MSTRG.12594.1.p1 (mRNA) -

Overview
NameMSTRG.12594.1.p1
Unique NameMSTRG.12594.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:1155324..1159678-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12594.1.p1 ID=MSTRG.12594.1.p1|Name=MSTRG.12594.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4355bp|location=Sequence derived from alignment at sc0000095_pilon:1155324..1159678- (Clytia hemisphaerica_ch_hm2_pilon)
AAATTACATGTTATAACGTATATGTTATAGTTGAAAAATAACATCAACAA
CAACTTTAACCATCTTTTAAGCTTGAAATTTATAAGGAAATAATGTTTTC
CAAGCCTATTTTACTCTATTTTGTCCTGTTGACGACTTTGGAAAAAGTCC
ACGTTTATATTGTTGGAGAACACCTTGATGAAGGTAAGGTGTCTGAAATA
TAAAGGCTAGTTTGAGATGATTTATTATGAAGATTGGGAATTTTTCGTAG
AGAGTCGTAATGTAATAAAGAAAGTGAACCCTGCTACCTTTTCCAACGGT
TCTGCGAAACAATTCTCAAGTGAGAAGTATATTCTATCCTTGATTTTTTT
TTCTGTAAGCAATGGGGTCATCAGGAGTATCAGGTCAATGATACACATCT
TTTGAAAACAAAAAATAGTGTTGTTTGAATGTAGACAATACAATTTTCAA
AAACTCTCGTAAAGATATGATTCATCATCTCTAGGATATCATAGTCATGA
CTATCAACTTCGACAACGACGAGCCATCGATGACTACTGTACAGTTGACG
AAAAGAATTTGGTCATCGATTGCACAAATATCAATATCTTTGCACAAGAA
GCAGGAATCAAAATGACAGTTAATAAATGTCAGCACCCAGTGACGCTCAC
TTTTCAGATCATTGTTGGAGCTCTAGGTAAGCTATTCTTATCATTCTTTT
TTCATATCTTTTCAAAAAAAAGTGCCATAAGTGGGTAGGTTAAATATTTT
AAGTAAGTTGTCCATCCAACATAATCAGATTTTATTTAAAAAATTCTCGT
CCGTCCTCTCAAGTAGCGTGGTGGGTCGACTAAAATTTGGGCAAATAACT
GGGGAGGCAATTTTCAAAGATTTCAATTCTGGCGCGCCCTATGAAGGGTC
ATTTTCTCTCTTTTTGGCCATAAACTACCATAACTAAGTTGAAAAAAAGC
AAAAGGGTGCCGAAATTAGTAATCAGAGGCGTCTTTTTGCACCCTTTGTA
TTTCGGTACCCCCCAAAAAAAATCAGCCGCTGGAGGGGCACTGCCCCCTG
CAACTACACTACTGGACTCCTCTCTTACTCCCGTAATCAAGACTTTCTGA
TCGAGTTATCTTACAACTCCAGCATTTTCTTTTTTCTAGACGTTGATTGG
AAAGAAGTGCTTTCATCAGAACAAGATATCCCCATCCCTGGATTCAATTA
CCAATTTCTTGGAGTTGCCAAAACGACGGTCAATGCAAAAACAATCATCA
AACCCCATGACAACCAGCTTCTGTTGAAGGTCTTCATTTTTACACTTTTC
GCGTTATTTAATTTAATTAGACAATAGATTTGATCCCATCCATTTAAAGT
CTGAAGAACAGGAGTCAGGGATAGAACAGGAAGAGAAAGAATCTTCAACC
TTTCTCGCGGCATATCGAAATATCGAAATTTTACTTTCGATCTGTCGTTT
ATATTAAAAAGACGCGGATGAATAGGAAATTAAGGAGCCCCTCCCCAGCG
GATGGCGCGATGGCGTGATGGAGGGTTTTTCGTGGTGTGATGGTGTGAAA
TTTTGAAAAAACGGCGTGATGGTTTGGTCGGCCCCAACTATGGCGGGGTC
TCCTATAGATCTCATTTTAAAACATAAAAGAAACGGTGCAAACAGTTTTA
TTCATCTGCCATTTATCCTTGTAACTTCCAATTGTCTTTAGCAGTTGCTA
GCTAGTCTATAAAATAAAGTCGAATGCTATGAGAGGGTCGAAAATCGAAA
ATTTCTCCCGTTGGCGCAAACCATGATTGCGCTTCCTCCGTAACTAACAT
TTTCCTCTTTTTCTTAGATGCCTATTCTTAGATGCATCAAAGACATCAGG
TTCTTTATTTCAGGAAAATATATATTTGTAGCAAAGTCTTAAACAGAAAA
AAGCAACAGGTTTATTATGAGTTGTAATTTTGAGCAGATTGGCATTGATC
AAAGGAATCCTGTGATGTTTAAACAATAATTTGGAAAAAAGAGAGTAAAT
AAGTTTTATACTATTTGTTTGTGTTACATATATATAGATAAAAAAAAAAA
AGTAAATAAGGGCGGGCGATTTTAGCCATACTAAATTGAAAATTTCTCCC
GTCGGCGCAAACCTCGTTCCCCTTTTGAAAACTATTCACGCTAATTCACA
ATAAACCGGGGTCCCTTGATGTGACCCACCAGTTATCATACAATTTTTGA
TATGCATAAGTCAAGATTACGTCATTTTTCCTATCGGAAACACCCGAAAA
AAACTAGAATTTGTATTACTAAAAATAGAAAGAGGTCAACTTCCTTCCAG
ATTTTTCGGGTGTTTCCGATAGGAAAAATGATATAATCTTACCTTACGCG
TATGAGAATGCTGAAAAACTTATTGACGACCAAACACACATCTATTTGTG
GGCAAAAATTCAGTTTATATAACAGCATTTTTTCCATACCAATGGGTCTA
AGCGTGGTCTAAAACTGAATTTATGCAGAGAATATGGGCGTGAAAACTAA
ATTTTCTAGCGGTAATGGCGTGAAATCGAAAAAAATTGGCGTGATGGCGT
GAAATCGAAAAAAATTTTGGGTACGCTGGGGAGGGGGCTTATTAAGTGTG
AATTAAATCAAATTAATCCAAGAGTTTCATTTCTAGCTCCTCTGAGGCTT
TAACTTCAATGAGCCTATCTTCAGTTTCCTCCCCTAAGATTTTGAATTGA
TAAGCTGTTTCTTACTCCAGTGTACTTATTTGATGTTTTATACAAAGGAC
CCCAACCCAAGAAAAATGATGGACTAGTCATTAAATAATATGTTTAATTA
TGGGTGAAGTTTAAAAATTACCTGTCTTCCACAGGTCAGCCTAAGAGCAA
ACGTAACAGTGTTGGGACAATTATTTTCAAAGGAAGTACACCTTTTTGAG
CAGAATCTACCATTTGATGCTAAATGCTCCCAATCCTCAGGTAGGTGAAA
CTTATCCTTAAAAATTGAATTCCATTAAAAGGTGTTCATTTATACTGGTT
GAAAAAATTCAGAAAAATAAAAGTGATAATTGGGCCAGGGAAAATTGTAA
TGTTTTTAGCTAGCTGGGACGAAAGACATTTGATATTAAGCAGATACTCA
AACACTCTGTATCTCTACTTCATGCTCTATCAAATGGTGTCAATCATTCT
TTCCACTTATAGTTTTGCCTGTAACTTATGGCCAACCCGCAAACCCGTCG
CCAAATACATATTCTGCTTTCGAATGAGCCAAACATTATTCGACTCAAGA
GTTAATGTCAAAGGAACGGACTCTCATTAACTGGGATAGGATATAAGTAA
AAAGGTGATAGCAACATAAATTAAGAGCTCCTTGGAAATCAAGAATAATT
TTTCTATTATAGGTGCTTGGTCAAGTTACAGCACTGGCAGCAAAGTTGGA
ATAATTATTGGAATACTTTGTATAATTATCATAATCAGCGTAATCATTGC
TGTCGTCTACCGTAAAAAAGGAGGTCGTATCAATTTATTTCGATCAACAC
CACGTGGAGGGCGGGGCGCCAACGTGATGAAAACTGTGACGAGTTATCAT
AACAAGCAATATGAAAGCGATAAAACCAACATTAAAGTGGCTGGCAAAAA
AGGTCCACAAAAATTCAACCCTTTGCAGAAAAAATGAACATGTTTTTAGG
ACAAAAATGAAATGTAATATTTGCCCAACTTTACGATGAGACATTGCATT
GTGGGAAGTAAATTTATAATAAGCGTGAGTGGAATGATAACACCATTGTA
TGAAGTTTTCTGGGAATGTTATAAATGGAAGTATACAAATATTTTGGAGT
AACTTTTTACCCAAGGAAGAGGTTGTATTGTATTTCGGGTAGGAGGAAAC
GAAAGACAAAGATTAAAGATTTATAAAGTCTAAATTTCCACAACATTTTT
TGAATTTTTGAAGTGGAGGTGGTGAGTTATCTCTCTCTTTATTGAACTCT
CTGCATGATGCAAATCTCGAACATATTTACACCTTGTATGAATCGAGAAA
TTTGAAATTATTTACCAATGAGTAAGAGCAAAGGCCTTCCTAGATGAAGG
AGATTAGCCATGGGTGTCAAATGGCTCTAAGATGACCTCATCATCATTTT
TTACTACAATTTTCGAATTCAAACAAATGTAGTGCTACTCATCAATCAAA
GTAATGCGATAACTCAACCTTTTCACATCCATGCAAAACTACTAAAGCCA
AGGGTATTACTTTACAAGAAAGATTAAAAGGACAAAATACCACAGACATC
TATTATACCAATGGCTCGTGTCAAACCATTCGTACATTTCCATCCCGCAG
GGCTCTCTCAATGAGTCTCGCTCCTTCAAATAAGCCGGTATTATGACGTC
ATAGG

Coding sequence (CDS) from alignment at sc0000095_pilon:1155324..1159678-

>MSTRG.12594.1.p1 ID=MSTRG.12594.1.p1|Name=MSTRG.12594.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4020bp|location=Sequence derived from alignment at sc0000095_pilon:1155324..1159678- (Clytia hemisphaerica_ch_hm2_pilon)
GTGCTTGGTCAAGTTACAGCACTGGCAGCAAAGTTGGAATAATTATTGGA
ATACTTTGTATAATTATCATAATCAGCGTAATCATTGCTGTCGTCTACCG
TAAAAAAGGAGGTCGTATCAATTTATTTCGATCAACACCACGTGGAGGGC
GGGGCGCCAACGTGATGAAAACTGTGACGAGTTATCATAACAAGCAATAT
GAAAGCGATAAAACCAACATTAAAGTGGCTGGCAAAAAAGGTCCACAAAA
ATTCAACCCTTTGCAGAAAAAATGAGTCAGCCTAAGAGCAAACGTAACAG
TGTTGGGACAATTATTTTCAAAGGAAGTACACCTTTTTGAGCAGAATCTA
CCATTTGATGCTAAATGCTCCCAATCCTCAGACGTTGATTGGAAAGAAGT
GCTTTCATCAGAACAAGATATCCCCATCCCTGGATTCAATTACCAATTTC
TTGGAGTTGCCAAAACGACGGTCAATGCAAAAACAATCATCAAACCCCAT
GACAACCAGCTTCTGTTGAAGGATATCATAGTCATGACTATCAACTTCGA
CAACGACGAGCCATCGATGACTACTGTACAGTTGACGAAAAGAATTTGGT
CATCGATTGCACAAATATCAATATCTTTGCACAAGAAGCAGGAATCAAAA
TGACAGTTAATAAATGTCAGCACCCAGTGACGCTCACTTTTCAGATCATT
GTTGGAGCTCTAGATGTTTTCCAAGCCTATTTTACTCTATTTTGTCCTGT
TGACGACTTTGGAAAAAGTCCACGTTTATATTGTTGGAGAACACCTTGAT
GAAGGTGCTTGGTCAAGTTACAGCACTGGCAGCAAAGTTGGAATAATTAT
TGGAATACTTTGTATAATTATCATAATCAGCGTAATCATTGCTGTCGTCT
ACCGTAAAAAAGGAGGTCGTATCAATTTATTTCGATCAACACCACGTGGA
GGGCGGGGCGCCAACGTGATGAAAACTGTGACGAGTTATCATAACAAGCA
ATATGAAAGCGATAAAACCAACATTAAAGTGGCTGGCAAAAAAGGTCCAC
AAAAATTCAACCCTTTGCAGAAAAAATGAGTCAGCCTAAGAGCAAACGTA
ACAGTGTTGGGACAATTATTTTCAAAGGAAGTACACCTTTTTGAGCAGAA
TCTACCATTTGATGCTAAATGCTCCCAATCCTCAGACGTTGATTGGAAAG
AAGTGCTTTCATCAGAACAAGATATCCCCATCCCTGGATTCAATTACCAA
TTTCTTGGAGTTGCCAAAACGACGGTCAATGCAAAAACAATCATCAAACC
CCATGACAACCAGCTTCTGTTGAAGGATATCATAGTCATGACTATCAACT
TCGACAACGACGAGCCATCGATGACTACTGTACAGTTGACGAAAAGAATT
TGGTCATCGATTGCACAAATATCAATATCTTTGCACAAGAAGCAGGAATC
AAAATGACAGTTAATAAATGTCAGCACCCAGTGACGCTCACTTTTCAGAT
CATTGTTGGAGCTCTAGATGTTTTCCAAGCCTATTTTACTCTATTTTGTC
CTGTTGACGACTTTGGAAAAAGTCCACGTTTATATTGTTGGAGAACACCT
TGATGAAGGTGCTTGGTCAAGTTACAGCACTGGCAGCAAAGTTGGAATAA
TTATTGGAATACTTTGTATAATTATCATAATCAGCGTAATCATTGCTGTC
GTCTACCGTAAAAAAGGAGGTCGTATCAATTTATTTCGATCAACACCACG
TGGAGGGCGGGGCGCCAACGTGATGAAAACTGTGACGAGTTATCATAACA
AGCAATATGAAAGCGATAAAACCAACATTAAAGTGGCTGGCAAAAAAGGT
CCACAAAAATTCAACCCTTTGCAGAAAAAATGAGTCAGCCTAAGAGCAAA
CGTAACAGTGTTGGGACAATTATTTTCAAAGGAAGTACACCTTTTTGAGC
AGAATCTACCATTTGATGCTAAATGCTCCCAATCCTCAGACGTTGATTGG
AAAGAAGTGCTTTCATCAGAACAAGATATCCCCATCCCTGGATTCAATTA
CCAATTTCTTGGAGTTGCCAAAACGACGGTCAATGCAAAAACAATCATCA
AACCCCATGACAACCAGCTTCTGTTGAAGGATATCATAGTCATGACTATC
AACTTCGACAACGACGAGCCATCGATGACTACTGTACAGTTGACGAAAAG
AATTTGGTCATCGATTGCACAAATATCAATATCTTTGCACAAGAAGCAGG
AATCAAAATGACAGTTAATAAATGTCAGCACCCAGTGACGCTCACTTTTC
AGATCATTGTTGGAGCTCTAGATGTTTTCCAAGCCTATTTTACTCTATTT
TGTCCTGTTGACGACTTTGGAAAAAGTCCACGTTTATATTGTTGGAGAAC
ACCTTGATGAAGGTGCTTGGTCAAGTTACAGCACTGGCAGCAAAGTTGGA
ATAATTATTGGAATACTTTGTATAATTATCATAATCAGCGTAATCATTGC
TGTCGTCTACCGTAAAAAAGGAGGTCGTATCAATTTATTTCGATCAACAC
CACGTGGAGGGCGGGGCGCCAACGTGATGAAAACTGTGACGAGTTATCAT
AACAAGCAATATGAAAGCGATAAAACCAACATTAAAGTGGCTGGCAAAAA
AGGTCCACAAAAATTCAACCCTTTGCAGAAAAAATGAGTCAGCCTAAGAG
CAAACGTAACAGTGTTGGGACAATTATTTTCAAAGGAAGTACACCTTTTT
GAGCAGAATCTACCATTTGATGCTAAATGCTCCCAATCCTCAGACGTTGA
TTGGAAAGAAGTGCTTTCATCAGAACAAGATATCCCCATCCCTGGATTCA
ATTACCAATTTCTTGGAGTTGCCAAAACGACGGTCAATGCAAAAACAATC
ATCAAACCCCATGACAACCAGCTTCTGTTGAAGGATATCATAGTCATGAC
TATCAACTTCGACAACGACGAGCCATCGATGACTACTGTACAGTTGACGA
AAAGAATTTGGTCATCGATTGCACAAATATCAATATCTTTGCACAAGAAG
CAGGAATCAAAATGACAGTTAATAAATGTCAGCACCCAGTGACGCTCACT
TTTCAGATCATTGTTGGAGCTCTAGATGTTTTCCAAGCCTATTTTACTCT
ATTTTGTCCTGTTGACGACTTTGGAAAAAGTCCACGTTTATATTGTTGGA
GAACACCTTGATGAAGGTGCTTGGTCAAGTTACAGCACTGGCAGCAAAGT
TGGAATAATTATTGGAATACTTTGTATAATTATCATAATCAGCGTAATCA
TTGCTGTCGTCTACCGTAAAAAAGGAGGTCGTATCAATTTATTTCGATCA
ACACCACGTGGAGGGCGGGGCGCCAACGTGATGAAAACTGTGACGAGTTA
TCATAACAAGCAATATGAAAGCGATAAAACCAACATTAAAGTGGCTGGCA
AAAAAGGTCCACAAAAATTCAACCCTTTGCAGAAAAAATGAGTCAGCCTA
AGAGCAAACGTAACAGTGTTGGGACAATTATTTTCAAAGGAAGTACACCT
TTTTGAGCAGAATCTACCATTTGATGCTAAATGCTCCCAATCCTCAGACG
TTGATTGGAAAGAAGTGCTTTCATCAGAACAAGATATCCCCATCCCTGGA
TTCAATTACCAATTTCTTGGAGTTGCCAAAACGACGGTCAATGCAAAAAC
AATCATCAAACCCCATGACAACCAGCTTCTGTTGAAGGATATCATAGTCA
TGACTATCAACTTCGACAACGACGAGCCATCGATGACTACTGTACAGTTG
ACGAAAAGAATTTGGTCATCGATTGCACAAATATCAATATCTTTGCACAA
GAAGCAGGAATCAAAATGACAGTTAATAAATGTCAGCACCCAGTGACGCT
CACTTTTCAGATCATTGTTGGAGCTCTAGATGTTTTCCAAGCCTATTTTA
CTCTATTTTGTCCTGTTGACGACTTTGGAAAAAGTCCACGTTTATATTGT
TGGAGAACACCTTGATGAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12594MSTRG.12594Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12594.1.p1MSTRG.12594.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12594.1.p1.exon5MSTRG.12594.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12594.1.p1.exon4MSTRG.12594.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12594.1.p1.exon3MSTRG.12594.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12594.1.p1.exon2MSTRG.12594.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12594.1.p1.exon1MSTRG.12594.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:1155324..1159678 -