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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000095_pilon:801710..810509+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12565.1.p1 ID=MSTRG.12565.1.p1|Name=MSTRG.12565.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8800bp|location=Sequence derived from alignment at sc0000095_pilon:801710..810509+ (Clytia hemisphaerica_ch_hm2_pilon)
aattttagatcatcgaaacattacgtcatattCGaaaaaaaTCATAGTGT
AAGCTATACATTAAATTGAAGTGTAGAAAGGGCTTtatgaaaattgattt
atttacGGCACCGATTTTCAGTACCTTCTCTCAAGTCCTTATCCAAGATG
GTGGGTAATATTTATAATTTTGGAATAGTGGAAACCCTTCGCATATCTTA
GTTTATCTTGTACATCTGGTAATAAACGTTAATGGAATAGATTGTGTTTG
CTTTTCACATCATTGGTGATCATGATTATGGTCTGATTTGGAATCTGAGA
GTTTATCGTTTTTCTTAATTCAGGTCAATATCCCAAAGACGAGGAAGACC
TTTTGCAAGGCAAAATGTTGCCGAAGACATACACTTCATAAGGTCACTCA
GTACAAGGCTGGAAAGGCATCATTATACGCCCAAGGTAATAAAAAACTGT
CTGTCTGGCTAGATTGCAATTTGAAGAtatatgtttttcattttttttta
cccattccagggtcaaattgaaactattttggtggcaatcaaacctaatt
catcttgtagagcttcaaaaaagaaaaaaaacgaggGGTCGtacacctcc
taatgataagcggttccggagatattgagattttggttcctccaaaatag
cacctttttagacatttgaggttgacaatttagcccaCAAATGGCCTATA
AAAGGGCACTGAAATATACACTATTTGATggttttccaatttcaaaatcc
aataaaaaaaacccatatatcttcattttgactgcagacttttatcaaat
tctttttgtaatggcttgctaTCACTTcgaggaagaaatgaaaagacatt
tttttgaaaaagaagacattgcattgcaaaaacaatcaaaaacgttataa
agcggaagttaaaattgctgaacGTCTACCTATCTTTGCAAtcaaagcgc
tgcggaggaaaaattcaccatggcatataaataactgttttaggctaaaa
aagggtctCTTTAattcacgtgcgtttggtttgggaacgcgaaacacgaa
cgcaaactacccatgtctaaacttttcaatatatctccagaactaacaga
ttttttgaaattctgtaaaaaggtctaagttcctgaatagttttactatg
ttctatgaaaaaatcataagcatcagtaaaatactcgttcatctatttaa
cattgaagacaaaaatttgcgaagaaaaataaaccttgagcacaaaaaat
gcttttttaaacacttttttccaccgaaaaacaaataacttttacagact
taccttccccaaacattgaagaagcctctactaattaaagtaaatgagat
aagataaagataaaaccttaaaatcaaccagaatttacaacctttcgtcc
aaagcaaaagacgtgcttttctcgccgccattttgtttgcgaatgagaat
tctagagaattccattcgtttccagctcccgcggtcttttttcatccaat
cagatcgcgcgatttcactttcgctttctctagtccaataagactgcggg
atttggtCATGTGAcatttctattaaaaaacccgcgcgaaatacaggggg
tcacaaatagaaatacagggggtcacactactggctacaggaactgaaag
caagcaactaaggccaatatttttggtttttctgaaggacaaaaggtata
ggaagcttttctgaaagagggataaggctgggacaacctatttaaaagat
atggacataaaaaaggcacttttttgggtgataattaagattttacttag
aaactttaattctcttacccccgtctcgggcccccctgatatgagcaagg
gaaccatgatggccacccctactgaaaatttcagatcaaaacaaacaagg
aattaattcctgtaactcgaagaaaattggaaaaagctggtttttgactg
tttttgatcctaaagtgctattttttggtaaaagctatgcaatttatgtt
tggatttctagaaagcttacccattcattgttaatacagtttttatttga
aagtaatctcttcatggaataaaaagatatagtcaaatcttgtagggtca
tttttcaaaatttttttgccaaattcgattttcgcatttccccattttac
cctacgcaaacgcacgtgcaTTCTAGTCGTCATTTTCAGGCTGGAAATGT
TTGCCAAAGTACGAAAAGTAAAACATAATAACTtcaatgaaagaattaat
ttcagagagtagcaccattggatttctcaggtattttctgataaatatga
aaagtttcactttctgaacattttttcctctgCAGCTGTTTGAAATCATA
GATGagttatgaatttttttgtgtccTGCAGatctaatatttctaaaaat
ggccttagTTGGAACAAATATTTAGACAAAAGtgtagaatattacacctg
gatattatatatggttggaaagctaaaagaaagctctaaattactcaaaa
gtaattaattttatagctaAACTACAAAAAGAACAATTGCTTGTTAAAGT
TggacctaaaattgaagattttcatgagCATCAAATAAGAAACAAGCAAT
CCCGGAATGGCTATCTGGAAAGTCTGGAAATAGCATACCTGTCAGTCTGG
AAATAGAGAAATATTTCTCTTTTATTCGCTTTATCTATCcattcttgaaa
ttttcagtgtgAACCCTTGTGAACACCCTCATACTGGGAATAACCTGCAC
TGTGTCACTGTTAACTTTATTATCTTTGTTAAAGACAACCTTagaatttt
ggtttttgcaCGCTTTTTTACTTGTATATACTTTgtcacttttaaaaaaa
gtctggAAAATATTAGTGTTTTTTACCTAAAGTCTGGAAAAATTTGGCTT
TAAgcaaaaatatcttgaaaaaattgaggtttttgggcaaaagtctggaa
ttttgaaagtttcctaCCCGTGGTAACCCTGTTTGTATAATTTGTACAac
acatatttttcaacaaaagatttcCCATAACTCACATAGTTAAAAAAGGG
GGTGGGttgagaattttactgaatttaaaagaatgggggcttgtgaaaat
ttcaaataaaaggggtggcttgggcaaaaaataggggggttaatttttaa
ggggggCTTGGAAGATTTGGCAATTTGCAAAAGagtgttttccattcatt
tttaaaactctgtacatcataaaaatcattaaagcaccgataacatttta
tacttttatttttgaaactttagccATCCATTGGCCATTGTCTAAATTAG
GAACGTGAAACTATTCAGAAATTCTTAGTTTTCTTCCACACAGCCACAGG
CAAAATCGCAACAAAAACAAGATGTATGTTATTGTTACCAAGCTAGCGTC
TAGGTGCAAAGgtcctgggggctaacaaaaattcataaatctttgggggg
acttaaaacttaaggggacctaaacccaggctgacgctttGTAAAGAGTC
TTATTTCGTTGGGcaagcttagaatttcttttgatacagtttataaaaga
aatcaaaagacattAACGACAATTGCTTGGGTCTATAAATTATTTGAAGT
TACTGAATTTGGGCCAAGTGCGTTTCCCATGTTCGACTATATAACAATAA
GGGAGACACCATCCTGCTATGAAACAGgaatacttatgtaaaaaaaacac
accctttaaatgcattttatttcaaaaatgaataaaaatatccttATATA
ATGCTACActtaataaattttcatttcaggTAAAAGAAGATACGATCGAA
AACAATCAGGATATGGAGGTCAAACCAAACCTGTTTTCCACAAAAAGGTA
ATCAAAATTGTCACTTGCGTAGGGTTCTgctttaacattttctttttata
tctaCTTGGCATTATACCTGGCCTTGTagaccacagatctgtaaagccta
AAGGGCTAGATAAGCAACTTTTAGCTTTTTAGAAGCAAAAATTTGGCTTT
CTAAATTTcatgccgatggataggatctagcattttatttgttttcggAG
TGCGAGATCAAAAAAGTAGGTGACAAATGTTATTttgcatctctcaaacc
agtgaactTGCTTGTTGTCgtgtgatttctttggtaggaaatcctaccaa
aatttgcttcactttttgataaaggCCATTAGATGATGCTTCAGACTGGA
ATGAGAAtgatttataataataataatgatagtAATGCTATACAAGctcg
caggccaccgtgcgagcacatgggcctctatgaactgctctttgttcggt
ttacaattttcttgaggtagagttttttcctagggctccccctgactttg
aatttgaGGTTTGCGTCTTTTATTGAAGTATTCATTTCTTGGGCTTTGat
acaccactctttgattgtcttcctttcaTTTTTCGTAAGATCTTCTGTCA
CCCGGAAGGGTAATTCTCCTTTGGTGGTTGCCTTTAACACTGTATTTTTG
GCCCAGCGATAGCAtatgggcctttcattagcccTTTGCTGTTACGCTAG
GGTCTCCCCTGTGTTCGCGCATCACACGGGTTTTATGGTTTACAGGCTAA
AAGCTTCCATATATTCAATATGAACCCGACTGGATGTATTCGTGTTTAAA
TGAAttatatattatgttatatatatattatactACGGTGTTTGCAAATT
ACTACTGCgttattatgttgtcctattattattctgttattatgttatgt
taGATATAATACAGTCAGGAGTACATTCAACATGAACCCGAATGGATGTA
TTTGACTGGAAATGATAACAAAGACAGGATCCAATTTAATTCCAGAGGAA
GTTAATCAAAAGATAGCTGATGACTACTGCGTccaaaaaaacacaacaaa
ctTATGTTGAAGCCTGGTTTCTTCATTCATATGCCAACATGACACAACTA
TTTGATTCATATTAAGATTTGCTCGAGTATTAAGCGAGCAATCAATAACT
AGCAGCTACCGCTACagtacaacttttttacaagaaaaacaagACAAATC
AATATGTGAATATTAAATGGTTGGTGACtggaaataaaatttccaaaaaa
tcaatgGTGTTTAATCATGCTGGCCGATGATTATGATCTCCATGCAAGAT
TTTACTACCATTGTTTACATTGACGTTATTCAACATTGCATTGTGCGCCA
TCCATGCCCCATGACGGCATGAAACACCATGAAACTTATTGGACTTTTAT
ACGATACAGTCTGTACAGTCTGATTATCATATCAGCTTTTTATCACAGAT
GTATATATGTATTGTATGTAAATACTTATTGATATACAGTTAAACAAAAT
TGATGTATGCatggcaaaaacaaaacagagcaAACGTTGGATTGGTCAGG
TGAAGCTATAAGAGTCAAGCttttgaaagtttcaagtcaTATCATATCCA
ATCAAACAGAATGGACAATCAAATTGAATTGTAAATTTCCTGACGAAACT
CTATAAATTTGATTGCACTTTTGGTGTATCATTGAAGGTCTAAAGGTTCA
GGTGTAAATGGAATGCTTAAACGACCAAAGATATTTGAGATATGTGACCT
CCCGGATGTAGTGACTCGTTCGATTACCGATAACTTTACAGATTTTACTG
ATGACAGTCATTGTTTACCAATACCTAGATTGGTTTAAGCcacaatcaca
aataacttgtgtttgtCGTCCGACCGACAATTTCTGGAAAAATTCCTTTT
CAAAATATAACGGAGATATTGACAATTGAGGTTCCTATCCGTTGGTGCAT
GGATCTAGGTGGGTGTCTTCTCCCCCGTATattttttcttgagaagttgt
tcttcaaatttgttttcaaggttggctcaGCTCAAATGTTTTCAACTATG
GCTAAAAATTTTGGTAATTTCTcataaaaatattaatttcattaaaaagc
gtcagtttatttttcatgaatcctATTAGAAGTTTTGCGACGCATTTTCT
TGCTTCAAGTAACCGATATAGTGCAtggcagcattaatctttgatacaca
tttcgGTGGGATGCTAATGTGACTAACTGTTTGTGGGAAATCTTTTGACT
ACCTTTCTTAATATACTATTAATTGAAATCTTAAACAAAATTAGAATGcc
ataatttttttgtgaattctGTCCAAATTGTCAACATTGAAATTTCTCGG
TAGATATGTGAGATCATCGTCTAATAAATGTTGGCTATTTTcaacaaata
aaacaatatgattaatatttaatgaaaaataaaaggatTGTTTATTATGG
TGCGTTTTGTAActataattcaatttttataatttttttaagcgTAGTTT
ATGCAGCTGTATATATGTAGTATTATTCTTTTGGATTGTCAGTTCTATGA
GTTCCCTTGTTAAAGATCTACTATGAGATATAAACTCCAAACACCCTCAT
CCAAATAATTATCTCTTCAAaggaaaaacattattttagtAGTTTTTTCC
CTGTGTATACCAAACTAGCAAAATAATAATTGAATTCCTTTTATAAGTGC
CTTCTATCAttagttcaaattttaaacCTCTATACATATGGTAGTTGTAA
CAggaaaaatagtacaaaaagcGTCCAATATCAGATTAAGCGTAAACAAC
ATGGAATAAGAAGACaatcgctgggccttcacgccgctAAGGCGTCTTGT
TGTCTTCTTTGTTTGCAAATCAGACTTTTATTGGTTGATAGCGTTTCTCA
TCTTCTctttccttcgaaaattttccgattctttgaatttcttcaatttt
tatattcTTTAAGTGTAGCATCATaggtaaaaaattttcatgaagatATT
CTTTGTCGTAGATTTTCgttgactcctctgaatcttcagtggattcctca
acaccatgaagaattagattgcatgccgtggattgaatctgtcgttcctc
ctgtttttcTCTTCAAAATGCATTTTCTATGTTCTTCTCAATTTGCCTCG
GCGCGACTGCTGCGTAGCTTCGTGATTTCTACGTCATGGGCTTTCATTAT
GTTCTCACAAGCTTTTATCTCCTTTCGGAATCCTGAAACTGTTGATGTTT
CACATGAATTGACCCGTTCCAACAAAATGCTCATAGTaacatgaaatttt
caattgggaatatctttccaaaactgtTACCACAAGAGCTAAAAGTAACA
AACattagacttgagtgtctttGGTGTCACTGtagtatgaaaatcttttg
aaggcacgtggtggcaaggtggtttttttgtggttgaagtttgaaaattt
ccggtgtgaacattcaatttcttatataCAACacatcttttgcatctttc
tcacaacttgaaacgtcataacaacATATAGTTGGCAATTAAatagaatc
tgactctcacaggaacaTTTTTAACCACTTTTGGGAAtcggatgagtgat
tttcgataaaaacgcatttaaaatgttaaaaaaatcatttaatcagagaa
ggagagtgaacaataatatcaataATGCGGGCATAGCTAGAACCaggaga
aatcagcaaaaatcaggtacttgtatatccagtgtataatgaATCCTTGA
TTTGATGGTTGGTCTGACTTGTGCCGTGATCATTGTCtctatattttttc
aaaactatttgaCACTCATAGTGTCAGTCttggtttaggtcccaggcaaa
aattaggtccccctgaATTTTCAGCTTCATCTGctttaatttgagtaatt
gaagccaaccatAAAGAttaagtactcttaggtgccaaataaacgggggg
acctaattactggggggttggaaaatggacctttaaaaaccctaaaaagg
ttcaaaatagactaaatttaggctttttagaatAATACAgggaactttcc
ttttggtagctagaaattttcaaaaaaattaataaacgagggtcttaata
aggtccgggggttgggaaaaaatcgaaaaattaacaagcggggggggcct
gtttatttggcacctaagagtattcagtttacccccccccccctcgacTA
GCAGGGAATTGACGCTATGACACTTCAAAGACTATTCAAAGATTTCTTAA
CTATActtaaattttttcagaaaagctAAGTTACTTGATCAATTCTTTTA
TAGGCTAAGACCACCAAGAAAGTCGTCTTGAGAATGGAATGTACAACGTG
CAAATACAGAAAGCAAGTTCCATTGAAGCGATGTAAACACTTTGAATTAG
GTGGTGACAAGAAGAGGAAGGTAAGTGAAGTCTTCTCTACTTTTCTCCTT
ATTTTACTTGTTGGTTCGTCAAAAGTTAAAGAAACAAGGTTTCCAGACTG
ACTTTAACACAGATTATTTCAATTTAGCCAAATGTGTTTAGGCATCCACC
ATTAGAGAAACGTCATGTTGCTATTTTTATCCATCTTAAACAGCTCCTGT
TGATCGTTATAAGGAGTGCACAAAAATATGATCAGACAAAGATTGAGCTA
CTTGCAGAGCAACTAGAGCCATAGAAACTCAAAAACTTTGATAGcttctt
ttttgcttttcaaattgacaattttttgtcgaaccatatttttttCGGGC
AAAATAATATTCGTTGGTTGctcattttcttctttgatcttttttttcag
ggacaaatgattcaattttaaaTTGGAAATACACTTTacacaagaaattt
ttctcgTCTTCGTCCATCTTCCTGTATATTCCCATTACCCTTTCATGCCA
GATCTTTGTTTGACGGTCCGAAAGTATGTTCCAAAAAATTAGCttcaaat
Coding sequence (CDS) from alignment at sc0000095_pilon:801710..810509+ >MSTRG.12565.1.p1 ID=MSTRG.12565.1.p1|Name=MSTRG.12565.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1605bp|location=Sequence derived from alignment at sc0000095_pilon:801710..810509+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTCAATATCCCAAAGACGAGGAAGACCTTTTGCAAGGCAAAATGTTG
CCGAAGACATACACTTCATAAGGTCACTCAGTACAAGGCTGGAAAGGCAT
CATTATACGCCCAAGgTAAAAGAAGATACGATCGAAAACAATCAGGATAT
GGAGGTCAAACCAAACCTGTTTTCCACAAAAAGGCTAAGACCACCAAGAA
AGTCGTCTTGAGAATGGAATGTACAACGTGCAAATACAGAAAGCAAGTTC
CATTGAAGCGATGTAAACACTTTGAATTAGGTGGTGACAAGAAGAGGAAG
ggacaaatgattcaattttaaATGGTCAATATCCCAAAGACGAGGAAGAC
CTTTTGCAAGGCAAAATGTTGCCGAAGACATACACTTCATAAGGTCACTC
AGTACAAGGCTGGAAAGGCATCATTATACGCCCAAGgTAAAAGAAGATAC
GATCGAAAACAATCAGGATATGGAGGTCAAACCAAACCTGTTTTCCACAA
AAAGGCTAAGACCACCAAGAAAGTCGTCTTGAGAATGGAATGTACAACGT
GCAAATACAGAAAGCAAGTTCCATTGAAGCGATGTAAACACTTTGAATTA
GGTGGTGACAAGAAGAGGAAGggacaaatgattcaattttaaATGGTCAA
TATCCCAAAGACGAGGAAGACCTTTTGCAAGGCAAAATGTTGCCGAAGAC
ATACACTTCATAAGGTCACTCAGTACAAGGCTGGAAAGGCATCATTATAC
GCCCAAGgTAAAAGAAGATACGATCGAAAACAATCAGGATATGGAGGTCA
AACCAAACCTGTTTTCCACAAAAAGGCTAAGACCACCAAGAAAGTCGTCT
TGAGAATGGAATGTACAACGTGCAAATACAGAAAGCAAGTTCCATTGAAG
CGATGTAAACACTTTGAATTAGGTGGTGACAAGAAGAGGAAGggacaaat
gattcaattttaaATGGTCAATATCCCAAAGACGAGGAAGACCTTTTGCA
AGGCAAAATGTTGCCGAAGACATACACTTCATAAGGTCACTCAGTACAAG
GCTGGAAAGGCATCATTATACGCCCAAGgTAAAAGAAGATACGATCGAAA
ACAATCAGGATATGGAGGTCAAACCAAACCTGTTTTCCACAAAAAGGCTA
AGACCACCAAGAAAGTCGTCTTGAGAATGGAATGTACAACGTGCAAATAC
AGAAAGCAAGTTCCATTGAAGCGATGTAAACACTTTGAATTAGGTGGTGA
CAAGAAGAGGAAGggacaaatgattcaattttaaATGGTCAATATCCCAA
AGACGAGGAAGACCTTTTGCAAGGCAAAATGTTGCCGAAGACATACACTT
CATAAGGTCACTCAGTACAAGGCTGGAAAGGCATCATTATACGCCCAAGg
TAAAAGAAGATACGATCGAAAACAATCAGGATATGGAGGTCAAACCAAAC
CTGTTTTCCACAAAAAGGCTAAGACCACCAAGAAAGTCGTCTTGAGAATG
GAATGTACAACGTGCAAATACAGAAAGCAAGTTCCATTGAAGCGATGTAA
ACACTTTGAATTAGGTGGTGACAAGAAGAGGAAGggacaaatgattcaat
tttaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000095_pilon | genome | sc0000095_pilon:801710..810509 + |
|
