MSTRG.1256.1.p1 (mRNA) -

Overview
NameMSTRG.1256.1.p1
Unique NameMSTRG.1256.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:866159..868940-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1256.1.p1 ID=MSTRG.1256.1.p1|Name=MSTRG.1256.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2782bp|location=Sequence derived from alignment at sc0000006_pilon:866159..868940- (Clytia hemisphaerica_ch_hm2_pilon)
ACACAAGCCCTTGTCGAAGTAATTATTTAAGCTATTCCCAAAGGAATTTA
GTGGATATTATCTAAAGAAATTCTCAAGCGAGATCATATTAGTCCCATGA
GATTTCTTCAACCCCATAAAAAGCCACTTTTTTCAACTAAAAATCACACT
CGAGTTGCGTTGCAGACTTAGTTGTGAGGTGCAACTGACTGTGAAGTAAA
AAGTCAAAACATTTTCAAAGATCTTCGAAATGTCTTCAAATGTTGTTTTT
GATTTTTCCGGAAAAGTTGTGTTGGTAACAGGTTAGTGTAGTTTGTAATT
CATAATTTATAAAAGTTCTTTCCGTTAAGCAGTTTGGACAATCTTCCAAT
ATAAATACAAAGCGTCTTTTTGTAGCAAAAAAGATTAAATCATTTTGCCT
GAACTCAATTTCATTTCCACCTTTATAAGATTTTACGAATTAGTTCCTTA
AGAATTGGCTTCTATTTGCCTGGAATTAGACTGGAGTCGTTTATAATGTG
TGTGATACAGTTATTTCTATGTCTGAATTAGTGATCTAGCATGCTAGAAT
AGCCTGGAATTGGTTTTAGACTACGTGACCTCGTGCTGACATATCTTCAA
TTTTTTGACTCAGGTGCTGCCTCAGGGATCGGTCAGGGTACAGCTTACAT
GTTCGCAAAATGTGGCGCCCGACTCGTTGTCACAGATCGCGACGAAACCA
ACTTGAAAGAAACGGCCAAGAAATGTGAAGAGATGAGTAAACAGAAGCCA
CTGGTCATCGTTGGTGATTTAACCGTTCAAAGTGATCTTGAGAATATCAT
TAATACCACAATGGAGACATGCAAACAACTTGATGTATTGGTAAACAATG
CAGGAGACTTGGTGATGGCTACTTGTCTCCAGACCTCCACAGAAGATTTC
GATAAAATAATGAATATTAACGTCAGGTATGTATTACTTTAGGCGTACAA
ACTTTCGCGAGCAGCAACTTTCGCGAGGTCGAAAAAATCGCGAAATTTGC
GACATTTACTTTCGCAAATGTGAGTAATTAATAAGATGCCGAAATTTTGA
TATTTATTACGATTTCGAGGCTTTATAGATTTCCAATTCTTTTGAGAATT
TTTCGCGAGCACAAACTTTCGCGAATTGCCCTGTTATGAATTTTCAAACA
CATTCACTTTCGTGAAAAAGGCCAAAATTCGCAAAAATCGTGAAAGTTTC
TGCTCGCGAAAGTTTGTACGCCTAAAGTATCTTGAATTAATCTTTTCAAC
TGATTAGGATTTACCTCCAATTTTAAATTTTTCTAATTAAATTTTAACGG
AAATGGCTCGTTTTAGTTTTTTTTTTGGTTGCTTTCCCAGTTCATGCTTA
GTTTCAGGGCTAGGTTGCTAAATGCTTAATGCTAAGATGCTTAATTTTTA
TCGCCTCAGGAAAATATTTTGACTGGTACGCGACATTGATCTAATTAATT
GATTTATATAATTTATATAATTTACTTTTTTTTAGATCGGTTTTCCAGTT
GACAAAGATGGCTATTCCACATTTGAAGAAAACTCGAGGTAAGCTAGGCA
TGATACAATCTATCTTTTGCAGGAGCAATCTGTCAGAGATGGCATCCAAA
ATATTTTCCTTACAAACAGTCTTGATTTATATTATGAACGATGATGCTTT
TGACTAAGCTTTAACTGGCCAACATTAATATTTCAGGAAACATTGTAAAT
GTCTCAACCTTGGGAAGTTCGCGCCCAGTAAGTTAAACATTTTTATTTTC
CCTTTGGATGAAATGATTCCGAGATCAAATTTTCCATGGCTGTATTTGGA
CAGTTTAAGAAAAGTTGATTCGTTGGGATGAACTAATTACTAAAAGGATG
TCCCTTCCTTATCCAGTCTTTGAACTCCTCAAACTGAAAAAAAGTATTAA
TATTAATATTATTAATATATATACTAAATATTTCCCACTCTAAAGAGTGT
TGTCGTAAAAAGTCTTTTCTTTTCTTCATAGCAAATTGGTTTCAGCGCTT
ATTGCATGAGCAAAGCAGCATTAGATCAATTCACAAGAGCTGCTGCTATC
GAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGTATCAT
TGCCACTGAGAAATGCTTAAACAGTACTGATGCAAACGTTAAGGTGCGTC
ATTTGTATTTGAAATAATTTTCCAAGAAATTGAAAGTTGAGACACCATGC
TGAACTATTTTTGTCAATACATGTTGTGGTTTTAGTTTATCTTTGCGGTT
CTTTTCCACCGGAATTTACTTATTTTTTACTTTTCTCAGTCCTTTCAGGC
TGCACGAGGTTGCTAAGCTTCAAAATTTAGAACATCATCATGGCTTAATA
TAAAATTTAAAAAAGGAAAGGAAAATCTTTATAGGTTTATGTTATGATCG
CAATTTCTCTCTATGAAAAGTTTTATTTTTTGGGAATTTTACTAGTTGAA
TACCGTTTCCCTGAGTTAGCATTATTTTTCGTTATCAGACTGCTATTGAG
AGAAGCAAAACGACACACGCTTTGGGACGTGCTGGTACGGTTGACGAAGT
TGCTGCCGCCATTTTGTTTCTAGCGTCAGGAGCTGCATCGTACATCACAG
GTGTTACGATGCCAATCGACGGAGGTCGTGGCGACATGATCCCTGTTTGA
AATATTATTTAGTGTAATTTTAATTGTTAATGGGAATTTTTTGATTGCTA
TAACGATGACAATAAAATACAAGGTTCAGTTGAATTATCGACCGCCGGAG
GCGGTTTCTTTCATAGTGGTACGCTAATCTCG

Coding sequence (CDS) from alignment at sc0000006_pilon:866159..868940-

>MSTRG.1256.1.p1 ID=MSTRG.1256.1.p1|Name=MSTRG.1256.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4698bp|location=Sequence derived from alignment at sc0000006_pilon:866159..868940- (Clytia hemisphaerica_ch_hm2_pilon)
ACTGCTATTGAGAGAAGCAAAACGACACACGCTTTGGGACGTGCTGGTAC
GGTTGACGAAGTTGCTGCCGCCATTTTGTTTCTAGCGTCAGGAGCTGCAT
CGTACATCACAGGTGTTACGATGCCAATCGACGGAGGTCGTGGCGACATG
ATCCCTGTTTGACAAATTGGTTTCAGCGCTTATTGCATGAGCAAAGCAGC
ATTAGATCAATTCACAAGAGCTGCTGCTATCGAATTAGGAGCTGATCAAG
TTCGTGTCAATTGCGTCAACCCAAGTATCATTGCCACTGAGAAATGCTTA
AACAGTACTGATGCAAACGTTAAGGAAACATTGTAAATGTCTCAACCTTG
GGAAGTTCGCGCCCAATCGGTTTTCCAGTTGACAAAGATGGCTATTCCAC
ATTTGAAGAAAACTCGAGGTGCTGCCTCAGGGATCGGTCAGGGTACAGCT
TACATGTTCGCAAAATGTGGCGCCCGACTCGTTGTCACAGATCGCGACGA
AACCAACTTGAAAGAAACGGCCAAGAAATGTGAAGAGATGAGTAAACAGA
AGCCACTGGTCATCGTTGGTGATTTAACCGTTCAAAGTGATCTTGAGAAT
ATCATTAATACCACAATGGAGACATGCAAACAACTTGATGTATTGGTAAA
CAATGCAGGAGACTTGGTGATGGCTACTTGTCTCCAGACCTCCACAGAAG
ATTTCGATAAAATAATGAATATTAACGTCAGATGTCTTCAAATGTTGTTT
TTGATTTTTCCGGAAAAGTTGTGTTGGTAACAGACTGCTATTGAGAGAAG
CAAAACGACACACGCTTTGGGACGTGCTGGTACGGTTGACGAAGTTGCTG
CCGCCATTTTGTTTCTAGCGTCAGGAGCTGCATCGTACATCACAGGTGTT
ACGATGCCAATCGACGGAGGTCGTGGCGACATGATCCCTGTTTGACAAAT
TGGTTTCAGCGCTTATTGCATGAGCAAAGCAGCATTAGATCAATTCACAA
GAGCTGCTGCTATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTC
AACCCAAGTATCATTGCCACTGAGAAATGCTTAAACAGTACTGATGCAAA
CGTTAAGGAAACATTGTAAATGTCTCAACCTTGGGAAGTTCGCGCCCAAT
CGGTTTTCCAGTTGACAAAGATGGCTATTCCACATTTGAAGAAAACTCGA
GGTGCTGCCTCAGGGATCGGTCAGGGTACAGCTTACATGTTCGCAAAATG
TGGCGCCCGACTCGTTGTCACAGATCGCGACGAAACCAACTTGAAAGAAA
CGGCCAAGAAATGTGAAGAGATGAGTAAACAGAAGCCACTGGTCATCGTT
GGTGATTTAACCGTTCAAAGTGATCTTGAGAATATCATTAATACCACAAT
GGAGACATGCAAACAACTTGATGTATTGGTAAACAATGCAGGAGACTTGG
TGATGGCTACTTGTCTCCAGACCTCCACAGAAGATTTCGATAAAATAATG
AATATTAACGTCAGATGTCTTCAAATGTTGTTTTTGATTTTTCCGGAAAA
GTTGTGTTGGTAACAGACTGCTATTGAGAGAAGCAAAACGACACACGCTT
TGGGACGTGCTGGTACGGTTGACGAAGTTGCTGCCGCCATTTTGTTTCTA
GCGTCAGGAGCTGCATCGTACATCACAGGTGTTACGATGCCAATCGACGG
AGGTCGTGGCGACATGATCCCTGTTTGACAAATTGGTTTCAGCGCTTATT
GCATGAGCAAAGCAGCATTAGATCAATTCACAAGAGCTGCTGCTATCGAA
TTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGTATCATTGC
CACTGAGAAATGCTTAAACAGTACTGATGCAAACGTTAAGGAAACATTGT
AAATGTCTCAACCTTGGGAAGTTCGCGCCCAATCGGTTTTCCAGTTGACA
AAGATGGCTATTCCACATTTGAAGAAAACTCGAGGTGCTGCCTCAGGGAT
CGGTCAGGGTACAGCTTACATGTTCGCAAAATGTGGCGCCCGACTCGTTG
TCACAGATCGCGACGAAACCAACTTGAAAGAAACGGCCAAGAAATGTGAA
GAGATGAGTAAACAGAAGCCACTGGTCATCGTTGGTGATTTAACCGTTCA
AAGTGATCTTGAGAATATCATTAATACCACAATGGAGACATGCAAACAAC
TTGATGTATTGGTAAACAATGCAGGAGACTTGGTGATGGCTACTTGTCTC
CAGACCTCCACAGAAGATTTCGATAAAATAATGAATATTAACGTCAGATG
TCTTCAAATGTTGTTTTTGATTTTTCCGGAAAAGTTGTGTTGGTAACAGA
CTGCTATTGAGAGAAGCAAAACGACACACGCTTTGGGACGTGCTGGTACG
GTTGACGAAGTTGCTGCCGCCATTTTGTTTCTAGCGTCAGGAGCTGCATC
GTACATCACAGGTGTTACGATGCCAATCGACGGAGGTCGTGGCGACATGA
TCCCTGTTTGACAAATTGGTTTCAGCGCTTATTGCATGAGCAAAGCAGCA
TTAGATCAATTCACAAGAGCTGCTGCTATCGAATTAGGAGCTGATCAAGT
TCGTGTCAATTGCGTCAACCCAAGTATCATTGCCACTGAGAAATGCTTAA
ACAGTACTGATGCAAACGTTAAGGAAACATTGTAAATGTCTCAACCTTGG
GAAGTTCGCGCCCAATCGGTTTTCCAGTTGACAAAGATGGCTATTCCACA
TTTGAAGAAAACTCGAGGTGCTGCCTCAGGGATCGGTCAGGGTACAGCTT
ACATGTTCGCAAAATGTGGCGCCCGACTCGTTGTCACAGATCGCGACGAA
ACCAACTTGAAAGAAACGGCCAAGAAATGTGAAGAGATGAGTAAACAGAA
GCCACTGGTCATCGTTGGTGATTTAACCGTTCAAAGTGATCTTGAGAATA
TCATTAATACCACAATGGAGACATGCAAACAACTTGATGTATTGGTAAAC
AATGCAGGAGACTTGGTGATGGCTACTTGTCTCCAGACCTCCACAGAAGA
TTTCGATAAAATAATGAATATTAACGTCAGATGTCTTCAAATGTTGTTTT
TGATTTTTCCGGAAAAGTTGTGTTGGTAACAGACTGCTATTGAGAGAAGC
AAAACGACACACGCTTTGGGACGTGCTGGTACGGTTGACGAAGTTGCTGC
CGCCATTTTGTTTCTAGCGTCAGGAGCTGCATCGTACATCACAGGTGTTA
CGATGCCAATCGACGGAGGTCGTGGCGACATGATCCCTGTTTGACAAATT
GGTTTCAGCGCTTATTGCATGAGCAAAGCAGCATTAGATCAATTCACAAG
AGCTGCTGCTATCGAATTAGGAGCTGATCAAGTTCGTGTCAATTGCGTCA
ACCCAAGTATCATTGCCACTGAGAAATGCTTAAACAGTACTGATGCAAAC
GTTAAGGAAACATTGTAAATGTCTCAACCTTGGGAAGTTCGCGCCCAATC
GGTTTTCCAGTTGACAAAGATGGCTATTCCACATTTGAAGAAAACTCGAG
GTGCTGCCTCAGGGATCGGTCAGGGTACAGCTTACATGTTCGCAAAATGT
GGCGCCCGACTCGTTGTCACAGATCGCGACGAAACCAACTTGAAAGAAAC
GGCCAAGAAATGTGAAGAGATGAGTAAACAGAAGCCACTGGTCATCGTTG
GTGATTTAACCGTTCAAAGTGATCTTGAGAATATCATTAATACCACAATG
GAGACATGCAAACAACTTGATGTATTGGTAAACAATGCAGGAGACTTGGT
GATGGCTACTTGTCTCCAGACCTCCACAGAAGATTTCGATAAAATAATGA
ATATTAACGTCAGATGTCTTCAAATGTTGTTTTTGATTTTTCCGGAAAAG
TTGTGTTGGTAACAGACTGCTATTGAGAGAAGCAAAACGACACACGCTTT
GGGACGTGCTGGTACGGTTGACGAAGTTGCTGCCGCCATTTTGTTTCTAG
CGTCAGGAGCTGCATCGTACATCACAGGTGTTACGATGCCAATCGACGGA
GGTCGTGGCGACATGATCCCTGTTTGACAAATTGGTTTCAGCGCTTATTG
CATGAGCAAAGCAGCATTAGATCAATTCACAAGAGCTGCTGCTATCGAAT
TAGGAGCTGATCAAGTTCGTGTCAATTGCGTCAACCCAAGTATCATTGCC
ACTGAGAAATGCTTAAACAGTACTGATGCAAACGTTAAGGAAACATTGTA
AATGTCTCAACCTTGGGAAGTTCGCGCCCAATCGGTTTTCCAGTTGACAA
AGATGGCTATTCCACATTTGAAGAAAACTCGAGGTGCTGCCTCAGGGATC
GGTCAGGGTACAGCTTACATGTTCGCAAAATGTGGCGCCCGACTCGTTGT
CACAGATCGCGACGAAACCAACTTGAAAGAAACGGCCAAGAAATGTGAAG
AGATGAGTAAACAGAAGCCACTGGTCATCGTTGGTGATTTAACCGTTCAA
AGTGATCTTGAGAATATCATTAATACCACAATGGAGACATGCAAACAACT
TGATGTATTGGTAAACAATGCAGGAGACTTGGTGATGGCTACTTGTCTCC
AGACCTCCACAGAAGATTTCGATAAAATAATGAATATTAACGTCAGATGT
CTTCAAATGTTGTTTTTGATTTTTCCGGAAAAGTTGTGTTGGTAACAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1256MSTRG.1256Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1256.1.p1MSTRG.1256.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1256.1.p1.exon6MSTRG.1256.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1256.1.p1.exon5MSTRG.1256.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1256.1.p1.exon4MSTRG.1256.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1256.1.p1.exon3MSTRG.1256.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1256.1.p1.exon2MSTRG.1256.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1256.1.p1.exon1MSTRG.1256.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:866159..868940 -