MSTRG.12598.1.p1 (mRNA) -

Overview
NameMSTRG.12598.1.p1
Unique NameMSTRG.12598.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000096_pilon:4808..10004+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12598.1.p1 ID=MSTRG.12598.1.p1|Name=MSTRG.12598.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5197bp|location=Sequence derived from alignment at sc0000096_pilon:4808..10004+ (Clytia hemisphaerica_ch_hm2_pilon)
AACAAAAGGagaacaaaaaaaactaatcatTAAAAACAATTATGATTATG
AAAATGAACCATGATGGTATTATACCAATATCATGTGATGCATGCAGAAC
CAAAATTATGGagaaacattacatcatggttggcgccaaaacgaggctac
aTTATAAATGTTTGAGATGTTCTTCATGTCAATGTTCTTTGTCAACTGCT
CAAACGTGTTAtgaaaaaatggagaaaatcttCTGCAAGAACTGCTACCT
GATGTAAGATtatcttatttttattgttcTGATTTTTATTATGATTCTGG
AAAGTTTTGGATAGTAAGTTTTTAGtgaagggacattaaagtagttaAAT
GTAAACATTAttcgaaccacgtgtcattaaagagaacaatttaaaatcac
gtgtccaaaacaaacttgtaaaataattgaaacagccaaaatcagccata
tttgtttttattttttattttgacatgtgacatttgttttgattttgtat
cccgctgcatacggtttgtttacaaatttcgtcattACTTTTATGCCCAT
TTAAGCGCAACCTTTGTTGGATAAAAAGTTACCACCCTTCAGAAGTAAGC
CTAAAAATGACCTATTTCACCGTATTTCACAGtactgtaactttttattt
gagaaaGATACTAAAATTCTGAGCaccatatttgaaatcagcaaagcTCG
AAAATGCTCAAAAGTCTTTATTGTGATGAGCTTTTGTAAACAGAAGAAGC
ttcttcacttttcttttccattttggaaacatctttccaacggtgtctAG
TTTTTTAATAAAGCAAAGATACACACTGTGAAATTGTCAAAAAGATAATT
TGTCCACATCATTTTGAGGCAGACTTGAGAACTTTGCTGGCAAAATAGCC
GTATAGATGTAATCAGGAGGCTTCAAAGTGCATGATTTTAagacaaattt
aaaattttgaaaatgatagatatgccctccgatgtatcggaatgggtcct
acccacggtggagtaggaatcacaacgcaagcagacattgcaaccctgca
gatgcgagctgccgagccatggtgtataccacgacactcgaactacacgg
gagaacggatgtcctcgcaggtgtagaacctcctgagtgtcacggcacac
cacaatgtctgaaatatctacccatactcttgtatcagagttatggtacc
caattcccctcacatggcatgggttgacccgggcgaaggaacattcactt
gccaagtgaatcgtagtgccacggtgggtatcgaactcgagtctcctgga
cagaagtcaagcacgataaccactacaccactACGCCTTACACCACTACG
CTcctaaaatgaagatgaaaaaaatgaagactaTTTGTACttaaccaaaa
ttttttaaatttgtacttTTCTGATACTTTGAACTTcgctgattattttc
aatgccTTTAGTTTTTCTATATCTTTcttggatcaaaagttataaccCTC
CAAAATGGCTAGAAATAAATAGTTAAATagttaaaaatgaccaaaattgg
GCAAGATGGACCCATTTTGgattagactagtaaactagtcggttattact
tataaccttataataaaactgtcaatcaaataatgtaaacactaaagtaa
ttaaatattcagcgcgcgtgagagaaaaggaaaataaccgactagaagct
acttccaacgcctttttttcttcacctaaaatcgtaaggagagacataca
gattttctgtatgtctgacccgtgcgggattgcatttatttttctttctg
tttattgcgtttttagaaatgctcatttatttatatgttctcatgttcaa
tgttactatgaaatatcatttagtcaaaaaagttggatggattctcaaaa
acctaaaaaaagttgtaaaattaaacaacgttttttgagggaagtagctt
ctagtcgttgaaattcagaaaagagactcAACTTCActccttcgattctt
tttatttggagcttgattattctttgtatatgggtctgttttcaacgact
agtttactagtctaatttTGGATGAATAGAATAAATAATTCTCAAAAgct
tgtcaaaatattttttccgcaTTAATTTAGAGGACgcattaaattagaga
aatgactgccatattattatattttaattaAGGAAAAAATGATGGTCTTT
GAGATTGCGGAATTAATGATCCAGGAAAAAATTTGTAAGATTCAACCAAA
ATGAGtggaaattataaaattattaagGAAAAAGAATGCGgaatgtaaat
ttgaattttcattaaGGAAAATAGATACAACCCGGAACATGGATGAATTG
TTCACGTTCAAGAAGACacggaaaatattttcataattccTTAAACATta
tggagaaaaaaacaattcagaGCAAAATAATTAGAATGAAATTGGGCATT
TTCTTTTGGCAAGCCGAGTATTCCTAAACCGTTGAAGTGAAATTAGATCC
GGTTTAATGGAAAATGTATCTGGAATTTatctgaagtaaaaaaaaattta
attactcTTTCGAAAAAGTTGTCTGTTATTGTAACCGGTTATTCATCTGA
TGTTCTCTATCATTCAATCTTCCTATAAATCGAATTCGTTTCTAGTCCCT
GTCAATGAGAAActctcttaaaatactttcctaATTGGGGAGAGCCAATT
ATATTAAGTATTAAGTATCAGatgattataaaattattcGAAGAAAACAT
TGCATCATATAGAAGAGTTTATGCATgtttaagttttaaaaatatctaCT
ATTCTTtcttttgaggggggggggggcagtgatTATTATTCTAAAACAAA
TGCATATTgaaaacgggggggggggggtccttaGGCAACAAATGGAGGGT
GCGGTAattgccgcccttaagggtaccttttttggatttccaaagtcccg
ctaagcgctaagggtcggaaaaatcagaaaatcaaatttcaatcccacta
agggtcggaaaaacaggaaaacTTCGATTTTTTACCCTTGGAAAgttcaa
aatttggtcaaattagtcctaataagggtcgtaaaattctcaaagttttc
ctttcttttctcctttttagtcccagtaAAGGGTCCAATGgtcaaaagtc
gggcggcaccttccccccgtcagctcgcaaccctagtacccccccccccg
ggatattGAAGCTCTACTGTAGAAAACCTCAAGGAAACCTTTTTGagatt
tacaaaaatctgcttaagaaGCAAATAAGGACAGGATCTTATGTGATATC
TTAAAGCTTGCTTATAGCCGATATGgcgttttttgaatatttcttacTTA
TAACTATAAGTCATTTTTGTTTGGCGAGACACCAATCACGTTAGAAAAAA
GACCTAATAATCGGACTCATTATTTGCGGTAACCGCTAGGACATCCTATG
GGTGGATTCAATACTTTctatctttttgattttcaatttgcGAATCGAGT
GCCTGGCCCTATAAATATATTTTGCTTGCATCTTTTGTGAGTCTTGAGTG
ACCTGCCTCGATCGCTTTGtaacttttatacatatacactagtatttaat
gttttttatttagaatATGGTCTAAAACAAAATGTCAACGTTGTCAACGC
GGAATCAGCAATACAGATCTGGTAATGCAGGCGCACAATTGTTATTACCA
TGTCGAATGTTTCGCGTGTTATTCATGTGGAATTCATCTAAAGAAAGGAC
AACGTTTTGGTGTTAAAGATCAAAAAGTGTATTGTGAACTACATTACAAA
CAAATTCGGCTACCGGCTAATTCACCAATCAATGATACGAATAATAATAT
TGGAACTCGTGAAAAACTCGGTAAGAAAATTGGGCCTATCCATTAAATTT
CCGTatagggggtggacgaaccttttccaTCAAGTCAAACAGTGTTCTTT
GTGGAGTGTTCTTTggaccaaacctttttaaaaatttcttggGATTTATG
AGATGTTTGTTAGGTTAATGGATAAGATTGACGATTCAGTTTCAAGGCTT
TCTTGGGATACATCAGGTTTTTATGAGGTTGTATTGGGTGGGATTGGCAA
AGTTTCCTTTagcttttattgtttttgtttcatgagGTTTTCTTTGGGCC
AATTCTTTTCAAGGCTTTCTTGGGattctttatcaggattttaaAAGGTT
GATTTGAGTGGGGTTGGCAAAGTTTCCTTTAGCTTTTATTGAGAGGGTTT
CTAGAAGtttttttGGACCAAGTCTCTTCAAAGCTTTCTTGGGATTTTTT
ATTAGGTTTTTATGAGGTTGTATTGGGTGGGATTGGCAAAGTTTCCTTTA
GCATTTATTGAGAGGGTTTCTAGAGGTTTTCTTTGGGCCAATTCTTTTCA
AAGCTTTCTTGGGATTCTTTATCGGGATTTTAAGAGGTTGCATTGAGTGG
GGTTTGCAAACTTTCCTTTAGCATTTATTGAGAAGGTTTCTAGAGGTTTT
CTTTCGACCAATTCTTTTCAAGGCCTTCCTTTAGTTCTTCTTTGGAccga
acttttttttaaatttcttcggATTTATGAGATGCCGTTTGTTAGGTTAA
TGGATAAGATTGACGATTTAGTTTCTATTAAATTCTACAATCTATAATAA
CTATATGTCCAATAATAACTTGAACTCTGATTGACCTCGTGATTCCtaag
ataatttttaaaatcagaaGTTTTTGACACATAAGGTTTTTTGTACTCTg
ggaaaattgtcaaaaatatttttatggattttctaaaGTGAGGTTAGCAC
TTTCTTGATTTGTCTTTGGGCCTTTAAAATTGTTTGAGGATTCAAGAAGT
ATTCAGAAAGTTCTTATGGATAGGATTTTGTGTTTCTATCTTTCTGGAGA
GCTTGTTGCAATTCACTTCGGTTTACTGGGGTAGTTTTTGGGGTCAACTG
AAATTTTCTGGAACGTCTTTATAATTAAACTAATCTAAGGgtgctttaaa
actttatttcacCTTCCCTAGATGTGTAATATTAATGCTGTGAATGTTTC
TTCCAGATCGTAGATATTCAATGCCATCACTTTCACAACATTTCAATGTC
AAAGATGAACCATGCAGAAGTTTATCACCTCTAATaacacaaacaccttt
cccacaacaaaaacaacaacatcaacaacaacaacaactaattttgg

Coding sequence (CDS) from alignment at sc0000096_pilon:4808..10004+

>MSTRG.12598.1.p1 ID=MSTRG.12598.1.p1|Name=MSTRG.12598.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1827bp|location=Sequence derived from alignment at sc0000096_pilon:4808..10004+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATTATGAAAATGAACCATGATGGTATTATACCAATATCATGTGATGC
ATGCAGAACCAAAATTATGGagaaacattacatcatggttggcgccaaaa
cgaggctacaTTATAAATGTTTGAGATGTTCTTCATGTCAATGTTCTTTG
TCAACTGCTCAAACGTGTTAtgaaaaaatggagaaaatcttCTGCAAGAA
CTGCTACCTGATaatATGGTCTAAAACAAAATGTCAACGTTGTCAACGCG
GAATCAGCAATACAGATCTGGTAATGCAGGCGCACAATTGTTATTACCAT
GTCGAATGTTTCGCGTGTTATTCATGTGGAATTCATCTAAAGAAAGGACA
ACGTTTTGGTGTTAAAGATCAAAAAGTGTATTGTGAACTACATTACAAAC
AAATTCGGCTACCGGCTAATTCACCAATCAATGATACGAATAATAATATT
GGAACTCGTGAAAAACTCGATCGTAGATATTCAATGCCATCACTTTCACA
ACATTTCAATGTCAAAGATGAACCATGCAGAAGTTTATCACCTCTAATaa
cacaaacacctttcccacaacaaaaacaacaacatcaacaacaacaacaa
ctaattttgATGATTATGAAAATGAACCATGATGGTATTATACCAATATC
ATGTGATGCATGCAGAACCAAAATTATGGagaaacattacatcatggttg
gcgccaaaacgaggctacaTTATAAATGTTTGAGATGTTCTTCATGTCAA
TGTTCTTTGTCAACTGCTCAAACGTGTTAtgaaaaaatggagaaaatctt
CTGCAAGAACTGCTACCTGATaatATGGTCTAAAACAAAATGTCAACGTT
GTCAACGCGGAATCAGCAATACAGATCTGGTAATGCAGGCGCACAATTGT
TATTACCATGTCGAATGTTTCGCGTGTTATTCATGTGGAATTCATCTAAA
GAAAGGACAACGTTTTGGTGTTAAAGATCAAAAAGTGTATTGTGAACTAC
ATTACAAACAAATTCGGCTACCGGCTAATTCACCAATCAATGATACGAAT
AATAATATTGGAACTCGTGAAAAACTCGATCGTAGATATTCAATGCCATC
ACTTTCACAACATTTCAATGTCAAAGATGAACCATGCAGAAGTTTATCAC
CTCTAATaacacaaacacctttcccacaacaaaaacaacaacatcaacaa
caacaacaactaattttgATGATTATGAAAATGAACCATGATGGTATTAT
ACCAATATCATGTGATGCATGCAGAACCAAAATTATGGagaaacattaca
tcatggttggcgccaaaacgaggctacaTTATAAATGTTTGAGATGTTCT
TCATGTCAATGTTCTTTGTCAACTGCTCAAACGTGTTAtgaaaaaatgga
gaaaatcttCTGCAAGAACTGCTACCTGATaatATGGTCTAAAACAAAAT
GTCAACGTTGTCAACGCGGAATCAGCAATACAGATCTGGTAATGCAGGCG
CACAATTGTTATTACCATGTCGAATGTTTCGCGTGTTATTCATGTGGAAT
TCATCTAAAGAAAGGACAACGTTTTGGTGTTAAAGATCAAAAAGTGTATT
GTGAACTACATTACAAACAAATTCGGCTACCGGCTAATTCACCAATCAAT
GATACGAATAATAATATTGGAACTCGTGAAAAACTCGATCGTAGATATTC
AATGCCATCACTTTCACAACATTTCAATGTCAAAGATGAACCATGCAGAA
GTTTATCACCTCTAATaacacaaacacctttcccacaacaaaaacaacaa
catcaacaacaacaacaactaattttg
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12598MSTRG.12598Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12598.1.p1.exon1MSTRG.12598.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12598.1.p1.exon2MSTRG.12598.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12598.1.p1.exon3MSTRG.12598.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12598.1.p1MSTRG.12598.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000096_pilongenomesc0000096_pilon:4808..10004 +