MSTRG.12503.1.p1 (mRNA) -

Overview
NameMSTRG.12503.1.p1
Unique NameMSTRG.12503.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000094_pilon:1268566..1271929+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12503.1.p1 ID=MSTRG.12503.1.p1|Name=MSTRG.12503.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3364bp|location=Sequence derived from alignment at sc0000094_pilon:1268566..1271929+ (Clytia hemisphaerica_ch_hm2_pilon)
tatataataaaatcctcaaaattctCTGCCTTTTATGGGGTTTGAATTAA
TGATTGgatattagaatttttttgcttatacaAAAGATATCCAATTTTCC
AGACAATtaaattacttttgaaaaaaaaaagataaacaacaTATGTGATT
TATCGTGactagaattaaaaaaaacaaaacaacatatttttatgattaaa
aaaaaaacatgtgatTTATCGTGACAAgaattttcaggattttactttat
acaaaaatctgtccgctttttttgggacacaccaCACTGTAAAATGTTTC
AGCGGGTCTAATTCTATGCGGTGAGGTGTTGCGCAATATCTATTGTGGGT
CTTTGTTCACAAGAAAAGATTAAATCATGACTAGCATGAATATGAAGCCT
ACAAACCCTGTGCAGAGAAGTGTTAATAGATGAAACTTTTTTAGCTTCCA
TGGATTCACCAACTTCGGTTGATTTCAACAACGATAATTCAAATGGTATG
TCTTTGTTCTGGTACTTTTTTCTGTATACGTTTTTAATAACTGGTTTAAG
TGAATTGCCCATCTGATATACATGATTTTTGTAATTCAGGCCCTTCTATA
TTAGAAATTTGAAATTGCTCTTGGATTGCCCTTTTCTATACTGTAacaat
cttgaaatattttcctCAATCAGactattttgatttcaatttgggttatt
tttatattattgtaGTGCTGATGCCATCAACTGAAATGACAAGTCTCTTT
TCCAATCCATCGATGGCTTCTTCATCAAAGGCTTCTTCTGAAGCACCCAA
ATCATCGGTTTCCAGCCTAAAACGTCACAAATCGTTCGCCAATCTATCCC
TGGCTTCTATTGCTGAATCAGCCACAGCACCAGTATCTCTACCCAACTTA
AATCGTCAGAAATCATTCGCCCTTCCATCAAAGGCTTCTATTGCTGAGTC
ATCCCAATCATCGGTATCTCTACCCAGCCTAAAACGTCAGAAATCTTTCG
CTGTATCAAAGACTTCTATCGCTGAATCAGCCACAGCACCGGTATTTCTA
CCCAGCCTAAATCATCAGAAATCGTTGACCAATACATCAAAAGCTTCTGC
TGAATCACACAAATCATCAGTATCTCTACCCAcccccaaaagtcaaaaat
CGTTTGCAAATCACTCAATGACTTCTAATGCTGAGTCACCCAATGCATCA
GCATCTCATTCTACCCCAAGAAATAATTCTATTGCACACAATTACAAGTT
TCCTATGGAAAATGGACGTAAGTTTTACAAGATACCTGGACTTTTTTGCT
GCGGTTGGCAGTGGTTGGGTGTCTATTAGGGAACAAGTTCATGTGATATT
TCAAtagacatttttgaaaatctttcagtATCTCCTTGTTATTTAGAATT
TACCAAGTCTTTTCCATGGGACTTAGCACTTGCTTAAAATTTCACCCAGA
GTCTTTCCCTGGAAGTCATATTTAACTTTTCCTCTTTCAGgttttcaaaa
gaaagttttgtctTTGTTGACCAAAATTCTGGAAGTTGTCAGGCAGTCAC
CATCTACCGGTCCATCATCATCTAGGCCGCAGGATTTACACCAGTTCACt
acaatttcagaattcatgGAACACGAGAATGATCCTGATCAGAACAAACA
TCTTGCTATGGTGAGAAAATTTGCATTCTTGGTGATGTTTCTATAGTACT
CTCAGcgtcaggtgcctaataaacggcccccccctgcttgttgatttttc
gatttttttccagtTACCAAAAGAAGAGTTCCtcgttttactctaaaaag
tcTAGTGGTTAAGTTTTCCCTGTGGCTGTAGTCTATTGACGAAACAGGGA
GTCCTGAAAGAAAGTCATGTGCCAGACCACGACTATCAGTTAGAAAATCC
TTTCTGTGCCAAACCATGACTATCAGATTTCAGATTTCTGACAGGTTCTG
AAGAAAACCTTGTCGTCTGATAAActctttaaaggaagaaatatttttgt
ctcaGATCGAATCATTGAAGTACATAGGTGgaaaagattgcaaagaagcc
ACTAAGAACTCCATGCTAAGGTAAGATTACAAAGAGGTTGATGCTGGTCA
AAAATAGTGGAGtatttgtaacatttttttaagtttactcTAGATTTGAG
GCTGACAATTGATTAGTAGGATTAGGCTGAATAAATTTCCTTTCTGGGGA
TATAAGTATCTTTTAATGAGGTTTACCAAAACTAAAAATGTGTTATTATG
AAGTTGGAACCAAAgttgatacatgttttttcttttataagcataacgtt
tataagcatacgcaggctcagtttttggcaCCGTAACAATGGCTccattg
tttgagaacaatagaatgctaagcataatgcgagcctgatataggggcag
acacttgcttataaaaaataacatgTAGGTTGACATGGTCATTTGTCTTC
TTTAGTCTATTCAATCCATAGAGAAATTCTCTCTTGGGTGCCTAAAATAA
CCCCACCCCGATTTTTTCTAACGTACCtctattttacttttatttaaagA
TCCCCATTATCAAAagaattctttcattttcttccaTAATAGCCTATTTT
TTCACTCTATTTCAGGAGTACAATATTAtgctaaaatctaaaatctatCT
TTTCAGAGTTATGACGTATAAACTTATGTCGGAATTTAACATGTGCGGCA
CGGTCAAGTCAAATTGTGAGCCGAAAAAGAAGATTTAAAGACACAAAAGT
TTTTCCAAGCAGTTCGCAGTGAGTACATTTTAATCTTGGTTATAGTTTTC
CAGGAAATAATGCCGGGTTTGATTGATTGTACTGTCACTTTACAAAATAT
CTCGAGGGATATAAAAGTCAAAACAtggaatgggctcttccagaaaatgt
tcgtacatagggggtggaggatatattgtccggggggtagtgaaaaatca
tcGAAATTTCCCTTGTCCGGGGGTGTAGCTCTGTCTGGAGGTAAACCTCG
AAttggagagcgtcaactgtagtatGCTTTTATCTATGCTTCGTTTTGTC
TCAATTCTTCATGTGCTGTTTACATTTGATTTATAGAAGCAGTCGTAGAC
TCTGGTAAGGGGACCGAGGATGACGTTTTACAATGCAATGATAGATGTGT
TGAAATTTGCTCCTGATAAACATGGTGGATCAGGCAGGAAAAGAAAAAGC
CCACCACCACAACACAGACCATCACCATCTCAGAATGAAGTCAGCTTGCC
ATTTCAAGATCAAGTCAGTCCACCCCTACCAAAACGATTTAAAATGTTCG
ATGACGACAGTGACAGTGAAAGTGACTAgactaaaatagaaatttttctt
tttcaagcatcgtt

Coding sequence (CDS) from alignment at sc0000094_pilon:1268566..1271929+

>MSTRG.12503.1.p1 ID=MSTRG.12503.1.p1|Name=MSTRG.12503.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2412bp|location=Sequence derived from alignment at sc0000094_pilon:1268566..1271929+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTCACCAACTTCGGTTGATTTCAACAACGATAATTCAAATGTGCT
GATGCCATCAACTGAAATGACAAGTCTCTTTTCCAATCCATCGATGGCTT
CTTCATCAAAGGCTTCTTCTGAAGCACCCAAATCATCGGTTTCCAGCCTA
AAACGTCACAAATCGTTCGCCAATCTATCCCTGGCTTCTATTGCTGAATC
AGCCACAGCACCAGTATCTCTACCCAACTTAAATCGTCAGAAATCATTCG
CCCTTCCATCAAAGGCTTCTATTGCTGAGTCATCCCAATCATCGGTATCT
CTACCCAGCCTAAAACGTCAGAAATCTTTCGCTGTATCAAAGACTTCTAT
CGCTGAATCAGCCACAGCACCGGTATTTCTACCCAGCCTAAATCATCAGA
AATCGTTGACCAATACATCAAAAGCTTCTGCTGAATCACACAAATCATCA
GTATCTCTACCCAcccccaaaagtcaaaaatCGTTTGCAAATCACTCAAT
GACTTCTAATGCTGAGTCACCCAATGCATCAGCATCTCATTCTACCCCAA
GAAATAATTCTATTGCACACAATTACAAGTTTCCTATGGAAAATGGACgt
tttcaaaagaaagttttgtctTTGTTGACCAAAATTCTGGAAGTTGTCAG
GCAGTCACCATCTACCGGTCCATCATCATCTAGGCCGCAGGATTTACACC
AGTTCACtacaatttcagaattcatgGAACACGAGAATGATCCTGATCAG
AACAAACATCTTGCTATGGTGAGAAAATTTGCATTCTTGGTGATGTTTCT
ATAGATGGATTCACCAACTTCGGTTGATTTCAACAACGATAATTCAAATG
TGCTGATGCCATCAACTGAAATGACAAGTCTCTTTTCCAATCCATCGATG
GCTTCTTCATCAAAGGCTTCTTCTGAAGCACCCAAATCATCGGTTTCCAG
CCTAAAACGTCACAAATCGTTCGCCAATCTATCCCTGGCTTCTATTGCTG
AATCAGCCACAGCACCAGTATCTCTACCCAACTTAAATCGTCAGAAATCA
TTCGCCCTTCCATCAAAGGCTTCTATTGCTGAGTCATCCCAATCATCGGT
ATCTCTACCCAGCCTAAAACGTCAGAAATCTTTCGCTGTATCAAAGACTT
CTATCGCTGAATCAGCCACAGCACCGGTATTTCTACCCAGCCTAAATCAT
CAGAAATCGTTGACCAATACATCAAAAGCTTCTGCTGAATCACACAAATC
ATCAGTATCTCTACCCAcccccaaaagtcaaaaatCGTTTGCAAATCACT
CAATGACTTCTAATGCTGAGTCACCCAATGCATCAGCATCTCATTCTACC
CCAAGAAATAATTCTATTGCACACAATTACAAGTTTCCTATGGAAAATGG
ACgttttcaaaagaaagttttgtctTTGTTGACCAAAATTCTGGAAGTTG
TCAGGCAGTCACCATCTACCGGTCCATCATCATCTAGGCCGCAGGATTTA
CACCAGTTCACtacaatttcagaattcatgGAACACGAGAATGATCCTGA
TCAGAACAAACATCTTGCTATGGTGAGAAAATTTGCATTCTTGGTGATGT
TTCTATAGATGGATTCACCAACTTCGGTTGATTTCAACAACGATAATTCA
AATGTGCTGATGCCATCAACTGAAATGACAAGTCTCTTTTCCAATCCATC
GATGGCTTCTTCATCAAAGGCTTCTTCTGAAGCACCCAAATCATCGGTTT
CCAGCCTAAAACGTCACAAATCGTTCGCCAATCTATCCCTGGCTTCTATT
GCTGAATCAGCCACAGCACCAGTATCTCTACCCAACTTAAATCGTCAGAA
ATCATTCGCCCTTCCATCAAAGGCTTCTATTGCTGAGTCATCCCAATCAT
CGGTATCTCTACCCAGCCTAAAACGTCAGAAATCTTTCGCTGTATCAAAG
ACTTCTATCGCTGAATCAGCCACAGCACCGGTATTTCTACCCAGCCTAAA
TCATCAGAAATCGTTGACCAATACATCAAAAGCTTCTGCTGAATCACACA
AATCATCAGTATCTCTACCCAcccccaaaagtcaaaaatCGTTTGCAAAT
CACTCAATGACTTCTAATGCTGAGTCACCCAATGCATCAGCATCTCATTC
TACCCCAAGAAATAATTCTATTGCACACAATTACAAGTTTCCTATGGAAA
ATGGACgttttcaaaagaaagttttgtctTTGTTGACCAAAATTCTGGAA
GTTGTCAGGCAGTCACCATCTACCGGTCCATCATCATCTAGGCCGCAGGA
TTTACACCAGTTCACtacaatttcagaattcatgGAACACGAGAATGATC
CTGATCAGAACAAACATCTTGCTATGGTGAGAAAATTTGCATTCTTGGTG
ATGTTTCTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12503MSTRG.12503Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12503.1.p1MSTRG.12503.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12503.1.p1.exon1MSTRG.12503.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12503.1.p1.exon2MSTRG.12503.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12503.1.p1.exon3MSTRG.12503.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12503.1.p1.exon4MSTRG.12503.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000094_pilongenomesc0000094_pilon:1268566..1271929 +