
AGACTTTTAGTCAGGAATTGAAGGTTTCGCTGACATCGAGTTTTCCAATG
GAGCCggttcattttgaaaaatcgaaaagtttGTTCGGTATGAAACGCAT
TGCGCGAGAATTTTCAAAGTTGGATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000096_pilon | genome | sc0000096_pilon:242171..247879 + |
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