MSTRG.12535.1.p1 (mRNA) -

Overview
NameMSTRG.12535.1.p1
Unique NameMSTRG.12535.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:407244..415494-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12535.1.p1 ID=MSTRG.12535.1.p1|Name=MSTRG.12535.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8251bp|location=Sequence derived from alignment at sc0000095_pilon:407244..415494- (Clytia hemisphaerica_ch_hm2_pilon)
AGATAACTTATAACGAAAACTGAATAAAAGAAACAATGTCAAAAACAGTT
GATTGAACATTGCTCATTTATGGCATTGAATCAATATGTATGGCTTGATT
TGCAAGAATGGATGTGTGGTGAAAAATGACTGGTAACCCAACAATTTAAG
TTGGAGCCTGGAATTCCCGAGTTAATTTTATCCGAGTTATTTTACATATG
ACGTCATAATTTCAGTTTTGTTACGTCATTATGACGTCATCACAAAAATA
ATAACTCGAGTTGTTTTTGAGTTTTTAACTTTCCGAGTTATTTGGTGTTT
TGTAACTTGGTTTCTTTTCGTGTCTTTAACTTCTCGAGTTATCACTTTTG
TGGTGACCTCATAAAAACTGAAATTATGACGTCACATGCAAAATAATTCG
AAAGAATAACTCGGAAAAAAATAACTCGGGAATTCCAGGCCCCATTTAAG
CTGTACTCTTTTTTTATAAAAACCAGTAAATTTACCGATGCTCTGCTGCT
CTTATTTTTTTAACACTTTAAGCCCTAAGCCCAAACTAAGGCAAATAGAG
GTATACTAGTTTGATGACGACTTCAAAAAAGTGAGGACGATGACTTTTTT
AGGATGTAACCTTTTTGACTAAGTAATGCTAAAAAGCAACGAACAAAGCT
TATGATTCTGGCTGAAGAAAATAACGTGTGGTACAAAGTGGAAGAATGTA
AAAGAGACTTTTCCGTCAATATTTAGCCAAATTCAATAAATTTTAAGCTT
AAAATCCTTCCATTTTTGGACCTACCTTGGAGGTCCTATAAATTAACCGA
TGTCCGTCCGTCCGTTCGTCCGTCCGTCTGTTACGTATTATTATGCGTAT
TAGCAATGCCCAAAACATGGCAGAGTCCGATTTTTGACAAAAATTCTTTT
CCGGCCGAAAATGCCGAAATGCCGGAAATCGCCGTTTTTGCAGATTTTCA
TCGGACTTTTTCCTTATAATTGGTTGTTTTTTCACACAAAAACATTGTTA
ATAGCATTGTCCACGATCAAGCATGGTTCAATTGTCAATAAAACTGATTT
TTGAAGCCGGAACTTTCTAAAAATCGCCGGAACAGCTAAACGGTACATTT
TTTGACTGGTTTTTTTCTCCTCGTATTGCTATCCAACTTTCATCATCAGG
TAGGTCCATTCAGCATCTAGCTTGTTTTTACTAGGGGAAGCATTCTGGAG
GGGGGGGCTTAAAATCTCAAGATTGGCAAGAGCTATGAACTTGAAATTTC
GACCATTGGTAAAAGTATGGATAATTAGAGATGATTTGCAAACAACGATT
TGTTCAGCCACCTGCCTGATTGGTACATTTGTTTTTAATGGCTATTTTGC
AAAAAACTGTCACTGAAAAAGATTGGTGTCATATTTGGTACTTTTCAGAC
CGGTCACACCGGTCAGGACCTACTAGAGCTGTTGACTTAAAATTTTCACC
AAAGGTAGATATTGAAATCTTAGGTAGTTTGCAAATACTTGGTTGGAATT
TTACAAACCATCTAAACCGGAAAACTTTGATCTGCTTTGACCAAGAATAA
AATCTCTTTTATTCAAGTACAGTTTATTTAAGTAAAATCCTCATAAATTA
GGAATTATCATTTAATGCGTTTTAAATTTACACAAAACTGGTATAGAGAA
TCTACCGCCCTAACATCTAACGCCATTCTTTTATATTTTTAGTGTTAAAA
TCGCTAATATTAACCACCCACGAGACTGCCTTTTTTCTCAGGATTGCCAA
GTGCAATATCCTTGTCATAATTCCAAGCCAATAGTATTTTCCAATCCTAA
GATACAGTAACCTAGGGCTAATTTAGGCAAAGAGGGCAATTTTGGCCGGT
CTGTAAAATGCACGGTTATGACAGGTGACCCCAACAGATTTATAATGCCC
GAATGGCTAGATAGCGTGCTTTGGCTGTAAAGTGAGCCGTATTTCGGTAG
AGATCCTACCGAGGTCACGTGACATTACAATAGAATTTCGGCACCAAAAG
TACCCTAAAAGTATATGACACGTGCTCTTGTTTCACAGAATTTGACCATG
AAAAGGTTTCTTCGTGACCTATTTTTTAACGGAATTTGTAGAAGGAGCTG
AAGATTTACATCGAAATTTGAAAAGTCTAAGAAAAAGTCTTTAAATAGTA
AAAGTCTATAAATGGTACCTGATGGTGACGTATTGTTTTGTTGATTTAGA
TTCTAATTAATAATACAAAGGACGAGTTCAGTTTGAGCCATCTTAACGCT
GTACGTTAAGATGACTCATTTTTACTGGTAGCATAAGTAGAAAAAAAGCC
CAATTTTTGCCATCGCAAATTCAACCGCTAAAAATCGCGAATTTTTCAAC
CAAAAATACATTCAAATATAGCGCTTTTGATTCTCTAAAACAAGCAAAAA
AAAATTTCTAAATTATATTTGACTATCAAAAGTTACAGGCATTCTTGTTT
CCACTGCCAATTATATCTGGATAGACTTTAGTTTCATTTATACTGAAGAG
ACGGAAAAATCGTCTGAGACGAGTAGTTTGTAAAATGTGATCTTTGGAGG
AGATCCTATTTATTGAAACTTGAATGGAAAGTACACTCCTCCATAATTCT
TATTTTCTAAATTGCTCGTGTATGTCATAAACAATTCTGCTGATTTTACC
TTCGAGGAGTTCAAATCACTATGAATTTTTATAATTTGTGTACACTTGAT
TGCTTTCGTTTTGTATTTTAGAGCAACATTTCAAATGATGATTGGAGAGG
CAGAATCAATCAAAGCCAGCGTAAACATCTAGTTGATCGACTGTAAGTAT
ACTAGTTTAACAAGAAAAAGGAAGAAAATGGGCTCGTTTGTTGGTTTTTG
TGATAAATTTCAGATAACAAATCTTTTTGAAAATCTTTTTACAGTTTTAA
ATTTTCTGTACTCGAAAATATTTTATATTCATGACTTTAATGACTCATGA
CTACCTTTCTAATGAGCACAAAATTACAAACTATTTCAAAATTCATTTGC
AATTTTCGTAAAACACACCCTTACAGTGCATTTCTGTTTCCTTGAAAAAC
ACAATTGGTCCCCGTCGGTCACCTTGACTGGTTGCAACCCCGACCCTTTA
CCCCAGGGTCACTGCTCTTAATCAAAAAGTAAGGATATGTTGGACGGTGA
AAAAGAATGCGGCTATTATATTTTGATTTTTCCCGACATGTTTCGGACTC
AGTCCGTTCTCAAGGGAATGATATTTCTATATAAAAAAAAGTGTTTCTAT
ACAAAATTATTTGACGTCAAATTGGACAAATATGTCATTTTAGGCGATTT
CGGCTTGAAAATGGGTTGGTGTAAATGGGGCCATCTGATAAGTTGAATTT
GGTCTAAAATGAACGTGTAAATCAGACTTAGGCGCTCGGTTGGAGAAGAT
TGAGTTCTTGGTTCAATCATGAGGTGTGAGGGTTCTCAGTTCTTTGATCC
AGAAGTTTTCTCTCTGTAGTATTATCATTTTCATTCTTTCTATATCTGTC
TCATTGATCTGCTCGATGATGGTGAACTTTGCGTCTCTGTTGAAATCGTG
GTTGGTTTGGTGGAAATGTTTACACGCTGGGATTGTCTCTTGTCGTGGTC
TGTATGCATTACTTCTTTGGTTATTGAGTCTTTGATTGAATTGGGTCTCG
CTTTTTCCAATATATTTGATGTGACATTAGTTGCATTCCAGGAGGTAGAT
GATACGAGTGCTTTTGCAGTTAACGTTTTGGAAGATCTGGTATGTCCTTT
TGGTTTGTTGGCTGGTGAAGGTTGAGGTTGACATTATTTGTTTACAGCAA
AGGTTTCCTATCCTTGTTAAGCAAGGCTGGCACTTTCCTTTCAGTTTTTG
TTGTTTTCTTGTGACTTTGTTATCGGATATTGATGTTTGTCCAAGTAGAT
CTTTCAAGTTTTTGTTGCGTCTATACGCAATGACTGGTGTTTGTTGGAAG
GTATCTTGAAACCGTTCGTTGATGTTGAGGATATCAAAAAGTAAGGATAA
GCACAAGAACCCCACAAGAACTGTCCATTCTTTTTTCAGTATTTCTGCCA
TTGTGCCACAAGGAATCAACGAGCCAGGTACAACAAAAACAAACAAGTGG
AAAAACCTTATTTCAAACGTTCAAAAAGCTGAAGAAGAACTTTATAGTTC
TGCCGCCAGTAAAGAAGACTATTTTCACTTGTTAGCAGATAAAGTCCACA
ATATTCAAACAGAATTGGAGGATAAGCGCAATGAAAGAAAGCGATACGTG
AAAGAAGCGATGAAAAGAGACGCAGAAGGACAAAGGTGAGTGAATTCTTA
ACCTCCTATCGGAATGAAAAGTGTTGACATAAAAAAATTCTCAAAAATAG
CCTTTTTAACTTTGAATACCGTATTCGAATGAACCAAGGTCACTTTAGTA
ACGTTAATTGAAACCATTTTGCCTTTTCATTATTATTTCAGTACAAATAT
GTCAATTTAGGGATGTGGAACTTCGTCAAAATCAGTTCGAATAAAAAAAA
GAATACAATCATAGTTGTAAATCTATGTTTTTCTTCATATAATACGAAAA
TATCAAACATTTTCCTTAAAGGACGGGCGTTTATTCGAGGGGGTGTTTAA
AAGATGGACGTTTATTCGAAATAATACAGTATGTATAATTTAAACTTACC
TTAAGGGAAAAAATTTTCGCGAGTAATTTCGCCAATTTGGGCGTAACTCG
CGAAATTAATTTTCGCGAAATTAATTTCCGCGAAACACACCAAAATGGCT
AAATCGCGAAATTCGATTTCTTTGGAGGAAGACGGCGATGAAGTTTAATC
ATGACTTATCATAGAAACATTCATCTTTGATGTTATTATTTTGTTGTTAA
AGTTTGTTAATGTGACTGAAATATGTCTTGAAATCAATGAAAAATATGAA
AAACATTTTCTCTGTAAAAAAAATTCTTTTGAAATTTCTCAATCGCGAAA
TTAAATTCCGTGAAACTTTTGAAATTGGCTCATTCGCGAAATTAAATTCC
GCGAAAATTTCTTCCCTTAAGTTACCTTGTTGGATTGGTCTAAAGACTTT
CCTTGGTATAAAACGAACAATATACCTTAAGGGAACTATTTTTTGCGGGA
ACTAATTTTTGCGGTTCGCAGTTCAAGATTTAATATTTAATATTTGCGGG
AACTTAATTTTGCGGATTTCTCACTTGAAAGAAATTTAGAGCCGTACTGT
GAATTATTCGACCTTTGTGTTTTTGAAAAATTTTGCGGGAACTTAATTTT
ACGGTTTGGGTCTAAATCCGCAAAAACCGCAAAATTTAGTTCCCGCAAAA
ATTAGTTCCCTTAAGGTAGAACAGACTGGTGACGTTGAAATTTCAATTTC
AGTGACTTTTTTAAACTTACTTTATGTAATGAATTGATGAATTTGGAACC
TACTGAAGAGTAAGTCTAATATATAGGGGATGCGTATCGTCTAAAATATT
TCTGCCCCAACTTACCTCCGTCTTTTCTTTTTTGGACCTACCCCGGTGGA
GGTCCTATGAATTAACCGTTGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTTTGATTTTTT
GCACAAAGATGCATAACTATAAACCCTCGAATGTGACGGAGCCCGATTTT
CGAAAGAAAAAAATTTTGGGCCAAATTTGGGCCAAAAAACGGCTAAAAAA
CGGGTTTTTTAGACTTTGTGAAAAATTGGATCATTAATTTTTTCTAATTT
TTTGCATGAAAGTAGGGTACCATCAAAGGTAAAAGATGGCTCAAGCATAT
TTTTGCAAGACATTTTTTTTGGCTCACAAAACGCATGTTTATCTATAAGA
ATCACTATCAATAAGTATACATCAATGTTCTTAGTCAAATTACTCAATTC
TTTTATGAGATAGATGTTTTTTTTTGCTCACGAGGGCTTACTTTTGAAGA
ATGTGTGTGTTTAGAAATGAAATTTTGGCTACTTGGCGTGTTTTTGGCCA
AATAAGATATTTTTTTATCAGCACATTATCAATTACTTCTAGGTATTACC
TTTTCTCGAGGTTGGCGCTTTCATTCTTTATGATTTTTTTCACAAAGATG
CATAACTATAAACCCTCGAATGTGACGGAGCCCGATTTTCAAAAATACAT
ATTTTTGGGCAAATTTGGGCTCAAAAATGCATGTTTATCTATAAGAATCA
CAAACGCACGTTCCGCAAAAATTGATAATTATGAAAACAACAGCACAATG
ACTTCATTTTTTTCATTCTTTGATTGGATGTGACGAAATTATGTAAATTT
ATGCAAATTTTGGTTACCCCAAATTTAAGGTAACTCTCGGACGAGAATTT
CATACACGATACGCATTTCTTCTGAAGGATATCTCAAAGTAAAAACATGG
TCAAGTAATCAGATTCAAATTACTAAGTGACCATTTTTAGACTTACAGAC
GAATTCTTCTTAAAATGATTCTAAAAAGGTCAGAGTGACATTTTTCAAGC
TTTCATCAAGATTTCCTTCAACATAAAATCTTTAAGAAATACGACGGTGA
TAGCTTCTGATAACGTAACAGCTCAAGAGAAGCGACTGCTTGAAAAGGCT
TCAACCCGTTGACTCTTTCAGGGCATCTAAATTGGAAGAAGAAAATGAAA
CGACGGTGAAGAAACGTAAAGAAGAAGAATGTGCTGGAGGGAATCCAAGT
GAAGAGCAAGAGACGAAGGAAGTAGAAGCAACAAATCAAGAAGCTGAAAA
TATAGATCAAGGGTAATTCTCACTCTCATTTAAAGCAACGTTGAAGAAGT
GTCACCATTTTTTTCTTTTGAATTTTTATAAAACTTAAGTTTCATCATAA
GTACATCCAAATTGACTGAAAAAATCGATTCTCCTGCAAACTTCTAGAAT
TTTAAAGACAGCCCTGCAGCTTAAAGACAGCCCTGTGTCACAGACCCTGT
GGGACCCCCGCCCCACTGAAAAATTTGGCCAAAATTCTGTTCCCGGTGGG
AAAATTACCCCATAATTTCAGCTCCATTGGGAATTTGACTTAGTTTTTGT
TTAGAATAGGAAAAGAAATGCACTCCAAAACCATCCCCACTGAGAAGTTC
TTACTTAGTTTTACTTTTGAAGATCACTTCCACTTTGCAAACCAAGTCAA
GATTGGCATGAATCGATTACTGAAACACAAAGAAGAGAACACATTGATGA
ACTGTAAGTATTTTTGTTAAGGCTTTGCGATTTCCCAGGTGAGACCAGCT
TGATTAGTTGTTTACGATCTCGACCGATCCTCACACTTGAAAAGAAGGTT
GAAGAAGAATGTTGTCAATATTCTTATAATTTCATTGTTCAACTGCCAGT
TTGTTTCAATTTGAAAATCTTTGTTAATTTAATTTTTTGCATGGTATTCA
TTTTCATTACATTCCATCTACTTATTTATTTCAGTATTTGCTGCCATTGT
ACCACAAGGAGTCGACGAGCCAAGTACAACAAAAAACAAACAAATGGAAA
ATCTAGTTTTATACGCCCAAAAAGTTGAAGAAGATATGTATACTTCTGCT
ACCAGTAAAGAAGAATATGAATCTTTGTTAAACGAGAAAGTGAGCAAAAT
AAAAACAGAACTCGAAGAAAAACGATTGGACCGCGAGAAGAAATCCAAAA
CACGAAATCAAAACGAGGCTAGTGCAGGATGACTATTATATTCACACCCC
TGTCTCACACGGTCTTAATTTTTGTTGTCGGTAATTATATTTTAATGGGA
TAAACTTTCGCGGGGATTAAACTTCGCGGATTTCGCGGATTTGGGTGTCA
TCCGCGAAAATCCGCGAAATTAAGTCCCATTGGAAATTTGGAAGGGCCTC
ATCCGCGAAATATTTCTGAACAAAACTCAAAATATGTCAAATAAATACTA
TCTGAATGGTTACTTGCATCAGAAAGGCGCAAATAATGTGTATTTCAACA
ACCAATATGCATGATTTGACAGTAGAAGTCACAAAATCGTGAAAATATTG
CCACCCAATAGTGCCACACGCGAAATTAAGCCCGCGAAATTTTTGAATTT
CGCAGATAGGCTCAACCGCGAAATTTAATCCCCGCGAAAGTTTATCCCAT
TAAAGTAGTCATTGTTTGTTGCAGAGGTATTGTCACCATATTACACAAAC
ACATTTATTTTCTCTAAAATTAATTGCTCATACGATGTTGGTCTCGATAT
AATTCATACAGTAATTTATTATTCGATCACTCAAATCGCTGCATCCCCGT
A

Coding sequence (CDS) from alignment at sc0000095_pilon:407244..415494-

>MSTRG.12535.1.p1 ID=MSTRG.12535.1.p1|Name=MSTRG.12535.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000095_pilon:407244..415494- (Clytia hemisphaerica_ch_hm2_pilon)
TATTTGCTGCCATTGTACCACAAGGAGTCGACGAGCCAAGTACAACAAAA
AACAAACAAATGGAAAATCTAGTTTTATACGCCCAAAAAGTTGAATCACT
TCCACTTTGCAAACCAAGTCAAGATTGGCATGAATCGATTACTGAAACAC
AAAGAAGAGAACACATTGATGAACTGGCATCTAAATTGGAAGAAGAAAAT
GAAACGACGGTGAAGAAACGTAAAGAAGAAGAATGTGCTGGAGGGAATCC
AAGTGAAGAGCAAGAGACGAAGGAAGTAGAAGCAACAAATCAAGAAGCTG
AAAATATAGATCAAGGATGAAAAGAGACGCAGAAGGACAAAGTATTTGCT
GCCATTGTACCACAAGGAGTCGACGAGCCAAGTACAACAAAAAACAAACA
AATGGAAAATCTAGTTTTATACGCCCAAAAAGTTGAATCACTTCCACTTT
GCAAACCAAGTCAAGATTGGCATGAATCGATTACTGAAACACAAAGAAGA
GAACACATTGATGAACTGGCATCTAAATTGGAAGAAGAAAATGAAACGAC
GGTGAAGAAACGTAAAGAAGAAGAATGTGCTGGAGGGAATCCAAGTGAAG
AGCAAGAGACGAAGGAAGTAGAAGCAACAAATCAAGAAGCTGAAAATATA
GATCAAGGATGAAAAGAGACGCAGAAGGACAAAGTATTTGCTGCCATTGT
ACCACAAGGAGTCGACGAGCCAAGTACAACAAAAAACAAACAAATGGAAA
ATCTAGTTTTATACGCCCAAAAAGTTGAATCACTTCCACTTTGCAAACCA
AGTCAAGATTGGCATGAATCGATTACTGAAACACAAAGAAGAGAACACAT
TGATGAACTGGCATCTAAATTGGAAGAAGAAAATGAAACGACGGTGAAGA
AACGTAAAGAAGAAGAATGTGCTGGAGGGAATCCAAGTGAAGAGCAAGAG
ACGAAGGAAGTAGAAGCAACAAATCAAGAAGCTGAAAATATAGATCAAGG
ATGAAAAGAGACGCAGAAGGACAAAGTATTTGCTGCCATTGTACCACAAG
GAGTCGACGAGCCAAGTACAACAAAAAACAAACAAATGGAAAATCTAGTT
TTATACGCCCAAAAAGTTGAATCACTTCCACTTTGCAAACCAAGTCAAGA
TTGGCATGAATCGATTACTGAAACACAAAGAAGAGAACACATTGATGAAC
TGGCATCTAAATTGGAAGAAGAAAATGAAACGACGGTGAAGAAACGTAAA
GAAGAAGAATGTGCTGGAGGGAATCCAAGTGAAGAGCAAGAGACGAAGGA
AGTAGAAGCAACAAATCAAGAAGCTGAAAATATAGATCAAGGATGAAAAG
AGACGCAGAAGGACAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12535MSTRG.12535Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12535.1.p1MSTRG.12535.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12535.1.p1.exon6MSTRG.12535.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12535.1.p1.exon5MSTRG.12535.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12535.1.p1.exon4MSTRG.12535.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12535.1.p1.exon3MSTRG.12535.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12535.1.p1.exon2MSTRG.12535.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12535.1.p1.exon1MSTRG.12535.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:407244..415494 -