MSTRG.12541.1.p1 (mRNA) -

Overview


Name	MSTRG.12541.1.p1
Unique Name	MSTRG.12541.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:484597..488592+
coding sequence from alignment at sc0000095_pilon:484597..488592+

mRNA from alignment at sc0000095_pilon:484597..488592+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.12541.1.p1 ID=MSTRG.12541.1.p1|Name=MSTRG.12541.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3996bp|location=Sequence derived from alignment at sc0000095_pilon:484597..488592+ (Clytia hemisphaerica_ch_hm2_pilon)
TCAAGGGAACGTTCAATTTctaaaaatcaacaacaaaggTCGTTAAAAAG
ATGGACATGAAATtaactttgttttttgaataaaaggGAGAAGAAATGTG
GTAGATTTAAAATGAAATACAGTGGTACGTTACGTTTTGTTAGTGAGAGG
TTGACGTCGTGTAAAAATGTTGAACAAACGATTCACAAAGAGGACGGTTA
AAGCTAAAGTTTATAAAGGTAAGATACATTCTTTTCCTCTCTACATAAAG
TGGAGACCCATGTGATGAATTAAAAGCCTTTTGGGTTTGTTGTGAGAAGA
GTCCCTTCCATTGATTGcgataaaaatctttttaaagtctAACCTTTTAA
AGGGTTGCAAGATCGTGGAAATCAAAAATTCTCCTTTTCTAAGAAGAGTC
ACATTTTTGCTACAGACCTTTGCCTAGACCTAAAtttactgaaaatcaaa
caaaaattttcgcACATGCTTTCCTTTACCGCATAATGTTTTGAGAAAGT
ATTCTTctatccccggggggggggcactgggtttgcggactgacggtatg
tgcgggctaaaaattggcttttaaaattgcacccttacagtgcagcaaaa
atcagcgaaaatcatacccttagagtgcattttcccccaaattttcaatc
cctttcgtgcaaaaaatggtcaaaattctagcatttttggtcaaaatatc
tagatttttcaagaattttctgaaatttctacccttacagtgcatctcta
gtttttccgacccttacagtgcattttaaacatattggaaaaggtaccct
taggacccgcacatacccgtcggtccttttgcccagctgcccccccccGG
GCTTCTATCTCGATTCATGAAATGAATGATTGGTTGCCCGAGTTAATAAA
GTGAAGCATAACCCCCGATATCTCCTTGACCCTAATAGTTTTTTCAATTC
aaaatatcACTGATTTGTTTTATACTATTTGTTAATTTTACCAGCAAAAG
TGAGATATCACGGAAAATTACCCAAAATACCACGTGCTGAAGAGTTTAAG
GAAGAACTGAAAGAGATTGTGACAGatgtaagtttttttattgttgaaat
atttttcttggtgTATCATGATCATAATCAATCTTGAGCAGCGACTGTCT
GAAACGCTGAAGGGGGTAGCTTTTTTACAGGAAATAAATcttctgttttt
tttcattcgtGCCATTATTGTATTGAGTCACTCAGTATTATTTTTATACT
agatatagcttacactaaGTGCCACCTAatgataataaataaaatatatt
ataatatataaaatataagcaTAGGTTTGGTTACATGAAGAAATAAtatg
aagattttattttttaacaatgtaaagaatatatctaaataaataaaaat
gatgggttggttttaaaaatgacaatataaacaatccatccaaatAaaat
TGATGGGCTAAGCGGTTTTTCTATATGCAATAAATCTACATAAGtacaaa
tcacaacaatgactcctttacaactactttaaactgcatcccattaaacg
aACCCTACCCAATTTCTTCCTGGTTATCCCGTAAAATATATATAGggaaa
agattccagaaaagtatcaagaatcttagtgcggaaatgggaatcttata
caaaacaacggtacactggagttttttatgattcaaaatgaaaatcctga
ttagcaaaaggtatCAAGATCGTTGAAGTTCTATATTGAAGCttcattta
ttaccttgttgcccatttccgacggcttattagcagacgcccacacTAAA
AAGCTTATAGAGCAGGCAAATATCTATCAACCCATCGGCCGGGCGATGTC
AATTgaactgtttgattaccgaaccaaatcgaacagtcgTCGAACCAAGA
AATTGCGGTAAGGTCAATAActggaaccatttgagctacaaaaacattga
ttgaacttGATCAAACTGCGATATAACTTTAATCAATACTGAAGATTTTC
tggtaaagttcgattactcttcgatcaggttcggtaatcaaacacctaac
cgtttgatttcgttcgatgaaatttgatggttcgataTGATATACGACAA
tcggtttgatagggttcggttgacatcgcctgggctggcatcggggagga
aaagctggaactttttcttAAACCAAACACATTGGTTGAAAACCAATCAA
ACTTATcagataaaagtaaaagatcatacctgtggctgtgctgtttgtag
ttttggtgaagaagagggctatgagttgttgtggaaaattaactcttttt
gtactatttactgagcattatcaatttattggtgcattcactaactacac
aaacataaaatacttagtagtaaacgaataataaacctctttaaatactc
tacaaaagaccagaaaacatgataaaaatttataaaaacagcagcaagtt
tcaaaaggcggtgaaaactagtttcaagcagccattaatgtttacaaagg
cttggttacacttcttacactagcgtattttaattattaagaaaagcgct
gttttttatctttgtgagtgagtccacctttagaatattggccgtagtac
gcccgcagccaaacaccCACGCCATAATCCCCCAATGTACGGAATACTAT
AAATACGGGCTAGCTGtgtacgacaaaaaaaaaaaaaaagacggcgAAAA
TTTAAACCATCTGCACAACCtcgtgaagctatgaagccACCTATGCTCGC
TGTGCTCGCTCGGtggcaaaaattttggaatatcTTTGTAGACTTACGTT
CGGATTTACGGGAAATTCCCAAAGAACCTAGAAAACCTCTatactgaaaa
aaatcctaaaaacctCTTATGCTTAAGTTCCAGTCCATGGTGGAAGATTT
CGGTATTTCCTATCGCTTAACATTTCAACCAAAGACTGGCGGAGAGGTCT
TCATTGTTGAGGGTTCCCCAGCGGTAAGTACTTTTTgctaatttagaaaa
aattcttaaCGGCTAATAGTTTCGATTTCTCTTTgcaaaaaataatctaa
aactGCTCTGAGAATTGAATGATgggttttccaaaaaaattcagtttttt
tagaattgttgGATTTACTTTTGCGAAGTGGCCAAAAATAAGTTAAGAGT
TATATGGATTTTATCTCGTGAAGATTGATATCGTgatattcaaaaacatt
ttcaatggaCACTCTGTAGTATGTGATACTGAAGCCATAAACATTCATAG
ACCATTCACAGTATATAATTATATGCAATCCCATAATTTATAGAAAGAAG
ATAAGAAACAACAGACTACCGATGATGATGCATATCCTGAAACCGATCTG
ATAGTTCGTCTCGAAGCTCAAAAGGTTCGTTGATGAAAATTGTCACGAAA
GATAAAATTGTTTTAGGTGGAACCGCCAAAAAAGTTATCAATATCAATCA
AGGCTTGGTGACACGAGcggtttttttttgtgttggtgcaatgcagcatg
ctccatcccaccaacacaagaaaaatgtgtgtgtcccatggtttcttttt
atgtttcatgggataaaaagtgagggaaatacccaaaagacccCTGCGAC
AATGGAGCaaaaaaaCCCTCACGGTGAATATTACATACTCTTATGTTTCA
GGTTGAGCCACAGCTAGCTGCCAGTTGTCCTCCATCCAAACGAAATGGAC
CTTACGTCGATATCACCAAACCGATCATTGGTCTTCCTCCTGGACCCTTT
TATTAAATTCTGTTTCATGATTACGAGATGACGGATGTTTTGAAGAGTAG
AAGTTCCATGTTCCGCtatttattgagttttaagagattttatatttttt
aattttagagtttatGAATGTTCCCTTAATGTACGCCATATATTTTGGTA
GCCTTATTTGTTTTCCACTTTTgataaagatgagaaaaaatattCGCATA
ACTATTAATGCAGATAGAAGAAATACCGGTTTAAAGGGTTTGGTTT

Coding sequence (CDS) from alignment at sc0000095_pilon:484597..488592+

>MSTRG.12541.1.p1 ID=MSTRG.12541.1.p1|Name=MSTRG.12541.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2085bp|location=Sequence derived from alignment at sc0000095_pilon:484597..488592+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGAACAAACGATTCACAAAGAGGACGGTTAAAGCTAAAGTTTATAA
AGCAAAAGTGAGATATCACGGAAAATTACCCAAAATACCACGTGCTGAAG
AGTTTAAGGAAGAACTGAAAGAGATTGTGACAGatTTCCAGTCCATGGTG
GAAGATTTCGGTATTTCCTATCGCTTAACATTTCAACCAAAGACTGGCGG
AGAGGTCTTCATTGTTGAGGGTTCCCCAGCGAAAGAAGATAAGAAACAAC
AGACTACCGATGATGATGCATATCCTGAAACCGATCTGATAGTTCGTCTC
GAAGCTCAAAAGGTTGAGCCACAGCTAGCTGCCAGTTGTCCTCCATCCAA
ACGAAATGGACCTTACGTCGATATCACCAAACCGATCATTGGTCTTCCTC
CTGGACCCTTTTATTAAATGTTGAACAAACGATTCACAAAGAGGACGGTT
AAAGCTAAAGTTTATAAAGCAAAAGTGAGATATCACGGAAAATTACCCAA
AATACCACGTGCTGAAGAGTTTAAGGAAGAACTGAAAGAGATTGTGACAG
atTTCCAGTCCATGGTGGAAGATTTCGGTATTTCCTATCGCTTAACATTT
CAACCAAAGACTGGCGGAGAGGTCTTCATTGTTGAGGGTTCCCCAGCGAA
AGAAGATAAGAAACAACAGACTACCGATGATGATGCATATCCTGAAACCG
ATCTGATAGTTCGTCTCGAAGCTCAAAAGGTTGAGCCACAGCTAGCTGCC
AGTTGTCCTCCATCCAAACGAAATGGACCTTACGTCGATATCACCAAACC
GATCATTGGTCTTCCTCCTGGACCCTTTTATTAAATGTTGAACAAACGAT
TCACAAAGAGGACGGTTAAAGCTAAAGTTTATAAAGCAAAAGTGAGATAT
CACGGAAAATTACCCAAAATACCACGTGCTGAAGAGTTTAAGGAAGAACT
GAAAGAGATTGTGACAGatTTCCAGTCCATGGTGGAAGATTTCGGTATTT
CCTATCGCTTAACATTTCAACCAAAGACTGGCGGAGAGGTCTTCATTGTT
GAGGGTTCCCCAGCGAAAGAAGATAAGAAACAACAGACTACCGATGATGA
TGCATATCCTGAAACCGATCTGATAGTTCGTCTCGAAGCTCAAAAGGTTG
AGCCACAGCTAGCTGCCAGTTGTCCTCCATCCAAACGAAATGGACCTTAC
GTCGATATCACCAAACCGATCATTGGTCTTCCTCCTGGACCCTTTTATTA
AATGTTGAACAAACGATTCACAAAGAGGACGGTTAAAGCTAAAGTTTATA
AAGCAAAAGTGAGATATCACGGAAAATTACCCAAAATACCACGTGCTGAA
GAGTTTAAGGAAGAACTGAAAGAGATTGTGACAGatTTCCAGTCCATGGT
GGAAGATTTCGGTATTTCCTATCGCTTAACATTTCAACCAAAGACTGGCG
GAGAGGTCTTCATTGTTGAGGGTTCCCCAGCGAAAGAAGATAAGAAACAA
CAGACTACCGATGATGATGCATATCCTGAAACCGATCTGATAGTTCGTCT
CGAAGCTCAAAAGGTTGAGCCACAGCTAGCTGCCAGTTGTCCTCCATCCA
AACGAAATGGACCTTACGTCGATATCACCAAACCGATCATTGGTCTTCCT
CCTGGACCCTTTTATTAAATGTTGAACAAACGATTCACAAAGAGGACGGT
TAAAGCTAAAGTTTATAAAGCAAAAGTGAGATATCACGGAAAATTACCCA
AAATACCACGTGCTGAAGAGTTTAAGGAAGAACTGAAAGAGATTGTGACA
GatTTCCAGTCCATGGTGGAAGATTTCGGTATTTCCTATCGCTTAACATT
TCAACCAAAGACTGGCGGAGAGGTCTTCATTGTTGAGGGTTCCCCAGCGA
AAGAAGATAAGAAACAACAGACTACCGATGATGATGCATATCCTGAAACC
GATCTGATAGTTCGTCTCGAAGCTCAAAAGGTTGAGCCACAGCTAGCTGC
CAGTTGTCCTCCATCCAAACGAAATGGACCTTACGTCGATATCACCAAAC
CGATCATTGGTCTTCCTCCTGGACCCTTTTATTAA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.12541	MSTRG.12541	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.12541.1.p1	MSTRG.12541.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.12541.1.p1.exon1	MSTRG.12541.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12541.1.p1.exon2	MSTRG.12541.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12541.1.p1.exon3	MSTRG.12541.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12541.1.p1.exon4	MSTRG.12541.1.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12541.1.p1.exon5	MSTRG.12541.1.p1.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000095_pilon	genome	sc0000095_pilon:484597..488592 +

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MSTRG.12541.1.p1 (mRNA) -