MSTRG.12552.1.p1 (mRNA) -

Overview
NameMSTRG.12552.1.p1
Unique NameMSTRG.12552.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:624760..627520-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12552.1.p1 ID=MSTRG.12552.1.p1|Name=MSTRG.12552.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2761bp|location=Sequence derived from alignment at sc0000095_pilon:624760..627520- (Clytia hemisphaerica_ch_hm2_pilon)
TTTCAGCATTTTCTGAACGTACAACTTGGTACAAAGTACAACTTTACAAC AACCGCCCTACCAAATGGAGGTTCATCTACAATGATCACTCTCTCACCAA GTAAGATATTTTAAATCATCTCTTCTCCATCTTCGAGACATCTAAGCCCT CAATTTTTAAATTTGTTTTAGAGGCAGTTAGAGGGTCTATTTTGACAGCT ACTTTAAATTGGATGAATTGAATGAACGTTCTACTCGTTTACAGTTTACC CTTTAGAGATAAGTAATATCAGGAAAATCACTTACGACGTAAAGTTGCTG GTTTTTATACAGCCCCAGGCCATACATTCATATCTGCATATGCAGTGGAA GTTAAAGTTTCGGTTGGTTACTGTTAGCTAAAGCCATCTGAAAACGAACA CAAAAGAATTCATCAAAATTGATATCAACGAAACAAAGAGCAGATGAATG TCAATGTAAAAGGATCTCCGAAAATCCTGTGTAGCATGACTCGGCTGCAC TGCTTTTTTTAAGTCATTTATTTTTCATTTTAGCTGTTTGCGAATTAGAA GTAATAGAAGCAATATACTACAGTAAGCAAAAGACGTTTTTTTATTTTAT ACTAAAGGTTTTGTTTTTACATAAGTGTTCCCGTTTCATATCAGACACAT ATTTCATATTAGGGCAGTGTCTGTCTATTGATATATTATGCTGATATAAG CAAAAAATGTTTTCTCTTCCTCTTTTTGACCAATCTTGCTCCACATCTGT GTCAATCCAATGTGAAAAAACTTGTGAATTAAAATTGACGAGTAAGCAAA CGAAATCACTCTTATCTAAAAACAAAACCTTTAAGGGCTCTGACCATAGT GAATTTTTCATAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAAC CAACAAAACTATAGCATGTTATACATTTTCTATTAGACAAACTATTCCGG AATCTGAAAATTCAAAAATTGCATTGAAAAAGTTTGATGAAGAAGAAAAT GAAGACTTTTGCGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCGG CGGAGAAAAAACATTTTGAAAAATTTTTCGCAGTAAATGGTGTATCTTTT ACCGAACAATAAAAATTTTTGCGGAAAATTTTTGTAAATGCTTCTTTGTC TCGAAATCTTCAAAATAGTGGTTTTTCATCAATTTTTCATCTGGATTTTG CTTAAAAAAACAGTCATAACTTTTGACACATCTTTTTAGAAAAATTTTCC GCAAAATTTAAAATAGTTCAATTCTTTGCGGACAGTTTGAAAAAAGTTCG AAACAAAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATAAAAGAA GGTGATGCAACATATTATTAACGTCTTTTTAAAGTTCATAACGTCATTTT TGCAATCAAGTTCTTAATTACTCTTAAGGGATTTGATTAAAAAGCAATTT ATAAAGGCAATTCTTTGTTAAAAGTGTTAAAGAATCTAAAACATAACTTT TATGTTTCAGATACTAAAATCAATTTTCTGACTATGGTCAGAGCCCTTAA GTTAAATTCAGTCCGTCATCAAATTAATACAGAAGAGCGGACATTCTGAA AGACCGCCACCTTATAAGTAGCGGACAAAATATTTCCCCCGGTCGTTTTA CTAATATTTTCCTTAATGCTTTAGCAAAATGCCTTAGACTGTGATTTTAT GTTTGCAACAACCTAGTGGATTTATTTTAAAGATTTAGGGCCGTAACTCA GGACTCTTCGATTGCCATGCATCTCTGAAGTTTGTACAAAATAAATTCCA AACCTTCATGATGTTTTTTTTTCTCGTAGAAATTCAAAAGAAGGAGATCT TTGATGGATGCTCTTCTCCAGGTAGCTCGTTTTTCATATTCTATGTAACC CTGAAAAACAAAAAGAAACTTGAATTTAAATAAAGAGACATCACACTACA GGCATGAACATGATATAGTAAATCTTGTTTCGAAATACACAGAGAGAATA AAAAATCTTCTTGGTCTATAAGGGCTCTTTTTTATCCCCACTTATTCAGC AGAGTTTATTAGTCTGAAGCTTAAAGAAAAGGTTCCCGTTAAAGCACACT TACTACTACAATTCACTATGATTTAGCTCGATGAGGGCATTATGTAACAA CCGAATCATGTTCTCAAGAGAAGAAAACAAATCTTACAAGAAATACATCA AATCGAATTGAAAATGAATCTTTTTTTTCAGATTATGTATCGCGGAAAGC AATTGCGGGAGAAATTTGCAAACTGTTTCCTGACAATCCGCTGGCAAGAA TGGCTTATACTAAGAACAACTTGATAGAAGTTGGATGTAAGTTCAAGTTA AAACATTCAAATGATACAAAACAAACTGCTCGACTTTGATGAGGCCAAAC CACCAAACAAATTGATTGACAGTGATTTCTGACTCTAAGCGTCGAAGTTG TGTATGTTTGCCATGATATCGAGGAGAGAATATCTTAACATCTAATTGCC AAGCCTCCAAATCCCGCTAAAAATGAAAGATTTGAATCAACCAAAAGAAT TTTATTTAATTTGACAATATTATTTCTAATACTTTGTATAAAATTTGTAG TTAAATATTTTCACTATGTTAAAATAGATAGATAGGTGTCTGGTTCAATT GGTAGAACTCTAAAAATAATAAGAAAAAATTTCATCTTACCCTTGGAATG GTAGTTCTAGGAAAAGTTACAATTGATTTGGTGTTGCCTTTTTATCGAAT CCAAATGAGAG

Coding sequence (CDS) from alignment at sc0000095_pilon:624760..627520-

>MSTRG.12552.1.p1 ID=MSTRG.12552.1.p1|Name=MSTRG.12552.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1356bp|location=Sequence derived from alignment at sc0000095_pilon:624760..627520- (Clytia hemisphaerica_ch_hm2_pilon)
ATTATGTATCGCGGAAAGCAATTGCGGGAGAAATTTGCAAACTGTTTCCT
GACAATCCGCTGGCAAGAATGGCTTATACTAAGAACAACTTGATAGAAGT
TGGATGTAAGTTCAAGTTAAAACATTCAAATGATACAAAACAAACTGCTC
GACTTTGAAAATTCAAAAGAAGGAGATCTTTGATGGATGCTCTTCTCCAG
CTGTTTGCGAATTAGAAGTAATAGAAGCAATATACTACATTTCAGCATTT
TCTGAACGTACAACTTGGTACAAAGTACAACTTTACAACAACCGCCCTAC
CAAATGGAGGTTCATCTACAATGATCACTCTCTCACCAAATTATGTATCG
CGGAAAGCAATTGCGGGAGAAATTTGCAAACTGTTTCCTGACAATCCGCT
GGCAAGAATGGCTTATACTAAGAACAACTTGATAGAAGTTGGATGTAAGT
TCAAGTTAAAACATTCAAATGATACAAAACAAACTGCTCGACTTTGAAAA
TTCAAAAGAAGGAGATCTTTGATGGATGCTCTTCTCCAGCTGTTTGCGAA
TTAGAAGTAATAGAAGCAATATACTACATTTCAGCATTTTCTGAACGTAC
AACTTGGTACAAAGTACAACTTTACAACAACCGCCCTACCAAATGGAGGT
TCATCTACAATGATCACTCTCTCACCAAATTATGTATCGCGGAAAGCAAT
TGCGGGAGAAATTTGCAAACTGTTTCCTGACAATCCGCTGGCAAGAATGG
CTTATACTAAGAACAACTTGATAGAAGTTGGATGTAAGTTCAAGTTAAAA
CATTCAAATGATACAAAACAAACTGCTCGACTTTGAAAATTCAAAAGAAG
GAGATCTTTGATGGATGCTCTTCTCCAGCTGTTTGCGAATTAGAAGTAAT
AGAAGCAATATACTACATTTCAGCATTTTCTGAACGTACAACTTGGTACA
AAGTACAACTTTACAACAACCGCCCTACCAAATGGAGGTTCATCTACAAT
GATCACTCTCTCACCAAATTATGTATCGCGGAAAGCAATTGCGGGAGAAA
TTTGCAAACTGTTTCCTGACAATCCGCTGGCAAGAATGGCTTATACTAAG
AACAACTTGATAGAAGTTGGATGTAAGTTCAAGTTAAAACATTCAAATGA
TACAAAACAAACTGCTCGACTTTGAAAATTCAAAAGAAGGAGATCTTTGA
TGGATGCTCTTCTCCAGCTGTTTGCGAATTAGAAGTAATAGAAGCAATAT
ACTACATTTCAGCATTTTCTGAACGTACAACTTGGTACAAAGTACAACTT
TACAACAACCGCCCTACCAAATGGAGGTTCATCTACAATGATCACTCTCT
CACCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12552MSTRG.12552Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12552.1.p1MSTRG.12552.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12552.1.p1.exon4MSTRG.12552.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12552.1.p1.exon3MSTRG.12552.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12552.1.p1.exon2MSTRG.12552.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12552.1.p1.exon1MSTRG.12552.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:624760..627520 -