MSTRG.12584.4.p1 (mRNA) -

Overview
NameMSTRG.12584.4.p1
Unique NameMSTRG.12584.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:1001968..1004388+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12584.4.p1 ID=MSTRG.12584.4.p1|Name=MSTRG.12584.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2421bp|location=Sequence derived from alignment at sc0000095_pilon:1001968..1004388+ (Clytia hemisphaerica_ch_hm2_pilon)
TACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAA
TGTGACGCACTCACTCGATCAGTTAACGGTCaatacaattcaaaattcat
tttaaatttgGGAGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCG
TTGACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCA
AAGAGTATTATAGATGGagggaaaactttcaaaataacaGGTGGCTTCTC
ACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCAT
CAATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAA
TCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGAC
TATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATG
ATTTTCGCTTTGGTGCAAAATTGACGGTAAGTTAGTGTAAAAAATCAACT
AAAACCTCGCCAGCATTGATATAACATCAATAGTTTCAAACGAAACCAAA
ATccttattttcacttttaatttttagtttggTTTTGAAACAGCTGTCCC
AGACTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAAAACCACaat
gtcaaaatattttccactTTCAATCACAACAAGGAATGGTTGCTGGAGTA
TCTCGACTTTCTGTCAAATTTCATTACTCGCCACCTGGCAAATTAGTTTA
CATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAG
ACTGTCTTCTTCCAACAACGCCTACAACAACAACCACTACGACCACAACA
ACTACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGA
ACCCGAAGTAACAACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGG
CCACCACAGAACAACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACA
GAACAACCCGAAGTGATCACGGAACAACCCGAAGTAACAACGGAACAACC
CGAAGTAACAACGGAACAACCCGAAGTCACCACGGAAGAACCCGAAGTAA
CCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTAACAACGGGA
GAACCCGAAGTAACCACAGAACAACCTGAGGCCACCACAGAACAACCCGA
GGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAAGTAACCA
CGGAAAAACCCGAAGTCACAACGGAAGAACCCGAGGTAACTACGGAAGAA
CCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCGAAGAAGACC
TATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaaaagaaaaactgtt
ttttattatCGCTTATCTAGAAAACATGGAAGTAAAGGACGATTTTTGTC
ACATATTGTCTTCTACCATTTCTCAAGCAGACTTCAACAATTAAAGTTTG
TCTTAGAAGTATGTGGAAACTTTACTTTCTTAACAATTTCTCAGAATGCT
TTAATAGTAAGCTATGCATCGTTGCAAAGATATTTTAGAGGTGAAGAATC
TAAAAGATTGTAACTTACTTTAGTACtaagtaaaaaaaagtaaagcgTCC
ACAAATACTTTTGATACGCGGATTTGGGtttcatccgcgaaattaagtct
caatggaatgttttcaaacaaatatcctgtcaaataaactactttttcaa
tgtttactggcatcaaagaagtgctaataGCGCGTCTTtaaacaaccaac
atgcatgatgtgatgatttgacagtaaaagcaACGAactcgtgaaaatat
tgtctcccaatagtgccacccgcgaaaatCTATCCTATTAAAGTATGTAT
GTCAACACATTGCAAACAATTTGGTAATTTTAGATACCCCATTCTCACAA
ACCCTGCACAGACTCGGTaggatttttgttaaaaagaacGGACCAAAGCT
CGATGGTTATTGATACTCCCATGTTTTATATGGCTGgagaattccattgt
ttttgagcaAGAAAATTCAGAGGGGAAGGACGAAATAGCACAATATTATG
CAGTGAGGATTTTCTTATCTGGTTATTTTCagcagggacaaaaattggag
aaaaactTTCAGATaggaacgatattttggccaatttttccagtagcAAG
GGGGTCCCAGTGGAGTGGgtatgtgagaagggggtgttttaagttttttt
taaacctgCATTTCAGCAAGAAGTAAGTGAAGATTATTCTCTTCTACCAA
GAAAACATTAGCTTATAATTTTTAATGAGAATTtactatggcgcgccaaa
gcggaaataaatactatctttcatttcgcgacactatctttcatttcgcg
acactatctttcatttcgcga

Coding sequence (CDS) from alignment at sc0000095_pilon:1001968..1004388+

>MSTRG.12584.4.p1 ID=MSTRG.12584.4.p1|Name=MSTRG.12584.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3285bp|location=Sequence derived from alignment at sc0000095_pilon:1001968..1004388+ (Clytia hemisphaerica_ch_hm2_pilon)
CACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATG
TGACGCACTCACTCGATCAGTTAACGGTCaatacaattcaaaattcattt
taaatttgGGAGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTT
GACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAA
GAGTATTATAGATGGagggaaaactttcaaaataacaGGTGGCTTCTCAC
AAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCA
ATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATC
AAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTA
TTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGAT
TTTCGCTTTGGTGCAAAATTGACGtttggTTTTGAAACAGCTGTCCCAGA
CTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtc
aaaatattttccactTTCAATCACAACAAGGAATGGTTGCTGGAGTATCT
CGACTTTCTGTCAAATTTCATTACTCGCCACCTGGCAAATTAGTTTACAT
CGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACT
GTCTTCTTCCAACAACGCCTACAACAACAACCACTACGACCACAACAACT
ACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACC
CGAAGTAACAACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGGCCA
CCACAGAACAACCCGAGGCCACCACAGAACAACCCGAAGCCACCACAGAA
CAACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGA
AGTAACCACGGAAAAACCCGAAGTCACAACGGAAGAACCCGAGGTAACTA
CGGAAGAACCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCGA
AGAAGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaaCACGT
TTTTGTTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACG
CACTCACTCGATCAGTTAACGGTCaatacaattcaaaattcattttaaat
ttgGGAGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGT
TGTACAGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTA
TTATAGATGGagggaaaactttcaaaataacaGGTGGCTTCTCACAAAGA
AGAATTGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGA
AGCAACAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTG
ACTTTGGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAG
CAAGGAAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCG
CTTTGGTGCAAAATTGACGtttggTTTTGAAACAGCTGTCCCAGACTTTC
ACGCATGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaat
attttccactTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACT
TTCTGTCAAATTTCATTACTCGCCACCTGGCAAATTAGTTTACATCGCTT
TTGGGGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTT
CTTCCAACAACGCCTACAACAACAACCACTACGACCACAACAACTACAGA
AGAACCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAG
TAACAACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGGCCACCACA
GAACAACCCGAGGCCACCACAGAACAACCCGAAGCCACCACAGAACAACC
CGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAAGTAA
CCACGGAAAAACCCGAAGTCACAACGGAAGAACCCGAGGTAACTACGGAA
GAACCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCGAAGAAG
ACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaaCACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCaatacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGagggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGtttggTTTTGAAACAGCTGTCCCAGACTTTCACGCA
TGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatatttt
ccactTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCTG
TCAAATTTCATTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGGG
GATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTCC
AACAACGCCTACAACAACAACCACTACGACCACAACAACTACAGAAGAAC
CCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGTAACA
ACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGGCCACCACAGAACA
ACCCGAGGCCACCACAGAACAACCCGAAGCCACCACAGAACAACCCGAGG
CCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAAGTAACCACG
GAAAAACCCGAAGTCACAACGGAAGAACCCGAGGTAACTACGGAAGAACC
CGAGCAAGCCACGGAATCAACACCTACGACAACCACTCGAAGAAGACCTA
TCATTGCCGTCTTAGAGGATTTCGAAGtgaattaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12584MSTRG.12584Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12584.4.p1.exon1MSTRG.12584.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12584.4.p1.exon2MSTRG.12584.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12584.4.p1.exon3MSTRG.12584.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12584.4.p1MSTRG.12584.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:1001968..1004388 +