MSTRG.12530.1.p1 (mRNA) -

Overview
NameMSTRG.12530.1.p1
Unique NameMSTRG.12530.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:296459..299279-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12530.1.p1 ID=MSTRG.12530.1.p1|Name=MSTRG.12530.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2821bp|location=Sequence derived from alignment at sc0000095_pilon:296459..299279- (Clytia hemisphaerica_ch_hm2_pilon)
TTGTGATTGCCTCCTTAGGCCCTTACTTAGGACTATACAGACAAGTATTA
TATATAGTAATACATGATATTATTATAACATCAACACTCGATTATGATAC
ATGCAGATGACCTTTCAAAAAAGACTGTGTCACTGCCAGTTTTCAGAGCA
TGTCATCGTTGCCCCCAAGGAAAATTTCCAACATAAAACTCTGCCCATAA
AATCCGTCTCCCACCACAAAAAAAGCCAGAAAGACAGGTAAATATAGCCA
TTTTTCAATGATTTTGTCCCTGAACTGTAGATATTATCAAAATTTTGATT
GCGCCTGCCCCTGCCTGCCCTTAAAAAGTGATGTGAGCACTCTTTGCCCT
TGAGATTTTGATGATTTCTGTCATACTCTGAAAACTGGGGTCACTGCCAC
TGGGATTATAAATAGTTGTTTTGCTTTGGCGAACTCAATGGTCTTTTGAA
TAACAATTACCGTCAGTCAGGCAGGCACATCCTGGCAAATGAATGGGGTA
TTTTTCACTTGCGATTGGTGGCAAATGCAAGGGGTCGAAAACAAAAGTGA
TGTAATAGCACTGAATACCCCACGCAATTGAACCGGGTTGGAAATATTTT
GCTTCATTTCAAAGAACTGCATAGATGAAATTGTTTTTCCATTGGTCAAT
TTTGTCTTCGAAAATTGAAGAAACTTTTAACGAAAAAATAAAGTTCCCAG
TTTTCTTCCTTTTTTCCCATTTTCAGTTTGAAGATCATTTTTATTCATTT
TCACGCTTTTAGCCTGAGACGTCCTATCTCATTTACACTGGGTGACGAAT
ACCCCATGCAAATGCTCACCCCGTTCATTTGCCAGGATGTGCCTGACTGA
CCGTAACTTGGTCTAATGTCGACACCCTTTTTTATCAGCTGAAATTTATA
GAAAGGCTGAAACGTGTGATAGACACCATCTAAAATTTGATGCCCTTCTG
AACAGTGACTGGGCACAAAGATTTGAGTTTAGCAAGTATTTTCAGCTTGT
GGTAGCTTTGAGATGTCAACTACAAAACTAAATTTCGGCACAAATGTTTT
GTCTTTTTTTTTTGTCTAAGTTTTAAAATTTATGTTATGAAACAATTTTT
TTTTATTGCATAAATAGATGATAAAAACAATAGTTTGGTGGACATGTGGA
GGTGCTTTCGCTGCCCTATACGCAAATAAAGTACAAGGCTTACATTTCCT
TTACAGTAAGTTTCATCTTTGATATTTAAGTTTGTTTGTCTAGTTTAGAA
AAAAGTTGCTGCTTTAATAAACAGTAAATGTAATGTTGTTTTTACATGTC
ATATTGAGGCTTTCACATCAATCATTAGTAGAGGACATCTTCTGCTAAAC
TATTTGAATTCTTATACAAAAAAATTCACTTCCGATCGCAAACACCTGAA
ACACGTTGTCGAATTTGCTAATTTCTACAAAAAGTTATGACGAAACGCCT
GTAAGGCTAACATATTCTCCCTTGTATATACTCTTCTTCCTATAAAACAA
TTATTTTTATTATAGAACCAAGAAGAATTGTATTAGTGACACTTCTTGGA
TTGGCTGTTGGATACAAAGTTCATGAATTTGAAAGAGATTTACCACAACT
AATGGTAGAGGCTAGACGTGAACATGTTTTTGCTCCAAAATCTCGTGAAA
TGTTACTGACATACCAAGCTATGGTGCGAAGAAATCAAGAGCAAGTGACT
GAAGGAGGTACCTGCATTTCCTCATACTTTTATCTCGTTGAATTTCGAAT
TTTGGGGTATTGTTAATCGGTTTTTAAGTGTATATACCATACTTGTTCCT
TCACAAGCAGAAACTTTCATAAAAATACACTTTTTGTATACAGCTTTTTG
GACCCACCCCGGTGGAGGTCCTATAAATTAACCGTTGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTCTGTTCTCCTGATATGCCTT
CAGGGAAATATTTTGCGAGTTATTCAAAATTGCAACTTTCCATACAGTAG
GTGGCCTCTAAAAGTATATTATCGGGAAGCTTGTCCTGCACAAGGCACTG
TCATTTTGGACTGCACTCAAGACAAAGGATTCGCTAGCATACTTAAGGCG
TACAAACTTGCGTGGGCAGAAATTTTCGCGAGGTCTAAAAATCGCACATT
TACTTTCGCGAATTCGATGAAAAACCAGTTTCACGAGCATAAACATTCGC
GAAATGAAAATTTTCACACGAAAAAATGGCTCACAAGTACAAATACTTCT
TGGATTGGATTAAAGCTTTTGTCCTTTGACCAAGAGGCTTTAACTGGCTA
AAAAAGTGTCATAAATCTTACATTTTTTTTATTCTGGATTAGAAGTTTTG
CAGATTTTCTATTTTGTCAAGGATTTTTCACGAGCATAAAATTTGGTGAA
CGGCCCCTTCGAGAGTTTTCAAAGACTCACAAAAAGGGCTAAAATTCGTG
AAAATCGCGAAAAAGTTTCTGCTCATGAAAGTTTGTACGCCTAGTAAAGT
ATATCAGAAATTTAGGTAGTTCCAGTGTAAGCTTGATAACCATATGCGAT
GATTCTATTTGATCTTTTTTACAGATTTCGAAGTTACAGAAGAAGAGGAA
GAAGAAGACGAAGATGAAGAGTAGACAAATAACAAACAATTTTTTCGAAT
GTGTATTATATTTTTATCCCACTAGATATCCTGTTTCTAAACAATATTTT
TAAAATTAATCCACTTCTGGTGTCTTTTGTTCATTTACTGTACTCTCGCA
TGGTAAGGGGCTATTCTTTAG

Coding sequence (CDS) from alignment at sc0000095_pilon:296459..299279-

>MSTRG.12530.1.p1 ID=MSTRG.12530.1.p1|Name=MSTRG.12530.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000095_pilon:296459..299279- (Clytia hemisphaerica_ch_hm2_pilon)
ATTTCGAAGTTACAGAAGAAGAGGAAGAAGAAGACGAAGATGAAGAGTAG
AACCAAGAAGAATTGTATTAGTGACACTTCTTGGATTGGCTGTTGGATAC
AAAGTTCATGAATTTGAAAGAGATTTACCACAACTAATGGTAGAGGCTAG
ACGTGAACATGTTTTTGCTCCAAAATCTCGTGAAATGTTACTGACATACC
AAGCTATGGTGCGAAGAAATCAAGAGCAAGTGACTGAAGGAGATGATAAA
AACAATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTGCCCTATACGCAA
ATAAAGTACAAGGCTTACATTTCCTTTACAATTTCGAAGTTACAGAAGAA
GAGGAAGAAGAAGACGAAGATGAAGAGTAGAACCAAGAAGAATTGTATTA
GTGACACTTCTTGGATTGGCTGTTGGATACAAAGTTCATGAATTTGAAAG
AGATTTACCACAACTAATGGTAGAGGCTAGACGTGAACATGTTTTTGCTC
CAAAATCTCGTGAAATGTTACTGACATACCAAGCTATGGTGCGAAGAAAT
CAAGAGCAAGTGACTGAAGGAGATGATAAAAACAATAGTTTGGTGGACAT
GTGGAGGTGCTTTCGCTGCCCTATACGCAAATAAAGTACAAGGCTTACAT
TTCCTTTACAATTTCGAAGTTACAGAAGAAGAGGAAGAAGAAGACGAAGA
TGAAGAGTAGAACCAAGAAGAATTGTATTAGTGACACTTCTTGGATTGGC
TGTTGGATACAAAGTTCATGAATTTGAAAGAGATTTACCACAACTAATGG
TAGAGGCTAGACGTGAACATGTTTTTGCTCCAAAATCTCGTGAAATGTTA
CTGACATACCAAGCTATGGTGCGAAGAAATCAAGAGCAAGTGACTGAAGG
AGATGATAAAAACAATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTGCC
CTATACGCAAATAAAGTACAAGGCTTACATTTCCTTTACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12530MSTRG.12530Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12530.1.p1MSTRG.12530.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12530.1.p1.exon4MSTRG.12530.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12530.1.p1.exon3MSTRG.12530.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12530.1.p1.exon2MSTRG.12530.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12530.1.p1.exon1MSTRG.12530.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:296459..299279 -