|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000094_pilon:586293..590683+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12465.1.p1 ID=MSTRG.12465.1.p1|Name=MSTRG.12465.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4391bp|location=Sequence derived from alignment at sc0000094_pilon:586293..590683+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGTCGaccaaaattgaataaaaaggtaAGGGTCACACCTTAGTAAAAAA
TTGCTAAGCGGGATCGCTTTTCTAGTCTTATTCGCATAAAAACTATTTCA
GGCTTTTTGCGTAGGATAACAACAACGATGATTAATGGTTTATTCAAGTT
TTGCTAAATAATTTCTCAAAGAATCTTTGAAAGTCTTTGATAAATAATTT
ATCAATGAAGATTTTTCTGAGAACTGAATGGTGAATTAAATAAAATCTAA
TTCTTTACACAATTACATGAAGGATAAAATTAGACATTAGGATTTCAcga
aaagttgacaaaaaatctCTGTTCATTTGTTCAAATTGAAATCTATGACC
TGGCATTTGTTTTTTGGTTAGCAAGGAATATTTCAAGAATGTCAAAAGAA
GAATTAGCAGCGAAGGAAGTTATTGGGGATGTTGAGCAAGAAAAAGGacc
attttcaaaagcatgGCAAAGCAGTGATGCCGTTTTGGTTGTCGAAGAAA
AAGAACTTCACGTTCATTCAATGATATTATCATTGGCTTCACCTTACTTC
GATAAAATGTTCAATGGAAGTTTCAAGGAATCGCAAACCAAACGAGTCAC
TTTGGAAGGGAAATCTTATGAAAGTGTGGAGCAGATGATAACAATCATTT
ATCCAAATATGGATTCAAAATTTGGTAAGGTTTTCAGAGAAAGAAAAggt
acaaaatattttttgcacgGTTTTCAGGTTCTCAAACTATCTGATAATCG
CAGATTGCACAAAGTTAAATCTAAATGATAGCGTTTTAAGTGACATTAAA
ATTATGTTCATACCCAAAAATTTTACTTGACATTTAGAATTCAAGACAAA
GCTTTGCAACGTGTGCTACCCAAAAGCTGGAAATAAAAGGATTTCACCGT
GTGGCGATTGTTCCGAAGCTAAAGGTAATTTTAAGTAAGActgatcaaat
caaatcaaaggtTCCTCAAAACCCTCACGATCTCAAGTGTTTCATAACTT
TGGTTTTAGTATTCTAAAGAATTATTAATATAATATTGTGCGTTGTTGta
ctatacacgttttttataagaacaaactatataaaaacaaatggctttta
tggccaaaatgttaatagcaattttaaggctttgcagactctaaaagatg
aaaatggacaaaaatgctcaaaaaatgctgaaattaagaacatgtttcaa
aaagttaagaaggcttcaaaatttttggatgttcttataaaaaaacgtgt
attcaaatTAATCAAACATCTTTCAATTGAATGCCAAAACACAATATTTC
TCGTAAACTGAAACAAATTATTTCCACCCATATATCAGGTATAAATTCAT
TATGCACACGTTGCGTGACATCTCAAGCTGAACTATGTCCGAAATGCAAG
AATTATTACAAGAAAGCAGGTAGGAATACTTAACTACAGTAGCTCTAAGT
TAATCCAATTCAAGGCTCTTTCTGACGTTTTTTAAATTACCAAAAAGaga
aagtacacgtttttttataaggaaccttaacttggctccgagcctggagt
tccttattttgtCAGAGAGTTTcagcttcaaagttccttatcgagttcct
tagtTACTTAGCTGTTAAGTTTGGATTTGCTAAGTGTGTAACTTCtgtaa
aagcattttttgtctttttgacagattgaaaggcgtttcagcaatatttt
tttatctttttatttaggtTGTTGTAAATGTGTGCAAGTTCAAATTGAAC
CCTTGCTGTTCCTGAACTTGATTTaacagcctgagcagttccttaataac
aattccttatttttcggtccattttcagcctcatgttccttataaacgtg
ttccttataaaaaaaaaaaacgtgtatcttaaAATCTATTTAAAAATGTT
GATTATGTTTCATCCGCTTTTAACACAATACAAAGACAATCCAAAACAGT
GCATTGATTATGACCATTTCTCTATATAACAGATGAAGGACGTTCACAAC
ACTTTGAAAGTTTGAGGAGCCTCTTCAAATTATCTGAAGAGTACATGGTA
CCCACATTGAGCAGTATCGTTGAAAATGAGGTTCTGTCGATGAGCAAGTC
CTTGGAGGGTTCATCCAATGAGTATGTAATGGAGTTGTTGGAGTTAGCAG
ACGGGCTGaattttaaagaatcaacagaTCTTTGCATCAAGTTTCTGATA
TCTCGAATCAATACGTACGCGTTTGGTGACGCAAAACGGGAAACTCTCTT
GCGAGACCTTATCAAGCATGAGAAGATCATGTTTAAAACAAGGAACAAGT
TACTTGGAATGATGGcacagaaaaaaatcggcgAAGTTGAAGAGAAGATG
AGACAACAactggaaaatgaaaacaaaagacaCAGAACGAGTTATTCTAA
ATGCGACCATAGTTATCCAGTATGGCCTTGCCAATCAGTAACTAAGGTTC
TTAGTGACTTAACAATGCTTGCTAAAGACATGACCGCATGAAACTGTTTT
GCAGATGCGTCCTCTTggaatttgttatattttacaaagattATAGATTG
TACAGTTTATAAAATTTGGTAAAAGTCTGAAGGTTTATTTGTAAAGGGCA
ATTCACTAGGGATCATCTTACAATTCCCGGAGTATAGGACtttttttGCT
AGTCACCTTTATAGTTACCTCCTATAGAATGGATTCCTTTTACCAGACTC
ACCTAACCTTACCCACTACTGAGAGGAACGAAACAAGGATGCCGCCGTGA
GCTAGAGTGAAAATAAAGACTCGCATGGCCTTACCTGTTTCTTGTTACAA
TTTGTATACaaaaaaaCAGTACCCAAGGGGGAGGGGCAATTTATTTTTCC
TTCAGACCCTAAGCCCAACGACAACCAAAATTCTGAGATcgaatatttca
tttttctttgcgTCTGTCATAATTTAAATCTATGTGCTTGACGTTCGTTT
TTGATTGCAATGAAACACTTTTAAAATGTCAACTCTGCGTATATATATTT
TTCCCTAAtttttctacatcctgactgactgaggacgacggtaaatctgC
ACTTTTACCATCCTCAATTtggcgggtcaaaactgcggtttattctaaat
cgcttcagtcatttaccgtcctcaaaagtgctcACTTTTACGTTTTCGAG
AAAGAAGGAAAGTTATTTTCCATACATCGTTGTTATAATCATTGAGAAAG
ACAGATTCATGTGACTGTGCTGTGTTACTTCTTAGATGACATGGATTTTT
AAATAGAGGATGTAGTAAAGTACGTGAAATCTTGCGGGGGTCTCAACCAA
CTGATTAATAACTGCATTTACcatagccatggtatatcaggaattatccA
ATGGTTGTTTTCAATAGGTTttacgttggttattggatttattaaccctc
ggtgatgatattcatcacctcgggttaataaatctcaataaccaactttt
acctattgaatataggTTTTATtctatacctgtaggcaaaaacaacCATT
ggataattcctgatataccatggctattataccgggtgtcccagaaagaA
GTCCCTctctttgaaatgaattttctcgagttctatcaacctttaaagaa
tcaattcttttgcattggaaagaggaaggataaacttaaattttgaaggg
gtcatttgtcaaattttgtcaattagatcaaaagttatcgtCTAAATtct
aaaacattacttttcaaaaaagtcgaaaaaaggcGGAAAATGAGGGTATC
AAATCATCAAAGAAAGCACttcttttatcaatttattaACGATCAAGTTT
TTCTATGTTGTCCTTTAAGGTGGACTACACAATAGACGGTAGCCTACCTT
TAAGTTGGTTTTTGCAGGAATTGTTAATCTTGTAAATACGtgctttggaa
aaaatggaaatacatttcctgatgaataaaaaaacattttcttacaataa
atttaataccctcatttttcgcgtttttcgacttttttgaaaagtaattt
tttagcatttagaccataactttttatctagttgactaaatttaacaaat
gctccctcaaaatttaagtttatccttcctttttccaatgcaaaaggatT
GATGCTTTCAAAGTTCATAAAACTTgagaaaattcatttcaaagaggggg
acttttttctgggacacccggtaccacggtagaaatttatttttcaaatt
ttgctttcaaagtttgattttttgttgtttatgtcaaagaaatttttact
aaaatgaATCTATAGTCAATTCCATGTACAAATTTTATGATttaagtaat
taagaaaatcattaaaaaagaaaaacatacgaacgttcgattatgggagt
gttttaagtGAAACGTTCGACTATTGACAtcattaatgttt Coding sequence (CDS) from alignment at sc0000094_pilon:586293..590683+ >MSTRG.12465.1.p1 ID=MSTRG.12465.1.p1|Name=MSTRG.12465.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3852bp|location=Sequence derived from alignment at sc0000094_pilon:586293..590683+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAAAAGAAGAATTAGCAGCGAAGGAAGTTATTGGGGATGTTGAGCA
AGAAAAAGGaccattttcaaaagcatgGCAAAGCAGTGATGCCGTTTTGG
TTGTCGAAGAAAAAGAACTTCACGTTCATTCAATGATATTATCATTGGCT
TCACCTTACTTCGATAAAATGTTCAATGGAAGTTTCAAGGAATCGCAAAC
CAAACGAGTCACTTTGGAAGGGAAATCTTATGAAAGTGTGGAGCAGATGA
TAACAATCATTTATCCAAATATGGATTCAAAATTTGAATTCAAGACAAAG
CTTTGCAACGTGTGCTACCCAAAAGCTGGAAATAAAAGGATTTCACCGTG
TGGCGATTGTTCCGAAGCTAAAGGTATAAATTCATTATGCACACGTTGCG
TGACATCTCAAGCTGAACTATGTCCGAAATGCAAGAATTATTACAAGAAA
GCAGATGAAGGACGTTCACAACACTTTGAAAGTTTGAGGAGCCTCTTCAA
ATTATCTGAAGAGTACATGGTACCCACATTGAGCAGTATCGTTGAAAATG
AGGTTCTGTCGATGAGCAAGTCCTTGGAGGGTTCATCCAATGAGTATGTA
ATGGAGTTGTTGGAGTTAGCAGACGGGCTGaattttaaagaatcaacaga
TCTTTGCATCAAGTTTCTGATATCTCGAATCAATACGTACGCGTTTGGTG
ACGCAAAACGGGAAACTCTCTTGCGAGACCTTATCAAGCATGAGAAGATC
ATGTTTAAAACAAGGAACAAGTTACTTGGAATGATGGcacagaaaaaaat
cggcgAAGTTGAAGAGAAGATGAGACAACAactggaaaatgaaaacaaaa
gacaCAGAACGAGTTATTCTAAATGCGACCATAGTTATCCAGTATGGCCT
TGCCAATCAGTAACTAAGGTTCTTAGTGACTTAACAATGCTTGCTAAAGA
CATGACCGCATGAATGTCAAAAGAAGAATTAGCAGCGAAGGAAGTTATTG
GGGATGTTGAGCAAGAAAAAGGaccattttcaaaagcatgGCAAAGCAGT
GATGCCGTTTTGGTTGTCGAAGAAAAAGAACTTCACGTTCATTCAATGAT
ATTATCATTGGCTTCACCTTACTTCGATAAAATGTTCAATGGAAGTTTCA
AGGAATCGCAAACCAAACGAGTCACTTTGGAAGGGAAATCTTATGAAAGT
GTGGAGCAGATGATAACAATCATTTATCCAAATATGGATTCAAAATTTGA
ATTCAAGACAAAGCTTTGCAACGTGTGCTACCCAAAAGCTGGAAATAAAA
GGATTTCACCGTGTGGCGATTGTTCCGAAGCTAAAGGTATAAATTCATTA
TGCACACGTTGCGTGACATCTCAAGCTGAACTATGTCCGAAATGCAAGAA
TTATTACAAGAAAGCAGATGAAGGACGTTCACAACACTTTGAAAGTTTGA
GGAGCCTCTTCAAATTATCTGAAGAGTACATGGTACCCACATTGAGCAGT
ATCGTTGAAAATGAGGTTCTGTCGATGAGCAAGTCCTTGGAGGGTTCATC
CAATGAGTATGTAATGGAGTTGTTGGAGTTAGCAGACGGGCTGaatttta
aagaatcaacagaTCTTTGCATCAAGTTTCTGATATCTCGAATCAATACG
TACGCGTTTGGTGACGCAAAACGGGAAACTCTCTTGCGAGACCTTATCAA
GCATGAGAAGATCATGTTTAAAACAAGGAACAAGTTACTTGGAATGATGG
cacagaaaaaaatcggcgAAGTTGAAGAGAAGATGAGACAACAactggaa
aatgaaaacaaaagacaCAGAACGAGTTATTCTAAATGCGACCATAGTTA
TCCAGTATGGCCTTGCCAATCAGTAACTAAGGTTCTTAGTGACTTAACAA
TGCTTGCTAAAGACATGACCGCATGAATGTCAAAAGAAGAATTAGCAGCG
AAGGAAGTTATTGGGGATGTTGAGCAAGAAAAAGGaccattttcaaaagc
atgGCAAAGCAGTGATGCCGTTTTGGTTGTCGAAGAAAAAGAACTTCACG
TTCATTCAATGATATTATCATTGGCTTCACCTTACTTCGATAAAATGTTC
AATGGAAGTTTCAAGGAATCGCAAACCAAACGAGTCACTTTGGAAGGGAA
ATCTTATGAAAGTGTGGAGCAGATGATAACAATCATTTATCCAAATATGG
ATTCAAAATTTGAATTCAAGACAAAGCTTTGCAACGTGTGCTACCCAAAA
GCTGGAAATAAAAGGATTTCACCGTGTGGCGATTGTTCCGAAGCTAAAGG
TATAAATTCATTATGCACACGTTGCGTGACATCTCAAGCTGAACTATGTC
CGAAATGCAAGAATTATTACAAGAAAGCAGATGAAGGACGTTCACAACAC
TTTGAAAGTTTGAGGAGCCTCTTCAAATTATCTGAAGAGTACATGGTACC
CACATTGAGCAGTATCGTTGAAAATGAGGTTCTGTCGATGAGCAAGTCCT
TGGAGGGTTCATCCAATGAGTATGTAATGGAGTTGTTGGAGTTAGCAGAC
GGGCTGaattttaaagaatcaacagaTCTTTGCATCAAGTTTCTGATATC
TCGAATCAATACGTACGCGTTTGGTGACGCAAAACGGGAAACTCTCTTGC
GAGACCTTATCAAGCATGAGAAGATCATGTTTAAAACAAGGAACAAGTTA
CTTGGAATGATGGcacagaaaaaaatcggcgAAGTTGAAGAGAAGATGAG
ACAACAactggaaaatgaaaacaaaagacaCAGAACGAGTTATTCTAAAT
GCGACCATAGTTATCCAGTATGGCCTTGCCAATCAGTAACTAAGGTTCTT
AGTGACTTAACAATGCTTGCTAAAGACATGACCGCATGAATGTCAAAAGA
AGAATTAGCAGCGAAGGAAGTTATTGGGGATGTTGAGCAAGAAAAAGGac
cattttcaaaagcatgGCAAAGCAGTGATGCCGTTTTGGTTGTCGAAGAA
AAAGAACTTCACGTTCATTCAATGATATTATCATTGGCTTCACCTTACTT
CGATAAAATGTTCAATGGAAGTTTCAAGGAATCGCAAACCAAACGAGTCA
CTTTGGAAGGGAAATCTTATGAAAGTGTGGAGCAGATGATAACAATCATT
TATCCAAATATGGATTCAAAATTTGAATTCAAGACAAAGCTTTGCAACGT
GTGCTACCCAAAAGCTGGAAATAAAAGGATTTCACCGTGTGGCGATTGTT
CCGAAGCTAAAGGTATAAATTCATTATGCACACGTTGCGTGACATCTCAA
GCTGAACTATGTCCGAAATGCAAGAATTATTACAAGAAAGCAGATGAAGG
ACGTTCACAACACTTTGAAAGTTTGAGGAGCCTCTTCAAATTATCTGAAG
AGTACATGGTACCCACATTGAGCAGTATCGTTGAAAATGAGGTTCTGTCG
ATGAGCAAGTCCTTGGAGGGTTCATCCAATGAGTATGTAATGGAGTTGTT
GGAGTTAGCAGACGGGCTGaattttaaagaatcaacagaTCTTTGCATCA
AGTTTCTGATATCTCGAATCAATACGTACGCGTTTGGTGACGCAAAACGG
GAAACTCTCTTGCGAGACCTTATCAAGCATGAGAAGATCATGTTTAAAAC
AAGGAACAAGTTACTTGGAATGATGGcacagaaaaaaatcggcgAAGTTG
AAGAGAAGATGAGACAACAactggaaaatgaaaacaaaagacaCAGAACG
AGTTATTCTAAATGCGACCATAGTTATCCAGTATGGCCTTGCCAATCAGT
AACTAAGGTTCTTAGTGACTTAACAATGCTTGCTAAAGACATGACCGCAT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000094_pilon | genome | sc0000094_pilon:586293..590683 + |
|
