MSTRG.1254.1.p1 (mRNA) -

Overview
NameMSTRG.1254.1.p1
Unique NameMSTRG.1254.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:848531..852173-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1254.1.p1 ID=MSTRG.1254.1.p1|Name=MSTRG.1254.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3643bp|location=Sequence derived from alignment at sc0000006_pilon:848531..852173- (Clytia hemisphaerica_ch_hm2_pilon)
TTTCTGGGGTGCATGTAATCAAATATTTTCTGGAAAATGCTTTTAACAGC
TCACTCTATTCAATTCAAAGCTAATAATAATTCGCTTATTTTTGTTATAA
TCCAAAGAGCAAAAATCAAAATAAATCAACAATGGCTTCCCTAATGCCAT
CAAACAAAGAAAATATTGAGAGCATGGATGTTGAGGATCAATCTATGAAG
AAACAAGAAATCAAAACAAACGAAGAAGCTCCAATGAAGATGCAAACACT
AGAACAAGCACCACCACCCCATGATGAATGTCAATATTTGGAACTGATCC
AAAAAATATTGGCCACTGGAAGAGTCAAGGGCGATAGGACTGGTAAGGGA
GATTCTTTCTCTAGATTATTATTACTTCCAGGAAAAGACTATTCTATAGT
CCCTGCTGTTTTGTCGATATTCTTGCCTGTATTATTTAATACTTTCTGCT
TTTCTGCCTGTACAACCTAAATCTATATATTAATACGCTTAAACGTGTGT
GTTTACAACGTTTTGTAAAAAGTTTTCGAAAATCTAACAAAGCTCTACAA
AGCCTCCTCTTCATGGCATTGAACCATCATCTTTTTGCACCTTAAGCAGA
TTTCCTACCACTAGACTAACTTTGAGACCCCAAGATACTATTTTCTATTC
ACCAAGTTTGGAGCTTGATTGGTTAAAATCAACCTTTTTTCCAATTTTTT
TTCGTCATTTTAAAGAATTCTTATTCAGATGCTCTTTAAAACTTTCTGTT
TACAATAGCGGCTCCCTATCACTTTCAAAACTTTTCAAAGTCTTTCAAAG
TCACCCTCGAATGTCCAACCACGATTGCTAGCCACGATGGCTAAGAAGAT
CTAAAATATACTTTTGCTAAGCCATTTATTTAATTGTGGTTAAAAATTGC
AATGCAATGTTATCTTCTTTCTCCTTTATTTCTTAAAATCAAAATCAAAT
CATCGATCGGCGGCTACCTTTCATCCGTTAGAATTTTTTAGATGTGTAGT
GATTCACTGGATTGGGACACGCAGCGTGCGACGCTGCGCATACGGATAGT
TATATTTATATTGCTTATCCTGAAAACAGGAAACTTTGGGTCTGCAAATA
TTTCTTGTTTATAAGTGAACGCTGAAATGTTTGGGTAGTTTTCAGACCTT
AAATTCAAAGTTGCTTCAATTTGGTTTCAAGCTTTTTTAAACTTACCCCT
CTCTCTTTCAAAACTTTATACGGCAACTTTATACAATTTTTGTCCTTGTC
GCGTTAAGTTGTGAAAATGATTTCTCGCTCAGTTTCAATGTTTTTGATTT
TTAGTTTGGCACGCGTTTTCTGAATTTTAATTAGCTTTTTCAGATAAAAC
TTCTTCAATATTCGATTTAGGTACTGGAACAATTTCACTGTTCGGAGCAC
AGATGAGATTTAGTTTGAGGGAAAGTTTTCCATTGCTGACAACCAAGAGA
GTGTTTTGGCGAGGTGTTGCTGAAGAGTTGCTTTGGTTTGTCAATGGATG
TACCGATGCTACCAAGTTGACTGACAAAGGAATTCACATTTGGGACGCAA
ATGCATCACGAGAATTCTTGGATGGAAGAGGTAGGGGTCTTGATTATACT
TGTGCCAACTCAAGTATCGTTTTTATATTTTATTTTTATATCCCTCCGAC
TATAAAATGAAATCACTTATAATACTGGCCGGCTATTAGCTTTGATTTAT
TTTTAAACTGACCAGCTAAATGGCGAGATTGTGTAATATATTATGGACTT
TGTATTTTCTCCTCTTAGGCTTGCAACATTACGAAGAGGGTGACTTGGGT
CCAGTCTACGGTTTCCAGTGGCGTCATTTTGGGGCTGAATACCGTGGACG
ATATGCTGACTACAATGGGCAAGGGATTGATCAATTGCAACAAATTATCC
AGACCATCAAAACCAACCCAGATGATCGACGGATGATCATGTCGGCTTGG
AACCCTGTCGGTAAGTCACCCTTTGACCGGTTGCTATGGTCGTAAGCAGC
TTCTCTTAAAAAAAAGATTAATGAGAGTAAAGTACTAGGAAACTAACTAA
ACAAGGAAAACTGCTGAAGAAAAGAAATACTTTTTTAATTTGTTAAAATT
CAATCTCCTCTAGATCATCGCTAGTCTCGATTTCCAGACCATTATTTTTT
TTACGCAAAATAGGCATAGGGGCAATTTTCCAACAAAGTAAAAAAGAGGA
GTATGTCTGCCATAAAAAAAACTGTGCGAGGAGTGTCTAAAATAATTTTT
CCTCTTTTGACGAGCGCACTTCTCTTTTGCAGTACTGTTCACCTTTTAGT
GTTTGATAATTAGGTGAAGCTGATTATAGACCTGAAATTTAAAATATTAG
TCTAGATCTAGACTAGATCATCGCATGATAACTTTCTTTCTCAATTGTTT
CAGATCTACCTAAGATGGCGCTACCACCATGCCACTCATTCTGTCAATTT
TATGTTTCTGACGGCGAATTATCTTGTCAAATGTACCAACGCTCCTGTGA
TATGGTAAGAAAAACTTTTCTCTTAATATGTTCTTTTTGTGTAATCTACA
TAAATTCTGAGGCTTTCTGTGTAGCAGTAGCAGGTGGTAGTTACAATCAA
ACGAAATGTAAGAATTTTATGGTTGGCTTAAAATTATATCGTCTACTTTC
TAAAAAGATGAAATCTAATACTTTTGATATTCTTTCCATTTCCAGGGTCT
TGGTGTACCATTCAACATTGCAAGTTACGCCCTTTTAACCGTTATGGTGG
CCCATGTGTGCAACTTGAAGGTAGCTTCAAACAAATACACCTTAGCTTTT
TGAATTGATTCCAAAAAAAAGTATATACTCTCGGGTACCTAATAGCCGGG
GGGTTGGAAAAAAATCTAAAAAAAATGATAAGCGGGGGGGGGATTGGAAT
AAAAATATCATGGGTGGAAAATTTTCGAAAAGGAGGTTAATACAGCAGAA
TTAGGGCAAAAGAGGGAACTTTCAAAAAAAAATTCCCAAAAATCAATAAG
CAGGGGGGGTTGGAATAAGAATGTCCTGGGTGGAAAATTTTCGAAAAATT
AATTGGCTGGTTACTCTATGCTATGACCATAAAAGTGGATTTGCGTTTTC
AAGAAGCTGTTTTTCATCTTTTTTCACTTATCTGGTCAGACGGATAATTT
TGAATTTCTCTTTTTTCAGCCGGGAGATTTCATCCACTGTTTGGGAGACG
CCCACGTCTATTCCAACCATGTTGAACCTTTGAAAATCCAGCTGCAAAGA
ACACCACGCCCTTTTCCAAAGTTGACCATCAAACGAAAGGTGACCAACAT
TGAAGATTTCACTATGGATGATTTCCAATTGGATGGCTACAAACCACACC
CCAAAATCAAGATGGACATGGCTGTGTAAGGTAAGTGGTTATTTCGAGTT
ATTCTGGGTAACTCAGCCTTGCAAGGGATATTTTCTTTAATATAACAAGA
GTATAATCAAGATTTGTAAATTTTAACCCTTTTTGACATCATGTAGATAA
TATTGACATTTGTATCGGTATCTAACTAGTTAGGATTTTTTTTCTTTATA
CATTTTTATTCATTCTTTATAATACTTATTAGAAAAACTTATTCAATCAT
ATTTATACAGAAAATAACAAATTTTTAAGTAGATCAATCACCA

Coding sequence (CDS) from alignment at sc0000006_pilon:848531..852173-

>MSTRG.1254.1.p1 ID=MSTRG.1254.1.p1|Name=MSTRG.1254.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5994bp|location=Sequence derived from alignment at sc0000006_pilon:848531..852173- (Clytia hemisphaerica_ch_hm2_pilon)
CCGGGAGATTTCATCCACTGTTTGGGAGACGCCCACGTCTATTCCAACCA
TGTTGAACCTTTGAAAATCCAGCTGCAAAGAACACCACGCCCTTTTCCAA
AGTTGACCATCAAACGAAAGGTGACCAACATTGAAGATTTCACTATGGAT
GATTTCCAATTGGATGGCTACAAACCACACCCCAAAATCAAGATGGACAT
GGCTGTGTAAGGTCTTGGTGTACCATTCAACATTGCAAGTTACGCCCTTT
TAACCGTTATGGTGGCCCATGTGTGCAACTTGAAGATCTACCTAAGATGG
CGCTACCACCATGCCACTCATTCTGTCAATTTTATGTTTCTGACGGCGAA
TTATCTTGTCAAATGTACCAACGCTCCTGTGATATGGCTTGCAACATTAC
GAAGAGGGTGACTTGGGTCCAGTCTACGGTTTCCAGTGGCGTCATTTTGG
GGCTGAATACCGTGGACGATATGCTGACTACAATGGGCAAGGGATTGATC
AATTGCAACAAATTATCCAGACCATCAAAACCAACCCAGATGATCGACGG
ATGATCATGTCGGCTTGGAACCCTGTCGGTACTGGAACAATTTCACTGTT
CGGAGCACAGATGAGATTTAGTTTGAGGGAAAGTTTTCCATTGCTGACAA
CCAAGAGAGTGTTTTGGCGAGGTGTTGCTGAAGAGTTGCTTTGGTTTGTC
AATGGATGTACCGATGCTACCAAGTTGACTGACAAAGGAATTCACATTTG
GGACGCAAATGCATCACGAGAATTCTTGGATGGAAGAGATGGCTTCCCTA
ATGCCATCAAACAAAGAAAATATTGAGAGCATGGATGTTGAGGATCAATC
TATGAAGAAACAAGAAATCAAAACAAACGAAGAAGCTCCAATGAAGATGC
AAACACTAGAACAAGCACCACCACCCCATGATGAATGTCAATATTTGGAA
CTGATCCAAAAAATATTGGCCACTGGAAGAGTCAAGGGCGATAGGACTGC
CGGGAGATTTCATCCACTGTTTGGGAGACGCCCACGTCTATTCCAACCAT
GTTGAACCTTTGAAAATCCAGCTGCAAAGAACACCACGCCCTTTTCCAAA
GTTGACCATCAAACGAAAGGTGACCAACATTGAAGATTTCACTATGGATG
ATTTCCAATTGGATGGCTACAAACCACACCCCAAAATCAAGATGGACATG
GCTGTGTAAGGTCTTGGTGTACCATTCAACATTGCAAGTTACGCCCTTTT
AACCGTTATGGTGGCCCATGTGTGCAACTTGAAGATCTACCTAAGATGGC
GCTACCACCATGCCACTCATTCTGTCAATTTTATGTTTCTGACGGCGAAT
TATCTTGTCAAATGTACCAACGCTCCTGTGATATGGCTTGCAACATTACG
AAGAGGGTGACTTGGGTCCAGTCTACGGTTTCCAGTGGCGTCATTTTGGG
GCTGAATACCGTGGACGATATGCTGACTACAATGGGCAAGGGATTGATCA
ATTGCAACAAATTATCCAGACCATCAAAACCAACCCAGATGATCGACGGA
TGATCATGTCGGCTTGGAACCCTGTCGGTACTGGAACAATTTCACTGTTC
GGAGCACAGATGAGATTTAGTTTGAGGGAAAGTTTTCCATTGCTGACAAC
CAAGAGAGTGTTTTGGCGAGGTGTTGCTGAAGAGTTGCTTTGGTTTGTCA
ATGGATGTACCGATGCTACCAAGTTGACTGACAAAGGAATTCACATTTGG
GACGCAAATGCATCACGAGAATTCTTGGATGGAAGAGATGGCTTCCCTAA
TGCCATCAAACAAAGAAAATATTGAGAGCATGGATGTTGAGGATCAATCT
ATGAAGAAACAAGAAATCAAAACAAACGAAGAAGCTCCAATGAAGATGCA
AACACTAGAACAAGCACCACCACCCCATGATGAATGTCAATATTTGGAAC
TGATCCAAAAAATATTGGCCACTGGAAGAGTCAAGGGCGATAGGACTGCC
GGGAGATTTCATCCACTGTTTGGGAGACGCCCACGTCTATTCCAACCATG
TTGAACCTTTGAAAATCCAGCTGCAAAGAACACCACGCCCTTTTCCAAAG
TTGACCATCAAACGAAAGGTGACCAACATTGAAGATTTCACTATGGATGA
TTTCCAATTGGATGGCTACAAACCACACCCCAAAATCAAGATGGACATGG
CTGTGTAAGGTCTTGGTGTACCATTCAACATTGCAAGTTACGCCCTTTTA
ACCGTTATGGTGGCCCATGTGTGCAACTTGAAGATCTACCTAAGATGGCG
CTACCACCATGCCACTCATTCTGTCAATTTTATGTTTCTGACGGCGAATT
ATCTTGTCAAATGTACCAACGCTCCTGTGATATGGCTTGCAACATTACGA
AGAGGGTGACTTGGGTCCAGTCTACGGTTTCCAGTGGCGTCATTTTGGGG
CTGAATACCGTGGACGATATGCTGACTACAATGGGCAAGGGATTGATCAA
TTGCAACAAATTATCCAGACCATCAAAACCAACCCAGATGATCGACGGAT
GATCATGTCGGCTTGGAACCCTGTCGGTACTGGAACAATTTCACTGTTCG
GAGCACAGATGAGATTTAGTTTGAGGGAAAGTTTTCCATTGCTGACAACC
AAGAGAGTGTTTTGGCGAGGTGTTGCTGAAGAGTTGCTTTGGTTTGTCAA
TGGATGTACCGATGCTACCAAGTTGACTGACAAAGGAATTCACATTTGGG
ACGCAAATGCATCACGAGAATTCTTGGATGGAAGAGATGGCTTCCCTAAT
GCCATCAAACAAAGAAAATATTGAGAGCATGGATGTTGAGGATCAATCTA
TGAAGAAACAAGAAATCAAAACAAACGAAGAAGCTCCAATGAAGATGCAA
ACACTAGAACAAGCACCACCACCCCATGATGAATGTCAATATTTGGAACT
GATCCAAAAAATATTGGCCACTGGAAGAGTCAAGGGCGATAGGACTGCCG
GGAGATTTCATCCACTGTTTGGGAGACGCCCACGTCTATTCCAACCATGT
TGAACCTTTGAAAATCCAGCTGCAAAGAACACCACGCCCTTTTCCAAAGT
TGACCATCAAACGAAAGGTGACCAACATTGAAGATTTCACTATGGATGAT
TTCCAATTGGATGGCTACAAACCACACCCCAAAATCAAGATGGACATGGC
TGTGTAAGGTCTTGGTGTACCATTCAACATTGCAAGTTACGCCCTTTTAA
CCGTTATGGTGGCCCATGTGTGCAACTTGAAGATCTACCTAAGATGGCGC
TACCACCATGCCACTCATTCTGTCAATTTTATGTTTCTGACGGCGAATTA
TCTTGTCAAATGTACCAACGCTCCTGTGATATGGCTTGCAACATTACGAA
GAGGGTGACTTGGGTCCAGTCTACGGTTTCCAGTGGCGTCATTTTGGGGC
TGAATACCGTGGACGATATGCTGACTACAATGGGCAAGGGATTGATCAAT
TGCAACAAATTATCCAGACCATCAAAACCAACCCAGATGATCGACGGATG
ATCATGTCGGCTTGGAACCCTGTCGGTACTGGAACAATTTCACTGTTCGG
AGCACAGATGAGATTTAGTTTGAGGGAAAGTTTTCCATTGCTGACAACCA
AGAGAGTGTTTTGGCGAGGTGTTGCTGAAGAGTTGCTTTGGTTTGTCAAT
GGATGTACCGATGCTACCAAGTTGACTGACAAAGGAATTCACATTTGGGA
CGCAAATGCATCACGAGAATTCTTGGATGGAAGAGATGGCTTCCCTAATG
CCATCAAACAAAGAAAATATTGAGAGCATGGATGTTGAGGATCAATCTAT
GAAGAAACAAGAAATCAAAACAAACGAAGAAGCTCCAATGAAGATGCAAA
CACTAGAACAAGCACCACCACCCCATGATGAATGTCAATATTTGGAACTG
ATCCAAAAAATATTGGCCACTGGAAGAGTCAAGGGCGATAGGACTGCCGG
GAGATTTCATCCACTGTTTGGGAGACGCCCACGTCTATTCCAACCATGTT
GAACCTTTGAAAATCCAGCTGCAAAGAACACCACGCCCTTTTCCAAAGTT
GACCATCAAACGAAAGGTGACCAACATTGAAGATTTCACTATGGATGATT
TCCAATTGGATGGCTACAAACCACACCCCAAAATCAAGATGGACATGGCT
GTGTAAGGTCTTGGTGTACCATTCAACATTGCAAGTTACGCCCTTTTAAC
CGTTATGGTGGCCCATGTGTGCAACTTGAAGATCTACCTAAGATGGCGCT
ACCACCATGCCACTCATTCTGTCAATTTTATGTTTCTGACGGCGAATTAT
CTTGTCAAATGTACCAACGCTCCTGTGATATGGCTTGCAACATTACGAAG
AGGGTGACTTGGGTCCAGTCTACGGTTTCCAGTGGCGTCATTTTGGGGCT
GAATACCGTGGACGATATGCTGACTACAATGGGCAAGGGATTGATCAATT
GCAACAAATTATCCAGACCATCAAAACCAACCCAGATGATCGACGGATGA
TCATGTCGGCTTGGAACCCTGTCGGTACTGGAACAATTTCACTGTTCGGA
GCACAGATGAGATTTAGTTTGAGGGAAAGTTTTCCATTGCTGACAACCAA
GAGAGTGTTTTGGCGAGGTGTTGCTGAAGAGTTGCTTTGGTTTGTCAATG
GATGTACCGATGCTACCAAGTTGACTGACAAAGGAATTCACATTTGGGAC
GCAAATGCATCACGAGAATTCTTGGATGGAAGAGATGGCTTCCCTAATGC
CATCAAACAAAGAAAATATTGAGAGCATGGATGTTGAGGATCAATCTATG
AAGAAACAAGAAATCAAAACAAACGAAGAAGCTCCAATGAAGATGCAAAC
ACTAGAACAAGCACCACCACCCCATGATGAATGTCAATATTTGGAACTGA
TCCAAAAAATATTGGCCACTGGAAGAGTCAAGGGCGATAGGACTGCCGGG
AGATTTCATCCACTGTTTGGGAGACGCCCACGTCTATTCCAACCATGTTG
AACCTTTGAAAATCCAGCTGCAAAGAACACCACGCCCTTTTCCAAAGTTG
ACCATCAAACGAAAGGTGACCAACATTGAAGATTTCACTATGGATGATTT
CCAATTGGATGGCTACAAACCACACCCCAAAATCAAGATGGACATGGCTG
TGTAAGGTCTTGGTGTACCATTCAACATTGCAAGTTACGCCCTTTTAACC
GTTATGGTGGCCCATGTGTGCAACTTGAAGATCTACCTAAGATGGCGCTA
CCACCATGCCACTCATTCTGTCAATTTTATGTTTCTGACGGCGAATTATC
TTGTCAAATGTACCAACGCTCCTGTGATATGGCTTGCAACATTACGAAGA
GGGTGACTTGGGTCCAGTCTACGGTTTCCAGTGGCGTCATTTTGGGGCTG
AATACCGTGGACGATATGCTGACTACAATGGGCAAGGGATTGATCAATTG
CAACAAATTATCCAGACCATCAAAACCAACCCAGATGATCGACGGATGAT
CATGTCGGCTTGGAACCCTGTCGGTACTGGAACAATTTCACTGTTCGGAG
CACAGATGAGATTTAGTTTGAGGGAAAGTTTTCCATTGCTGACAACCAAG
AGAGTGTTTTGGCGAGGTGTTGCTGAAGAGTTGCTTTGGTTTGTCAATGG
ATGTACCGATGCTACCAAGTTGACTGACAAAGGAATTCACATTTGGGACG
CAAATGCATCACGAGAATTCTTGGATGGAAGAGATGGCTTCCCTAATGCC
ATCAAACAAAGAAAATATTGAGAGCATGGATGTTGAGGATCAATCTATGA
AGAAACAAGAAATCAAAACAAACGAAGAAGCTCCAATGAAGATGCAAACA
CTAGAACAAGCACCACCACCCCATGATGAATGTCAATATTTGGAACTGAT
CCAAAAAATATTGGCCACTGGAAGAGTCAAGGGCGATAGGACTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1254MSTRG.1254Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1254.1.p1MSTRG.1254.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1254.1.p1.exon6MSTRG.1254.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1254.1.p1.exon5MSTRG.1254.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1254.1.p1.exon4MSTRG.1254.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1254.1.p1.exon3MSTRG.1254.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1254.1.p1.exon2MSTRG.1254.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1254.1.p1.exon1MSTRG.1254.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:848531..852173 -