MSTRG.12533.4.p1 (mRNA) -

Overview
NameMSTRG.12533.4.p1
Unique NameMSTRG.12533.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:374933..378565-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12533.4.p1 ID=MSTRG.12533.4.p1|Name=MSTRG.12533.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3633bp|location=Sequence derived from alignment at sc0000095_pilon:374933..378565- (Clytia hemisphaerica_ch_hm2_pilon)
TAAACTGAAGCAATTATTCAAATCAAACCTCATGTAAACGTCTTTCTGTA
ATCAAAAAATAATAATTTTTTAATGCAAGAAGAAGATACATCATAAACGA
TGCTCTATTCTCTTGGCTTACACTTGAACACATGTTTTGATCATTCCATT
TCTTCACTGCTATTGACAGTAAGTTCTTTCCCTCCATTTATTCTTGCTTC
AGTTCGTTCCATACGCCAAATCGATCATTTGGATTACAAAGTGGAAGTTA
CGATATCAAAGAAAAAAAGGTAGAGTGAAGTCTCAGTGATCAAGTCACTG
AAAAGATTATTTAATTTTAAACATTTTTGAAATTCTTCTAACTTGCTTCT
TTGTCTTCTTATGCAAATTAACATTTTATGTATTAATGAATGTAGAAATC
ACCTCAACAGATTATTGATCGTCCATTAACGAAATTTTTGTTGCTTTCTA
CACCAACATAACTTTTCATTAGCCTGGTTGGCAGACCTCTATATAGATAT
ACTTCCTAAATAGTTTACTTTAAGAGACTTTTCCGTCAGAGGATGAGCAA
AAACCTACTTCTATATAGACTCTTATCGTCACTTTACTTTTTTCGCAGTT
ACTACGAACATGTTCGTTACCAGACCTCCGACCAGCAGCCCTTGATGACG
TCATAGAAGAAGATGAGGAAAACTCCGAAGAACATGCCAGGTAAACTTAT
GTTATGGGAAGCCCTCTTAGTCTCTAATACTCTTCCTGTATAACTTCGAA
TAAACGCCCCCTTCTTAAACGCCCCTTGAACAAACGCCCCTCCTTAAAGG
AAGAATTTTCAATAAACGCCCCCTCAAATAAACGCCCCTGTCAAGTAGCT
GTCAGGAAGCATCATTTGAAGGGAAACTTTTTTATAGAGTTATTCGGCTG
TGCCATATGGAAAATGACGTCAAAATAGGTTCTGATTTTTTTTGTTCACA
CGTGTGTTATGAAAAGTTTTTTCTTCCAGTGATAAACAAGAGTCTGAGGT
AAAAGATGTTAAAGAAGAAGATAACGAAAATGAAGATGAAAAGGATGAGA
GCAATGAAGATGAAGAAGAAGTTTCTGATGCTGAAGCGGACGCAGACGAT
GATGACGAATTTGATGATTATGAAAGCATGTTGGAATCCATGAGAAATGT
CCTTGGTAAAACTGCAGGTATGTCTTTATTGTTTAAGATTTTCTTTCGAA
AAAGATTAAATTTTAAATGATATTCAAATAGTACGAACACATTCTCGTTG
TTAATTCTCAGTTTTCCTCTTCTTTTTAAAAGTACCATTTTTATGTTTCA
GCTAAAGAAGCTACAATCAACAACAACAGTAAGTCGAATATTCATCGTAT
TAATCACGCACTTTATCGTTTTAATTGACTCACGTTTCTCCTTCTATTTT
TCTAACTAGTACTTCCAACAGCTGTTCTTGGCAGCTGTCGTCATGCTGGC
AATCGAAAATGAGTTTACAAATAAAAAATGTGGTTTCTCGACTAACCTGA
TAATAATAATACACTCTTACGGACGTCTATGCAATTGACTTTGTCAGTAT
GGAACAGTATCTCTACCCACAAGTCCTCCTTATATTTGAGGGACTGTTAG
AATAATAGTGATGTACTTTAATGGGATAAATTTTCGCAGTGATTAAATTT
CGCGGTTCAGCTCATCTGCAAAATTTTAAGATTTCGTGGGGACTTAATTT
TGCAGATGGCATTACCGGGAGACCATATTTTTATGAGTGTGTGTCTTTTT
ACTGCCAAATTACATATACTGATTTTCGAAATTATTTGGACTTCTTTGAT
GCCAGTTTACATTTTAAAAGTAGTTATTTGACATTTTTAAAGTTTTGTTC
AAAAACAATTTCGCGGATAAGACCTTTCTAAATTTCCATTTTATTTTACT
TAATTTTACTGATGACACCCGAATTCGCGAAAATTTATCTCTTATTGGAG
TTACTCATTTATTCATCCTTCATTTCAGTGACACTGGAGAATGGGCAAGC
GAACGAACAAGAGAACAATGAAGAAGATGAAGATGAAGATGATGAATGGG
AAGAAGAAAGAGATGATGAAGGTTCCCTGTCAAGCCCCCTTGAATTAGAA
AATGAAAAGTTTCTGTACTTCAAGACTTCATTTCCCTGTCAAACCATCCT
TGCATTAAAAATTGGAAAGTTTAATTACTTCAAGGCTTATTTCCACTTCT
CAATAAACATCCAATTACCGAGATGGTGAATCAGCATTTTACTTTCTCTT
GCGCGATTCTGGTCACTCAGGGGATATTTTAAGATTGTAAGCCAACTTTT
GATTGATCTTTTCATTTGCAGATGTATCAAATAAAAATCAAAAGAATGTG
CTCCAAACAAATGGAGGTGATCGAGAAAATCTGTTTTCACGAATCGAGGA
ATCAAGAATGGCTTTAGAAAATGAGTTGGGAATGGATCTTTTTATCAAGG
TGTACCGACATGTACAGGTGTGTATTCATGATATGCACCGTTGCAATGTC
TTCTGGCATTACATCGCGGACCCAATGGCTGATTGGTTGTAACTGACGTA
AAACCAATCAATACGTCACTTTCAACCAATCAGCTGTTGGGTCCATAGAA
GACATTGCAATGGTGCATATCATGAATTCCAAGGGTTTATTTCATTTTTT
CTGTTTCATCCAGTTTGAATGAATGGTCAAAGTTTGAAAAATTTGCTTAC
CCTAATTTAGGTTCATTTTTCTTAAGAAATCAACTTCTCAGACGGGCAGG
TATTATTGCTTTATATTTTTCTCTTTCTTAACGAGAACAAAAACGAGAAT
TGGCTAAGGAGCAAAAATAGTATGAAAAATGAAAAGAAATTTGGTTGAAT
TAACCATCTTAAAAGTAGCAGGCTCAAAAATAAATGCCCAATGGCTCCGA
AATGTATTTAAGATATTTACAAGTAGCAACAAAGGGTGAGAGTTTCTTCT
TCTCTCTCTCCACTGTCGCACAGATGATGCAAGATAACGAAGATGATGAA
CTTGAGATGGGCACAACCGAAATCTCTCAACTACTCGGTGATAAAGAAAA
TCTGTACCAAAAAATACTTTATCTTGTCATCGCTGACTCAGCATATTCTG
AAGGTAAGCTGAATGACAGATGATAGATGATTGACTATGCTTACTAAACC
ACAATGTTGAGATAATACCTAAATTGTTTAGAATTTGAATAAATGTGTAT
TTTTATCAGGGCCGTAAAGATTCAAAAGCTCAAAAATTCTGTCTAGGATT
GTAAATTTTATATAATGCTTTTAAACTTATCTTAGCCTCTAAAGTTTACA
CTTGTTAAATTTATTTCTCAGGAAATGATGGCACATTTTGAAACGTAAGA
ACGTAACGTTGAGGTGAAACAGAGATATTGGCATTTTAAAACCTAGTGGT
AAGAATCGCAAATCATCAAACGTGACAGCTAAAGTTGTTACAGCAATGAT
TATTTTGTTAACAAAACAAATGGAATCAAAAATCAAAAATAATTATTTAA
CCAAAACAAAATTTTTTTTTATAAGCTACATATATGATAATTAACAAGCA
ACCAATTATAGATTTTTTTTAATTTTCCTGGTACTCTTTACGGAATTTCA
AAATCAATACAGTTGAACTCGTGTAATTCGAAC

Coding sequence (CDS) from alignment at sc0000095_pilon:374933..378565-

>MSTRG.12533.4.p1 ID=MSTRG.12533.4.p1|Name=MSTRG.12533.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6120bp|location=Sequence derived from alignment at sc0000095_pilon:374933..378565- (Clytia hemisphaerica_ch_hm2_pilon)
GAAATGATGGCACATTTTGAATGATGCAAGATAACGAAGATGATGAACTT
GAGATGGGCACAACCGAAATCTCTCAACTACTCGGTGATAAAGAAAATCT
GTACCAAAAAATACTTTATCTTGTCATCGCTGACTCAGCATATTCTGAAG
ATGTATCAAATAAAAATCAAAAGAATGTGCTCCAAACAAATGGAGGTGAT
CGAGAAAATCTGTTTTCACGAATCGAGGAATCAAGAATGGCTTTAGAAAA
TGAGTTGGGAATGGATCTTTTTATCAAGGTGTACCGACATGTACAGTGAC
ACTGGAGAATGGGCAAGCGAACGAACAAGAGAACAATGAAGAAGATGAAG
ATGAAGATGATGAATGGGAAGAAGAAAGAGATGATGAAGCTAAAGAAGCT
ACAATCAACAACAACATGATAAACAAGAGTCTGAGGTAAAAGATGTTAAA
GAAGAAGATAACGAAAATGAAGATGAAAAGGATGAGAGCAATGAAGATGA
AGAAGAAGTTTCTGATGCTGAAGCGGACGCAGACGATGATGACGAATTTG
ATGATTATGAAAGCATGTTGGAATCCATGAGAAATGTCCTTGGTAAAACT
GCAGTTACTACGAACATGTTCGTTACCAGACCTCCGACCAGCAGCCCTTG
ATGACGTCATAGAAGAAGATGAGGAAAACTCCGAAGAACATGCCAGATGC
TCTATTCTCTTGGCTTACACTTGAACACATGTTTTGATCATTCCATTTCT
TCACTGCTATTGACAGAAATGATGGCACATTTTGAATGATGCAAGATAAC
GAAGATGATGAACTTGAGATGGGCACAACCGAAATCTCTCAACTACTCGG
TGATAAAGAAAATCTGTACCAAAAAATACTTTATCTTGTCATCGCTGACT
CAGCATATTCTGAAGATGTATCAAATAAAAATCAAAAGAATGTGCTCCAA
ACAAATGGAGGTGATCGAGAAAATCTGTTTTCACGAATCGAGGAATCAAG
AATGGCTTTAGAAAATGAGTTGGGAATGGATCTTTTTATCAAGGTGTACC
GACATGTACAGTGACACTGGAGAATGGGCAAGCGAACGAACAAGAGAACA
ATGAAGAAGATGAAGATGAAGATGATGAATGGGAAGAAGAAAGAGATGAT
GAAGCTAAAGAAGCTACAATCAACAACAACATGATAAACAAGAGTCTGAG
GTAAAAGATGTTAAAGAAGAAGATAACGAAAATGAAGATGAAAAGGATGA
GAGCAATGAAGATGAAGAAGAAGTTTCTGATGCTGAAGCGGACGCAGACG
ATGATGACGAATTTGATGATTATGAAAGCATGTTGGAATCCATGAGAAAT
GTCCTTGGTAAAACTGCAGTTACTACGAACATGTTCGTTACCAGACCTCC
GACCAGCAGCCCTTGATGACGTCATAGAAGAAGATGAGGAAAACTCCGAA
GAACATGCCAGATGCTCTATTCTCTTGGCTTACACTTGAACACATGTTTT
GATCATTCCATTTCTTCACTGCTATTGACAGAAATGATGGCACATTTTGA
ATGATGCAAGATAACGAAGATGATGAACTTGAGATGGGCACAACCGAAAT
CTCTCAACTACTCGGTGATAAAGAAAATCTGTACCAAAAAATACTTTATC
TTGTCATCGCTGACTCAGCATATTCTGAAGATGTATCAAATAAAAATCAA
AAGAATGTGCTCCAAACAAATGGAGGTGATCGAGAAAATCTGTTTTCACG
AATCGAGGAATCAAGAATGGCTTTAGAAAATGAGTTGGGAATGGATCTTT
TTATCAAGGTGTACCGACATGTACAGTGACACTGGAGAATGGGCAAGCGA
ACGAACAAGAGAACAATGAAGAAGATGAAGATGAAGATGATGAATGGGAA
GAAGAAAGAGATGATGAAGCTAAAGAAGCTACAATCAACAACAACATGAT
AAACAAGAGTCTGAGGTAAAAGATGTTAAAGAAGAAGATAACGAAAATGA
AGATGAAAAGGATGAGAGCAATGAAGATGAAGAAGAAGTTTCTGATGCTG
AAGCGGACGCAGACGATGATGACGAATTTGATGATTATGAAAGCATGTTG
GAATCCATGAGAAATGTCCTTGGTAAAACTGCAGTTACTACGAACATGTT
CGTTACCAGACCTCCGACCAGCAGCCCTTGATGACGTCATAGAAGAAGAT
GAGGAAAACTCCGAAGAACATGCCAGATGCTCTATTCTCTTGGCTTACAC
TTGAACACATGTTTTGATCATTCCATTTCTTCACTGCTATTGACAGAAAT
GATGGCACATTTTGAATGATGCAAGATAACGAAGATGATGAACTTGAGAT
GGGCACAACCGAAATCTCTCAACTACTCGGTGATAAAGAAAATCTGTACC
AAAAAATACTTTATCTTGTCATCGCTGACTCAGCATATTCTGAAGATGTA
TCAAATAAAAATCAAAAGAATGTGCTCCAAACAAATGGAGGTGATCGAGA
AAATCTGTTTTCACGAATCGAGGAATCAAGAATGGCTTTAGAAAATGAGT
TGGGAATGGATCTTTTTATCAAGGTGTACCGACATGTACAGTGACACTGG
AGAATGGGCAAGCGAACGAACAAGAGAACAATGAAGAAGATGAAGATGAA
GATGATGAATGGGAAGAAGAAAGAGATGATGAAGCTAAAGAAGCTACAAT
CAACAACAACATGATAAACAAGAGTCTGAGGTAAAAGATGTTAAAGAAGA
AGATAACGAAAATGAAGATGAAAAGGATGAGAGCAATGAAGATGAAGAAG
AAGTTTCTGATGCTGAAGCGGACGCAGACGATGATGACGAATTTGATGAT
TATGAAAGCATGTTGGAATCCATGAGAAATGTCCTTGGTAAAACTGCAGT
TACTACGAACATGTTCGTTACCAGACCTCCGACCAGCAGCCCTTGATGAC
GTCATAGAAGAAGATGAGGAAAACTCCGAAGAACATGCCAGATGCTCTAT
TCTCTTGGCTTACACTTGAACACATGTTTTGATCATTCCATTTCTTCACT
GCTATTGACAGAAATGATGGCACATTTTGAATGATGCAAGATAACGAAGA
TGATGAACTTGAGATGGGCACAACCGAAATCTCTCAACTACTCGGTGATA
AAGAAAATCTGTACCAAAAAATACTTTATCTTGTCATCGCTGACTCAGCA
TATTCTGAAGATGTATCAAATAAAAATCAAAAGAATGTGCTCCAAACAAA
TGGAGGTGATCGAGAAAATCTGTTTTCACGAATCGAGGAATCAAGAATGG
CTTTAGAAAATGAGTTGGGAATGGATCTTTTTATCAAGGTGTACCGACAT
GTACAGTGACACTGGAGAATGGGCAAGCGAACGAACAAGAGAACAATGAA
GAAGATGAAGATGAAGATGATGAATGGGAAGAAGAAAGAGATGATGAAGC
TAAAGAAGCTACAATCAACAACAACATGATAAACAAGAGTCTGAGGTAAA
AGATGTTAAAGAAGAAGATAACGAAAATGAAGATGAAAAGGATGAGAGCA
ATGAAGATGAAGAAGAAGTTTCTGATGCTGAAGCGGACGCAGACGATGAT
GACGAATTTGATGATTATGAAAGCATGTTGGAATCCATGAGAAATGTCCT
TGGTAAAACTGCAGTTACTACGAACATGTTCGTTACCAGACCTCCGACCA
GCAGCCCTTGATGACGTCATAGAAGAAGATGAGGAAAACTCCGAAGAACA
TGCCAGATGCTCTATTCTCTTGGCTTACACTTGAACACATGTTTTGATCA
TTCCATTTCTTCACTGCTATTGACAGAAATGATGGCACATTTTGAATGAT
GCAAGATAACGAAGATGATGAACTTGAGATGGGCACAACCGAAATCTCTC
AACTACTCGGTGATAAAGAAAATCTGTACCAAAAAATACTTTATCTTGTC
ATCGCTGACTCAGCATATTCTGAAGATGTATCAAATAAAAATCAAAAGAA
TGTGCTCCAAACAAATGGAGGTGATCGAGAAAATCTGTTTTCACGAATCG
AGGAATCAAGAATGGCTTTAGAAAATGAGTTGGGAATGGATCTTTTTATC
AAGGTGTACCGACATGTACAGTGACACTGGAGAATGGGCAAGCGAACGAA
CAAGAGAACAATGAAGAAGATGAAGATGAAGATGATGAATGGGAAGAAGA
AAGAGATGATGAAGCTAAAGAAGCTACAATCAACAACAACATGATAAACA
AGAGTCTGAGGTAAAAGATGTTAAAGAAGAAGATAACGAAAATGAAGATG
AAAAGGATGAGAGCAATGAAGATGAAGAAGAAGTTTCTGATGCTGAAGCG
GACGCAGACGATGATGACGAATTTGATGATTATGAAAGCATGTTGGAATC
CATGAGAAATGTCCTTGGTAAAACTGCAGTTACTACGAACATGTTCGTTA
CCAGACCTCCGACCAGCAGCCCTTGATGACGTCATAGAAGAAGATGAGGA
AAACTCCGAAGAACATGCCAGATGCTCTATTCTCTTGGCTTACACTTGAA
CACATGTTTTGATCATTCCATTTCTTCACTGCTATTGACAGAAATGATGG
CACATTTTGAATGATGCAAGATAACGAAGATGATGAACTTGAGATGGGCA
CAACCGAAATCTCTCAACTACTCGGTGATAAAGAAAATCTGTACCAAAAA
ATACTTTATCTTGTCATCGCTGACTCAGCATATTCTGAAGATGTATCAAA
TAAAAATCAAAAGAATGTGCTCCAAACAAATGGAGGTGATCGAGAAAATC
TGTTTTCACGAATCGAGGAATCAAGAATGGCTTTAGAAAATGAGTTGGGA
ATGGATCTTTTTATCAAGGTGTACCGACATGTACAGTGACACTGGAGAAT
GGGCAAGCGAACGAACAAGAGAACAATGAAGAAGATGAAGATGAAGATGA
TGAATGGGAAGAAGAAAGAGATGATGAAGCTAAAGAAGCTACAATCAACA
ACAACATGATAAACAAGAGTCTGAGGTAAAAGATGTTAAAGAAGAAGATA
ACGAAAATGAAGATGAAAAGGATGAGAGCAATGAAGATGAAGAAGAAGTT
TCTGATGCTGAAGCGGACGCAGACGATGATGACGAATTTGATGATTATGA
AAGCATGTTGGAATCCATGAGAAATGTCCTTGGTAAAACTGCAGTTACTA
CGAACATGTTCGTTACCAGACCTCCGACCAGCAGCCCTTGATGACGTCAT
AGAAGAAGATGAGGAAAACTCCGAAGAACATGCCAGATGCTCTATTCTCT
TGGCTTACACTTGAACACATGTTTTGATCATTCCATTTCTTCACTGCTAT
TGACAGAAATGATGGCACATTTTGAATGATGCAAGATAACGAAGATGATG
AACTTGAGATGGGCACAACCGAAATCTCTCAACTACTCGGTGATAAAGAA
AATCTGTACCAAAAAATACTTTATCTTGTCATCGCTGACTCAGCATATTC
TGAAGATGTATCAAATAAAAATCAAAAGAATGTGCTCCAAACAAATGGAG
GTGATCGAGAAAATCTGTTTTCACGAATCGAGGAATCAAGAATGGCTTTA
GAAAATGAGTTGGGAATGGATCTTTTTATCAAGGTGTACCGACATGTACA
GTGACACTGGAGAATGGGCAAGCGAACGAACAAGAGAACAATGAAGAAGA
TGAAGATGAAGATGATGAATGGGAAGAAGAAAGAGATGATGAAGCTAAAG
AAGCTACAATCAACAACAACATGATAAACAAGAGTCTGAGGTAAAAGATG
TTAAAGAAGAAGATAACGAAAATGAAGATGAAAAGGATGAGAGCAATGAA
GATGAAGAAGAAGTTTCTGATGCTGAAGCGGACGCAGACGATGATGACGA
ATTTGATGATTATGAAAGCATGTTGGAATCCATGAGAAATGTCCTTGGTA
AAACTGCAGTTACTACGAACATGTTCGTTACCAGACCTCCGACCAGCAGC
CCTTGATGACGTCATAGAAGAAGATGAGGAAAACTCCGAAGAACATGCCA
GATGCTCTATTCTCTTGGCTTACACTTGAACACATGTTTTGATCATTCCA
TTTCTTCACTGCTATTGACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12533MSTRG.12533Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12533.4.p1MSTRG.12533.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12533.4.p1.exon8MSTRG.12533.4.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12533.4.p1.exon7MSTRG.12533.4.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12533.4.p1.exon6MSTRG.12533.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12533.4.p1.exon5MSTRG.12533.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12533.4.p1.exon4MSTRG.12533.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12533.4.p1.exon3MSTRG.12533.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12533.4.p1.exon2MSTRG.12533.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12533.4.p1.exon1MSTRG.12533.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:374933..378565 -