MSTRG.12616.3.p1 (mRNA) -

Overview
NameMSTRG.12616.3.p1
Unique NameMSTRG.12616.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000096_pilon:207308..214329+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12616.3.p1 ID=MSTRG.12616.3.p1|Name=MSTRG.12616.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7022bp|location=Sequence derived from alignment at sc0000096_pilon:207308..214329+ (Clytia hemisphaerica_ch_hm2_pilon)
TGACGTGGAAGAAGTCTATACATTAGAAACATGGATGGTTGGCGAACCGT
TgaagaaataccaaaaaaaagtcttaaaaaaacgtgaagAAAAGTGTCAA
CTAAAATCGTTCGCTGAAACAGCTCAGCCTATCAAACCGTCTACAGGCGC
TACAAAGAAACCTTGTTCTGGTGGAGGTGTCAAGGATTATCTGAAGAAAC
TAACGCAGTCTTTGCGACAAAATACATCATCTCCTACATTGTTTGCCAAC
CTTCACCGAAACTCAGCAATGACAACCAATAAGCCATTAGAACAAGAACG
AAAAATCGTAAGTGGGCCAACAGTCGATAAAAACCCAGACTCCACCATAG
ATAAGGATTCTAATATTGCTGTTAAAACTTCTCACATAGTTAAATCAGCC
AAACCAGAAATTGTTACTGGTCCACGCTTACACACATCGAATGACACTCT
TACCAACCGAAACATTGATAAAAGTTCGCAAGAGAATAGAAGTTCCGTTG
TTCTTCAACCTTTAGATGAAGACGCTTCTAACAAATGCCAAAATGTTACC
AAAAACATCTTATCAGATCCGCGGAGTCATAGAAAGGACAAGAATGTCGA
TAAACTCGCGAAACAACCTTCAGAAATCGATCCTTCGCAAGAAGCTAAAC
CTAATAATGATATATGGTCTGTTTTAAAGGGCATAGACTTTGATTCGTTG
ACGAAAAAAGTTTTAACGGTtaacaaagaaacaaaagttGAGGACAGTGT
GACAATACCTTCCAACAAGGAAGTTAACTTGGACACTGAAACGGGAAACT
CGAACCTTCAGAAAACATATAAAACAGATTGCTCTAATGAAGCAAATTTA
AAGAATTCAAAAGGgattttccacaaaataccgCTTGAACTTCAAGCAAT
GGATTTTACACGGGGATTGAGCCTGGATCCTCTTCATCCTGATCCGAGGC
TAAGACCAAGAGAAgtgtttaagaaatattctCAGACTTCGAAATTGAAA
CCAAAGAAAGATAGTACTACGGAGaaaaaaaaTACTGACATGCCTTTCTC
AATTCAAGCACACCAATCTAACAAAAAGAAACACATGGAACATTCTAACA
AGCCACAGCtagaagaaaatttaaaagaacgacCGTGTGATACTGAGAAA
CAACTGTCGAACGAGGATAAAGTATCACTTCCAAAGGAAAAACGACCATT
AAAAAGTAAAGGACTTTCATTGGACAAAAAACGACCACTCTGCGAGGAAC
GAACTTCTACCAAGGAGCAACGAGTACTTGATGACAAACGACCGAACGAA
CAAGGAACTCTAGATAAATCGAAGTCATTCATTGATAAGACACCTttaga
agaaaaacaacaaactttagaagatggaaaacaaaaagtagaaaatgatG
AACCACTTCATCCCAAGGGATTGTTCGAACAATCGAGAATAGCTATAGAA
CGTAGTATTAAACCATCCGTAACAACTCAAAAATTACCCGACGATAGAAC
ATTGCAACCTGAGGAAACGAGAACATTGCAACCTAAGGAAACGAGAACAT
TGCAACTTGAGAAACCTGAACGACGAGCCAACAAACAAAAACTGCAACCA
GTCAAACTAATCAAAGCATCCTTCGATAGTAAAGAACTTCTCGATATTCC
TTTACCTTCGAAACTCGATTTGAGCCTATTTTCTGATGACTCTCAAGAAT
CACGTGTTGAAAATGAAGTTATTCTATTGGACAAATCTCATGATGTGACC
AATGAAAACCCAGCAAAAATGACATCTGATCAAAAAGAAACAATTCTACT
GGTTAAACCGCTTAAAACGTCCAGTGAAAGTGTATTAAAGGAACCATGTG
AAAACAAATCGATATTAACGACAGAATTGGTCGAGTCTCAAAAGGTTATC
AATGAAAAAATTGATACGAGACCACTTGATCAAAAGGACACATTTCCATT
GGACAAGCCACAGAAAACGACCAATGACGTTGAAGATGTGACATCACGTG
ATCCAAAACAAGAAGTTTCATTGGTTAGTCCAGCAGTCGAGAAGGATGAG
AACAGAAACTTACTACAGCTAGGTATCACATTCGTTGTCGAATTCGTTAT
CAATacatttaaaggaagaaatttttgcggaaaaaaGTCTGGTGGATTTG
GCGGACTTAGCTGAAATCTGCTAAATTAAGATCCcgccaaaatttacttt
ttgcgCTATCCGCCTAATAGAATTTCTGAAAAATGTCCATGCATTCACGa
aatttgtgctatttcaggcttaAAAGAGGTTCATTAAACGCGTTTTGTGT
GGCCAaaaatttccatcaaatttaCTTTGTCCAGTCATTCGGCAAATgaa
attcccaccaaaatttcttcatttaaaGTAATAGATTTCAACATGAGAAT
ATTAATAGCGACCTCAGTTTCTTTACAACTGTTTTTTACAGCCTAATGAA
TCAAGTCCATGCGAAAACACTTTTACTGCATAATCTTAAATTCTCAAAAC
GGGCTTTTTACTTCCATTACTGCTAATTTTCCGCTACTTTacgaatttga
taaaaaataccctttaaaaggcaaaatgtgaaaatgaaaatttttgacat
tggGAAATCTCACAGCACAGATGTAGCCATCTCCTTGCCTCGTGGTTAAC
CTCGCCAataattcttacttttttaactAAATTTGCTTTACTACAGGGGT
TGGCAGTGACGtatgataagattttttaaagtttttatactGATCAAGAG
CATTTTTGTGGATTTCCAATAATTCCAATTCTCATATCTCACACCACCTT
GCTGGACAAGAGAGGAAGGGGGTTAAATATTATTGCTGTATTCTTGTTTT
GTCTTTAGATTTGTCAGGCGATAAACCTCCTTTATTAAACCAAGAAGACT
CAAAGGAAACCACCCAAATTaaaaaaccgaaaaagaaaaagaagaaatcg
aaaaagaaTCGACTCTCCTCCGAAAGCATTCAAAATATTCTCGATTCCGT
CCATAACAAAAGTACTGAAGAAGGAAAAGAAACAAGCCCGTCTATCGAGA
AAACCGAATTAACTCGAAATGATCTAGATCACAAACTTGAGGAAAAATCT
AAGCATATTGAATCTGAAAATCAAATGGATGTACCGCCATCAATTGAAAA
CACTGAAAAGATCATTGGTCCGATTCAAAATGATACCTGCCAAAAACTTA
AACTTGAGAGAGAATCTACACTTGACAAATCTAAAGATCGAATCGATAGC
CCATCATCCATAAAGAGCactgaaaacatttcaaatcgacctcaaagtaa
aatcggtccagaaatcaaaatcgaaagcgaaaaaatTAAACTGCAAGAGG
TAATCAATATTCCATTATCTATTGATAAGACTGAAAGCGATCATGGTGAG
CCTAAAAAAGCATCTATCCCTCCAAGGACAATATTTCAAGAGAATTCCAA
CGAAATTGACGTCAAAGATTCTACAGAGCTACAACAAGAGAATCCAAAAG
ATTCGTCATCAAAAGTCAGCAAGACACATTGTAAATTCTTATTCCATTCA
ATCGCAAATCGCCTGAAAAGcttgaatgaaaaagaaaaatcaatatctgG
TCTGGAGAATAGACAATTAAGATCAGATATTCAGAAGCTCACTCCGGAGT
ATGAGATAAAAAGATCGACTTCCCCTGATCAAACATTCGTTTCTCCTGTC
AAAAAACCATCAAGGAATACTATTGGCCAGCATCAGTCACGTGACAAAAT
TCAAGAACCTGGATTAGTTGGACTCGCATCAACACCAAACACGATTGGTC
AAGGCTGGGCATGTGACACTTCTAAACCAATGGATTTACAGTTTAGCCAG
TCATCATCGAGTCAGATTGGTCAGGAGAGAACACGTGACCAATGTGAACC
AATAGAATCACATCATACTGGAAAATCGTCAAATCTGATTGGTGGAGAGA
GGTCACGTGACGAAGATGACTCCCTCTCATTTGAGCATTCTTATGAAGCA
GCAAATACGCTTCTACTTCTTGCAACCAGTAGACCAGGCTCGCCTTCAGA
TAgcgatgaaaattttgattccgAGAATGAAAGTTTCAACTCCGAACACG
GAAACCTCAAAGATAAACATGTAAACGAAACTGAGGTTTTCGATCAATCT
ACAGTGCCACGTGATCAAAAGGAAGCTTTTTTATTGGACGATTctcaaat
caaatttgaaagcAACGAGAACCAAAGGGAAAGTTTATTTACCGAAGCTC
ACGCTATTCTACAACAAACAGAGACTCCAACATCAAATGAAACTTGTCCA
AAAAGAGAAACAATGGTTTCCGAATCGCTGCAAAATATCGAGGAGATCGA
CGGAAGCATCGAGAAAGAGATTTTGTTAACAGGTGATCCTGAACTAGAAG
AAATCGGAATTATTGAACAAAGTAAAGTAGAAGGGGAACTGACGAGCGAA
GATTCCGATTTAGAATCACGTGATCAAAATGAGGTAGTATTTTTGGATGA
TGAGTTGCCTCCCCTACCTCCGATTGGTCGAAAGACGTCATGTGACCAGA
ATGAAGACATGATATTGGACGAGGAGGTGTTTAATGTACCCGGGATCGCT
TTGAACGAGGAAACTCTTGATGCGGATGATATTTATAAAGGAATCGAGAC
TGATTTTGATTTCGCCAATGAGATTAAAGAATCGATATCATGTGATCAAA
AGGAATCGATCTCATTGGATAGTTCTCATAAAggagccaatcagattgct
gaaTCTATACCACGTGGTCAAAAGGAAACCTTCTCATTGGATGATAATCA
TAAAGGAACCAATCAAACTGACGAATCAAAACCGTGTGACCGAAATAAGG
CAAGTTCATTGGCTAACAGTAAagaaacattacgtaatgattCAATGGAA
ATCGAAATTATAGTTAATGAGAATGAGTTTGAGAAGGAAGAAGCGAAAAC
AGCGAGTGGTgaaaaggaggagaaaacggaagagcgaaagagagatgtaa
agaaagaacggagtaacgaaaaacgagaaaacgcaagaaaagGTAAGTGA
GGTTACAATATTTTCAAGGGAAACtcttctattcatgatattcatgactt
AGTATTTGATACGGAAGCAGCCAAAATAGTCCGGTCGTTTGTCACtgtta
ttgtttaaattcaaagttAGTGGCAAACATCGGGTGTCGTGACATTACGT
CAtggatatcatgaattaaaagCTAACTTGAACAGAGTGGATGAGAAAGT
CTTGAGAGCTGTAATTACTTTTGTTAAGACTCTTGTGATCTTTTTACTAT
TTACTTGGTAGGATTTACTTAATCTTCTTCAAAACTCCTTtccttcaaaa
tatgttttaagGGGGCTTCTGTGCCTACTTTTCGtggtttattttgactt
tgaagtgctctttaaaaaaagattttctattcTGATTAAAACTGattaaa
catttataaaattttatcattcatATAGTTTCCTCCACTTTCCTTTAATT
AGCTGGACACTAAAATTTATGGAAGTTATTTATTTGATCCTGGGGGCTGA
GCAAGAATCACatttatttctaaacaaaaattGCTACATGTATTAAAATG
TCGGTCTACCTACTTGAACTAGGGGTTCAACCAATGAATGAGCTTAATAT
AAATCCTTGAggcagtttctcaatcccgctcaagaaaaatctttttatcg
GAATTTTTATCAAAGTGGTACCCGcgtcgagagcgctagatctactttgc
TTGTACACTAGTGATGTAGCGACGTTTGTCTTTACACTACAgaggcttct
ttgcgggtacccctttaaaaaaaacgccgatcaaagatggtggatatggC
TTGGtccaactttttgataaataacgagattgctcacgggaattttttga
cctgcattccgcgcgatcgtgtttaatcgcccgcgcgtgtacgctctgtg
aattctgtctgctgtatatgggtactgtatgctagaaaaagctcctctcc
tcatcagtcttttgagacttgaaggagattggagagtgtcctaacccccc
agatggaaattctaattttacagGCACTAACAGGGTTTACAGCCCGTTTG
CAGCAGCCCCACACTAAAGAGTCCTGTAAATCACCTGAGAATCAGCGATC
TGCTTCCGCATATTggaaatgatctaaaatcatttgtttaagaagttaat
accttgacagggtaaataaaattatacaggtcatgGCAAATAAAGATATA
ATATCTTTTATCATTCATCCATCCTCAAGTGTCTTTAGTGGGCGAGTGGA
GAAGGCGGTGGACTGGTAGGTCCGTGAAAGTCGTTTTcgagagttcgaat
cctatacggtgcgttggagtttgtgttattttgtcagcattgaccaaact
ttttcttgtttttttcgaggtcttattgatatttatgaaaattcccgtta
tatttttaagaaacaaaaatgtgtcacctcagtgcagtttgacttaagta
cagtatttcaaagaTCAGGTTGGTTATTAGtgggtggagagtcaagagtc
aagagtcgtgactttcccttctcttgaaaatccagtattccaaaacttta
aacaaaaaaaaatgcattaaaatcgactttcgtttttttaaactattatc
acttttttcagaaccacaagtgaaaagaaaagcagctaaaaaatgattga
caggtctaaaaaatgattgacaagtGCGGGTTTGCTCGCGCGGGTTAAAA
ATtctcgtgagcaatctcgttatttatcagaatgtagggtttataaaggt
cgaCCAATCTCGAATTTGTTGCTCTTGTCATGACAAGATTGAGATGGTTC
TTTCACCCCTGTGATTTCCCTTTTGCATTAGCGTGAGGCTGATGTATACA
AATAACTTTATTTCTCACTTCAGCCCCGATAGATTTACGGGAGAAGTTAC
GGCTTCGACGGGGAGAGAATAAGGAAAAAGACCAAAATAAAGATGAAGTG
AAATCTACACGCTCAAAAAGAG

Coding sequence (CDS) from alignment at sc0000096_pilon:207308..214329+

>MSTRG.12616.3.p1 ID=MSTRG.12616.3.p1|Name=MSTRG.12616.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000096_pilon:207308..214329+ (Clytia hemisphaerica_ch_hm2_pilon)
GACGTGGAAGAAGTCTATACATTAGAAACATGGATGGTTGGCGAACCGTT
gaagaaataccaaaaaaaagtcttaaaaaaacgtgaagAAAAGTGTCAAC
TAAAATCGTTCGCTGAAACAGCTCAGCCTATCAAACCGTCTACAGGCGCT
ACAAAGAAACCTTGTTCTGGTGGAGGTGTCAAGGATTATCTGAAGAAACT
AACGCAGTCTTTGCGACAAAATACATCATCTCCTACATTGTTTGCCAACC
TTCACCGAAACTCAGCAATGACAACCAATAAGCCATTAGAACAAGAACGA
AAAATCCCCCGATAGGACGTGGAAGAAGTCTATACATTAGAAACATGGAT
GGTTGGCGAACCGTTgaagaaataccaaaaaaaagtcttaaaaaaacgtg
aagAAAAGTGTCAACTAAAATCGTTCGCTGAAACAGCTCAGCCTATCAAA
CCGTCTACAGGCGCTACAAAGAAACCTTGTTCTGGTGGAGGTGTCAAGGA
TTATCTGAAGAAACTAACGCAGTCTTTGCGACAAAATACATCATCTCCTA
CATTGTTTGCCAACCTTCACCGAAACTCAGCAATGACAACCAATAAGCCA
TTAGAACAAGAACGAAAAATCCCCCGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12616MSTRG.12616Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12616.3.p1.exon1MSTRG.12616.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12616.3.p1.exon2MSTRG.12616.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12616.3.p1MSTRG.12616.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000096_pilongenomesc0000096_pilon:207308..214329 +