MSTRG.12524.3.p2 (mRNA) -

Overview
NameMSTRG.12524.3.p2
Unique NameMSTRG.12524.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:193776..199342-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12524.3.p2 ID=MSTRG.12524.3.p2|Name=MSTRG.12524.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5567bp|location=Sequence derived from alignment at sc0000095_pilon:193776..199342- (Clytia hemisphaerica_ch_hm2_pilon)
ATTAAGAGCATTATTACTATTCATATGAGAAATGTCTTCTTTTTTCTTGA
TTTGAATTTTTCAGTCTTCATGAGGTGGCTCTAATTGGCATGTCAATTAT
TATTTCTATTATTATTTCCAAAGGTTTAACTTTTTAAATCAAACTCCTTC
CTTATTTTAAACCCTTATTACATTCTTCTCAGAGAAGAAAAAAGATAAGA
TTGTTAGTAAAAACAAATAAGGAAAAAATAATGGTAGAAAAAATGGATGA
GGATGATTTGCAAAATGATTCTCAGATCACAGATGCTCAATCCAAATCTA
AGAAAACAGCAAGAGGTAAAAGAAGAACTGCTGATAATGAGAGGAATGTT
AGTACTGTAAACAAAAGAGCAAAAAATGATTCAACTGTGACAACTGCATT
GCCACCACATGGATATCCTTTAGAACATCCATACAACAAAGATGGATATG
GTTACATCCTGGCAGAACCTGATCCTCATGCAGATACAAAAGATTTTGAA
ATGGATTCATTCGCTGGTAAACCAATCCCTGGAGAGATCTACAGGCATTG
TTTACAGCCTGAAGTTTGTTTATCCTTACATGATAGAGCTCCTCAGTTGA
AGGTCTCTGATGATCGTTTATCTGTTACTGGTGAAAAAGGTTATTCAAGC
ATAAGAGCTAATTACAGTGTCACTAAGGGTGAGTGGTATTTTGAAATCAA
AGCCACTAGCATGCCAGAAGGTTCAGCATTAAGATTGGGCTGGTGTCAAC
CCTATGGCAATCTTCAAGCACCCCTTGGGTATGACAAATTTAGTTATTCT
TGGCGTTCTATCAAAGGAACAAAATTTCATCAAAGCAAAGGAAAACACTA
TAGTAATGGCTACAAAGAAGGTGATGTATTAGGATTTCACATTAGCCTTG
TGGAGCCAGAGGCTTATGACAGCAATTATCTCCCAAAAACATACAAAGAT
AAAGCACTTATCAAGTTCAAAAGTCATTTGCATTATGAAGAAAAAGATGT
CTCAGAGCAGATGGATAAAGTTATACAACCAAAGAAAGGATGCAAAATTA
CCTTTTTTAAAAATGGGCGCTCTCAAGGTACTGCTTTTGAAGATATTTAT
GGTGGTCCTTATTTTCCTGCTGCATCTATCTACAAAAATGCAACTGTAAC
CTTTAACTTTGGACCAAAATTTCGATTTAAACCGAGAGGTATATCTTACA
AGCCAATGAGTGATCGAGTTGAGGAAATGGCAGTTGAACAGTCTTTGTCA
GATGTATTATTTTTATCTAATTTTGAATTTGATAAATGGAACTCTGTGAG
AAAATCTAGCAGAAGGAAGTAAAGTAAACTGATTTTTTATTGTCACCAAA
ACACCTCTTTGTATTTTTTTCTTTGTATTATTGTTTTTAAATTTTGGTAT
TTAAAGTTATAAATTATTCATCATTTAATCATTAAAAATCATGCTTGGTG
CTTATATTTTTTCCTTGTTATTTTATTGGGCTAATAACTTAATTAAAAAT
GTTTTTTTTTGAGAAAAAAAATCTGAAATCATATTTAGCAGCAGTTCTTT
TTATAAGCAATCCATTTTCTAATTTCGTGATTGCCTACAGTAAAACCTTA
TAATCTCATCTTTTTCTTGTTTATTTTAGTGAACATGAAAGAATCTTGTG
CAAAAATAATAATAGTATTGTCTGGAAAACGTAAATCTGGGAAAGATTAT
GTTGCAGATAACATAGTGAAGAAGATCTCCCCAGAGAGATGCCATATCAT
GAGAGTAGCTTTACCTATCAAAAAACATTTCTGTGAGAAATACAACATGG
ACTATAAAGAAATGATGACCTCATCAGAATATAAAGAATTAAGACGAGCG
GAGATGATCCAATGGGGTGAAGAACAAAGGAATAAAGATACAGGAGTATT
TTGCCGTACTGAGAAAAATTCAGCAATTGATTCTGGGAAACCAGTTTGGA
TTCTAAGTGATGCACGCAGACCTAGTGATGTTAATTATTTTAGGGAATAT
GCCAGAAGCCTTGGTGTAACATTTTATGCTATTCGTGTATCTGCAGATAT
AGAAACAAGAGAGGAGCGTGGTTGGAAGTTTACAAAGAATGTTGATGATG
TAGATTCTGAATGTGCCCTTGATTCTTATGACAAATGGGACTTTTGCTTT
GAAAATTCACAAAATGATAGTGTTATTGAAAAGGTTGAGGAACTCACTAC
CAATATGAAACAAATTCTCTCTAGATAACTGAGACCACACTTTTATACAT
AGTTCGCACCCCCCCTTTATAAAGGGGGGGTAGCGATGTTCAGAAAATCT
CAGAAAGGGGGGGGTAAGAGAATTTTTTCTAGAAAGGGGAAGTTTTCAGA
AAGGGGGGGGGTGGGGGGGTAAGAAAAAAGAAAGTTATTTTCAATTTAGT
GTATATATACCAGTTCTGGTTACACAGTCTGAAAGAAGTTCACTTTTACC
TTTGATCAAAGCGTACACCACCAAATTCAGATTTCCTAATTATTTGCTTA
TTTACACTGAATGTTCTTGCTTTTTCACCGGTAGAATTATGGTAGGATTT
TAAAATTTTGAGGGGGGTAGCATCAAATTTTAAAAGGGGGAAGAACCTAG
GGTAGGGGGGGTAGCTCTAGGGTAGGGGGGGTAGTGACCCCCTTCCGAAC
TATGAATTATACCTTTATATATTTTGATATATACATCACTGTTTTAGTTT
CTCGCTCCTTTCCCAATTTGATGGAGATTTAGTTCAATATAATGCAGTCC
AATTAATTTTGATAAATTGCACAAGACTGCTCAAAATATTTATATCATAA
TATTATACTGTAGCATATTTTTAATGATTTTGTATCTATTTTAAAACACT
TAAATAATATAAAGATAATAGATTTTGCTTGATTTTAATTTTCTTATAAC
ACACAATTTATAATATCTAATCTCTATTTTTAGGATATAAAGCAGCAAAA
TGGTAAAATTTGAAAATTTTGAAATCTTTGAGAGCGAATCGAAAGGAAAG
GGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGATTTTACATGA
AGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAGGAGGAAGAT
GTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGCTCAAAATGT
AAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGATTGGAAAAT
CCATAAACATGAATGTAAATGCTTGGTCAAGGTTGCACCAAAACAACCAC
CTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATATTATACCTCA
AACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTTAACAGACAA
TCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCACCTTTAGTG
GTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGATGATGCTGAT
ATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCACAATCACTAA
TTCAGAGCTAAACTCCCTAGGTTTGTTTTAATCATTTTTTTCTATGAAAA
ATTTTCAGCACCCCAAGCTTGTAGCTAAGACCATATTTTTACAGTTCATA
TGTTCTAAAAAATTCTCTTATAACTTGCACTGGGCTTAAGGCACAAAACG
GAAAGTTTATATGCTGAGTTATATAATGTTTTCAATTTGTTTTATTATTT
TCTTTCTTAGGGACAGGATTATACAAGACATCTTCTTTTCTTAACCATTC
ATGTGATCCCAACGTTGTTGCAATCTTCAATGGCACCAAAATACACATCC
GAACGATCAAGGAAGTGCAAGAAGGAGAAGAGCTTTTTCTAAGCTACATC
AACCTCTTAGCCACCACAAAACATCGACAGTCTGAACTAATGGATGGGTA
CATGTTTACATGTAGTTGCTCCAAATGTAATGGTAATGGATTTTCAGACT
TGATGATGTTGAGTATGAAATGCCCACAATGCACCTGTCTGCAATCGCTT
GATACACAATCAGGTAATGAATCTTTACGTTCTTTCTAATTTCATGAAGT
AGTTCCAAAACTAAGGGATATTGTTCAATTTGTTTTTTTTTAAATAGTCA
GTTTCCGTTGGCAATATTTTTCAAGCTTCATGAAGGCTTTCGACTTTGGT
GCCAATCATCATTTTTCAATTTTCGTCATAGAAAGATCGTGTGGATGTGA
CAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAAAGCTCTCGATTGTA
TGGATTCTTTAGAAGCACTTTATAACTCAATTAACGTCATCCCTACTCCA
GACCAACACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAGACAGCTCTT
GGGACATTGTAATATTGCATTACTACATGCTTATGAAGTGGGTATGGACG
GTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGGAGTATGGCAAAAAG
TTGGAGAAACTTTATCTCGTTTATCTTACGAAGAACCACCCGAGTATCGG
TCTTCATTATTTTAAACAAGGTATTATATTGAGCTTTCCTATTTTTATAC
AGTGTCTGGGAGATTACCAAAGTAGAGTCAATAATCACCTTTATTCGAAT
TTCTATTATTCGAATTTTTCTAGTGTAATTCGAACTAATATATTGATTAA
TGATTAAGTCCCATGAAGATCGAATTAGAGAGAAAGTCAACTGTAGTCTG
TTTTCTATGTTAAGTAATATGAAAAGTGATGTAACTTTGACACGTGCCTT
TCTTTTCATTAACTCGTACAGATAAGCGTTTGTTTTACTACAAATTATTT
AATCTTTATTCTTAGGAAAACTTGAGCTTCAGATGGAAAATCTTCGTGAA
GGGATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGTATTTCACACGG
AGAGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTTACAATCAGCTT
TAATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAAATATGATGAAG
ATGGAAGAACAATAATTTGCTGCATGAAATTCTGTTCCGTTTAATGATCT
TGTGGAATTTTTATTATTGATTGCTGCATGTTATGGTTCAAGATTATCAC
AGGAAAGATGGTAAAAAGCAGCGAGTTCCTTTATTCTTTTGTTCATGTTT
GGGAACTGGTTTCTTTTAGTTAAAAAAACAACCAGTGCTAGGAAGTGGCT
ATGGTTCCATCCTCACACTCTGGCCTGCACTTTGAACATTTGCTGCTCGT
CATCTCTTTGTATTGGGAACCAAAGACAGTCAACAGTCAACCTTTTTTTT
GAAATCTTTTTATGACACACCTTACCTCATCATGCCGATTTATCAGATTT
AGTTTTCATCATCATGCGGGACAAACAGTTAGCGGCGGACATGTGTACAG
CCCTGCTGAAAATGCAAATGTTAAGCAAGCACGGCTCTGACAGTGATGAT
TGTCCGATACCAACTGCTTGATGCCTCTTTTGTTTGCATTATTACTTTTG
TTTTTATTTTATACTCTTTGTACTTATGTTGATATTTTACTGATCGAGCA
AAATAAAGAACTGTTAC

Coding sequence (CDS) from alignment at sc0000095_pilon:193776..199342-

>MSTRG.12524.3.p2 ID=MSTRG.12524.3.p2|Name=MSTRG.12524.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2772bp|location=Sequence derived from alignment at sc0000095_pilon:193776..199342- (Clytia hemisphaerica_ch_hm2_pilon)
ATCGTGTGGATGTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGA
GGACAGGATTATACAAGACATCTTCTTTTCTTAACCATTCATGTGATCCC
AACGTTGTTGCAATCTTCAATGGCACCAAAATACACATCCGAACGATCAA
GGAAGTGCAAGAAGGAGAAGAGCTTTTTCTAAGCTACATCAACCTCTTAG
CCACCACAAAACATCGACAGTCTGAACTAATGGATGGGTACATGTTTACA
TGTAGTTGCTCCAAATGTAATGGTAATGGATTTTCAGACTTGATGATGTT
GAGTATGAAATGCCCACAATGCACCTGTCTGCAATCGCTTGATACACAAT
CAGATGGTAAAATTTGAAAATTTTGAAATCTTTGAGAGCGAATCGAAAGG
AAAGGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGATTTTAC
ATGAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAGGAGGA
AGATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGCTCAAA
ATGTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGATTGGA
AAATCCATAAACATGAATGTAAATGCTTGGTCAAGGTTGCACCAAAACAA
CCACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATATTATAC
CTCAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTTAACAG
ACAATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCACCTTT
AGTGGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGATGATGC
TGATATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCACAATCA
CTAATTCAGAGCTAAACTCCCTAGATCGTGTGGATGTGACAAGAAGTGTG
AAAGAAACAAATCAGCCATGTTGAGGACAGGATTATACAAGACATCTTCT
TTTCTTAACCATTCATGTGATCCCAACGTTGTTGCAATCTTCAATGGCAC
CAAAATACACATCCGAACGATCAAGGAAGTGCAAGAAGGAGAAGAGCTTT
TTCTAAGCTACATCAACCTCTTAGCCACCACAAAACATCGACAGTCTGAA
CTAATGGATGGGTACATGTTTACATGTAGTTGCTCCAAATGTAATGGTAA
TGGATTTTCAGACTTGATGATGTTGAGTATGAAATGCCCACAATGCACCT
GTCTGCAATCGCTTGATACACAATCAGATGGTAAAATTTGAAAATTTTGA
AATCTTTGAGAGCGAATCGAAAGGAAAGGGTCTACGTGCAATAACACATA
TTGATGCTGGAGAGGAGATTTTACATGAAGAACCTCTAGTGTACACTTTG
ATGAATGCGAAATGTAGAGGAGGAAGATGTGATTATTGTTTTAGTGAAGA
TAGGAAATTATTCAAATGCTCAAAATGTAAATTTGTTTCATACTGTGGGC
GTGAATGTCAATCTGGGGATTGGAAAATCCATAAACATGAATGTAAATGC
TTGGTCAAGGTTGCACCAAAACAACCACCTGATATCTGTCGTTTAGTATC
ACATCTATTGTTCAAATATTATACCTCAAACAAAAAGACTTCTGCCAATC
CTTCAGAGATTGAAGCCTTAACAGACAATCGTGGGAGAGTAACTAATTCA
CGTAAAGAAGCATTTTTCACCTTTAGTGGTGTTTTGTTTGATTACCTCAA
AGGATGCACTTTCACTGATGATGCTGATATCTATGGATTGCTTTGTAGAA
TCTCAAGCAACAGTTTCACAATCACTAATTCAGAGCTAAACTCCCTAGAT
CGTGTGGATGTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAGG
ACAGGATTATACAAGACATCTTCTTTTCTTAACCATTCATGTGATCCCAA
CGTTGTTGCAATCTTCAATGGCACCAAAATACACATCCGAACGATCAAGG
AAGTGCAAGAAGGAGAAGAGCTTTTTCTAAGCTACATCAACCTCTTAGCC
ACCACAAAACATCGACAGTCTGAACTAATGGATGGGTACATGTTTACATG
TAGTTGCTCCAAATGTAATGGTAATGGATTTTCAGACTTGATGATGTTGA
GTATGAAATGCCCACAATGCACCTGTCTGCAATCGCTTGATACACAATCA
GATGGTAAAATTTGAAAATTTTGAAATCTTTGAGAGCGAATCGAAAGGAA
AGGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGATTTTACAT
GAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAGGAGGAAG
ATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGCTCAAAAT
GTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGATTGGAAA
ATCCATAAACATGAATGTAAATGCTTGGTCAAGGTTGCACCAAAACAACC
ACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATATTATACCT
CAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTTAACAGAC
AATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCACCTTTAG
TGGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGATGATGCTG
ATATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCACAATCACT
AATTCAGAGCTAAACTCCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12524MSTRG.12524Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12524.3.p2MSTRG.12524.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12524.3.p2.exon5MSTRG.12524.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12524.3.p2.exon4MSTRG.12524.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12524.3.p2.exon3MSTRG.12524.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12524.3.p2.exon2MSTRG.12524.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12524.3.p2.exon1MSTRG.12524.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:193776..199342 -