MSTRG.12619.2.p1 (mRNA) -

Overview
NameMSTRG.12619.2.p1
Unique NameMSTRG.12619.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000096_pilon:221716..223937-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12619.2.p1 ID=MSTRG.12619.2.p1|Name=MSTRG.12619.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2222bp|location=Sequence derived from alignment at sc0000096_pilon:221716..223937- (Clytia hemisphaerica_ch_hm2_pilon)
CAATAACGTAATAGTCAATTTTATGCATTACAAAAGGCAAGTCTCTTCCT
CGAACAAAAATTCCGAAGCCTCATTTCTATGTAGGAATGACGTTATCCTA
TTATTGTCTGCTTTACAAATGGTATGGCTTTTCTTTGATTGGAGATTCTA
TAGCCTCGTTTTCAAACAAGAATGACGTAAGGATTACCTCAATCAAGGAG
TATAAATTTGGGTCCTCGTACTGCTCAAATCATTACAGAGATAGATCGAT
TCTGAAGAAACTAAGAAGTCAAAAAGATAAACAAACAAATTCGAAGAAAA
GGAGGAGTTTGTATGAACAAAAAACTTTTCGAAGTTGAAGCTGAATAAAT
AATCTTTGTTGTCAGAACATTTCGCTGCATCTAAGATATTGAACGTTTTT
ATTTGGATACTAACTAAATCAAGCGACAGAAAACAAGGTAATATTTCGAC
TCTAATTTTGAATTTTGAATTGACTCCAAACTATGGGATTGAATTCAGAT
TACACCCGGGGGGGGTACTAGGACAAAATGGATTACGGGGCTGCGCCGCT
GGTCAGGGTACCTTTTTCAACCTCCACGGGTCCCAGGTAGGGTTAAAATT
CTGCATTTTAGAGGTGAAAGTGTTGACAAAATATATTCTAAACTTGTGAA
AAAAATCAAGAATAATTATTTTTGTGCATTGGAACTAATGTTCAAGCTCT
ATCAATCCTTTTACCTAAGTAATCCAAAGAAATAAAATTATGACGGATTA
TTGTCGTTTATATGTTCATGTTTTTCTAATGGTCACACTTCTCCTTTGAA
GTACAGGACCGAACAATTATCATTGATAATCATAGAACTGTTATAAATTA
CAGCTAATTGAATTGTCAAAATACAATTCCAAATTAATTTAACAATAATT
TTTAGGAGTTTTTGAAAGCTTCCAAGTCTGTTGTTGTATCATAAAGCAAC
CGTAGCACAAAGATAGTGTTAGCTTCTGCTCATCCTCTTACGAAAAAGTT
TTTTATATAAGGAATTAAGCTTATATAAGGTCTGCAAATTAGACTAAGGT
ACTAGATGCTACTATGCGCAAACCAGTGCATACCATCAAAAAGACTTGTT
GATTGTATATTCAACTGAACAAGTATGTATATGCATACAGTTAGTATATT
GAAAATTAATGTAAATGTAAATTCATGTTTTACACCATATTCATGTATAC
CGTAGATAATTTTATTTTTCGTTTGATTTCCAGATAAAATGGGAAGCGAC
AAGGATGCAAAAAAGGAGCCAACTGAAGCACAAAAACGTGCCGCGAAAGC
GAAGAAAGAAAAACAAATGAAAGGTTTCATCGCCCAATGTGTTCAACAAA
ACCAAAACGTGGAGGACGAGGAGAGACGTATCCTGTCAATATTACGTCAA
GGTGGACTCGATTATCAACCGAATCCTGATAACTTACACGAAGCGGCGAA
AAAAGGACTGGATCATCAAGTCATTGCGATGTTGAAGAAAGGATTTGGCG
TTGATACGTTAGATAAAGACGGGAATACGCCGTTGTTTTACGCAAGCGAA
AATGACCGTTTCCAAACAGCCGTTATCTTGCTTGATTATAAAGCTAACGT
AAACCATAAGTCAAAACATGGCTTCACGCCGTTAATGTACGCCGCATGGA
AAGGCCACGTCGATTTAGTATCATTACTTATAAAACACGGCGCTGACGTT
AAAGCCGTCAACGCAAACAACGATACGGCGCTACATTTCGCCGCTTTATG
TGGGTTTTCTATGGTAAGCTTGATTTTACGTCAAGCGGGAGCTGAGACAG
ACCCTAAGAACAGTAAAAAGAAGAAACCATTGGATCAAGGAGAAACATTT
GTTAAAGAACTTGAATTAACTCTGACAGAAAAAATCCCGAAGGACAGTTC
GATTGAATTTCAAGAATCGAAAAGTCTTTTTGGTATCAGAAGGGTAGCAC
GGGAAGTAGCAAAATATGCTGACTCATGAATGAAAAAAACTTTATAGATT
TTTTGATGCTACAAACTACTGTAAACTTCTTGTATGCATTGTACTACTGT
AGTATATTTTATTTTCACCCAATTTCTTGTTAATATTTATTTTTAAAATA
TTTTCGTCGGAATGCGGGTGAAGGAAAAATTTTTTTTCTTTCTATTTTTG
ATAACTTAAGATCATTGAAATGAAATTTTAAAGATAACTTTAATGTACAA
ACAGTATGAAGTAAGCCCTGAA

Coding sequence (CDS) from alignment at sc0000096_pilon:221716..223937-

>MSTRG.12619.2.p1 ID=MSTRG.12619.2.p1|Name=MSTRG.12619.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=741bp|location=Sequence derived from alignment at sc0000096_pilon:221716..223937- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAGCGACAAGGATGCAAAAAAGGAGCCAACTGAAGCACAAAAACG
TGCCGCGAAAGCGAAGAAAGAAAAACAAATGAAAGGTTTCATCGCCCAAT
GTGTTCAACAAAACCAAAACGTGGAGGACGAGGAGAGACGTATCCTGTCA
ATATTACGTCAAGGTGGACTCGATTATCAACCGAATCCTGATAACTTACA
CGAAGCGGCGAAAAAAGGACTGGATCATCAAGTCATTGCGATGTTGAAGA
AAGGATTTGGCGTTGATACGTTAGATAAAGACGGGAATACGCCGTTGTTT
TACGCAAGCGAAAATGACCGTTTCCAAACAGCCGTTATCTTGCTTGATTA
TAAAGCTAACGTAAACCATAAGTCAAAACATGGCTTCACGCCGTTAATGT
ACGCCGCATGGAAAGGCCACGTCGATTTAGTATCATTACTTATAAAACAC
GGCGCTGACGTTAAAGCCGTCAACGCAAACAACGATACGGCGCTACATTT
CGCCGCTTTATGTGGGTTTTCTATGGTAAGCTTGATTTTACGTCAAGCGG
GAGCTGAGACAGACCCTAAGAACAGTAAAAAGAAGAAACCATTGGATCAA
GGAGAAACATTTGTTAAAGAACTTGAATTAACTCTGACAGAAAAAATCCC
GAAGGACAGTTCGATTGAATTTCAAGAATCGAAAAGTCTTTTTGGTATCA
GAAGGGTAGCACGGGAAGTAGCAAAATATGCTGACTCATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12619MSTRG.12619Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12619.2.p1MSTRG.12619.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12619.2.p1.exon2MSTRG.12619.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12619.2.p1.exon1MSTRG.12619.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000096_pilongenomesc0000096_pilon:221716..223937 -