MSTRG.12458.1.p1 (mRNA) -

Overview
NameMSTRG.12458.1.p1
Unique NameMSTRG.12458.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000094_pilon:495775..501080+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12458.1.p1 ID=MSTRG.12458.1.p1|Name=MSTRG.12458.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5306bp|location=Sequence derived from alignment at sc0000094_pilon:495775..501080+ (Clytia hemisphaerica_ch_hm2_pilon)
TAACCCAGCCcccttttttcttatctttaagTAAATTGCGGCATtccatt
taatttcatttttttcttccttttcagggtattcaaaaaaataacaatgT
aATACTGAATCGAAATCAAAGCAACGgattaaaaaattatgaataatTTA
GATGGaatattttttgctgatgtcagcacgGGAAGGTATAAAATGGGCAT
GGGATGAGACGGATGAGACATTTCAAACACAGACGACATCGAGCGCTTGT
TAGGTGAGGTAGTTTCCATACCCCACGCAACTTTCGCTGACGATAACAAC
AAATATTCTTGCAAATCTATTGGAGAATATTTAAAACAGCATTCAACCGC
AACATTTTGATGACTTTTCGCATCGACtttgtttcaatttcacaataaaa
aagtaagttTTCTCATTTCTTTTTACTGTTTTCTCGGAACATaaaatcta
attcaaattcaaattataatcttaacggaactaatttttgcgagaaCCGA
TTTTCGCGGAAGTTATTTTCGCGTGAGGATACTAAATTGGCGAAttttgc
ggaactaattttcaagccaaaaaacgcgaaaattaattctgcgaaaatta
gttcccgccaaaattagtccCCTTTAAGGTATAAAACGTGAATCGAGggg
caaaaaataataaacagtTTTTGCATGAACTTATCTTTGCGAGCagcaat
tttttaattcaaatccCTCAAGATTCAAGTACAAAAATTCATTATAAATC
CGATACATCTTAGAATATTTATTCCGgtttaccttattggaactaatttt
cacgggaaCTATTATAGtccgcggtcgaaaaaaaaaaatcggaaattttt
ttcaaatttttcgataaaattggaaaaaaatgtatttcacGGGTTCAAAA
ACGCTAAAATCAatttccgcgaaaattagttccagtAAGGTATTTGTCAG
GTGCTATTGCACCCACATCGAATCAAATGGTCACAGTATAGGGTAAAATC
GAGCTTGAAAAGTCTGttgattgttcaatttttttgaggGGATGAATTTA
GACGTTCCAGTCAGTAATTTCTAACTTCACTTTGTGGACTTTTATTGGAA
CAAACCTTACTATTcctttttttcctttgaaatgtCCTCTTGTTTTTCAT
CCGATAGGTATTTCTCCCCTTTCACATACATGATTTGAACCTAAAACCAA
ATTTGGCACCTTTTGGCACCTTTTGGCACTGTTCGGCTTTAAAGAAAGGA
GAGGTGAAATGGTAGAAATAATTAAAGTTGCCATCATAATTTGACCAGTT
TTATAGTATTTCGCCGTAAACATTTTCTGCAAATGAATGTACTCCGCCAA
AGCTTAACAACCTTTGGGAAGTTCAAGGAAATGTTAGAAAAAGAAAGAGT
GGTATTTAAAGAGAAATTTAGCTGGTTGAAATTGTGCCGAGGGATTATTT
TGGTAATCATTATGCTTTTCTTCCCTCTGAagtaatttttgtgtttttct
aaaaattaaatgcGCATTTTAAATCAAAGTCAAAGAGTtccacaaaaaaa
caaataaagttgCGGGCCATCTAATTTCGCCAGGGGTCCAAACACAAAGG
TCTTGAAATAGAGAATGAAGTCAATATCTACGTAATTCCCTACATGGGGC
CAATAGAAATGACtaagtgtttttaaaaacatttttgggcGGATCGGCTT
GTCACAAATTAATGTGGTTTAATTTCCTGATCATTTAATTCAACAGTTTC
AAAGTTAAAGGTCACACCTTTctccaaaaaagttgaaaaactaTGCGTCA
TTTGTTTTTAATTCCCAATGAATAACAAAGTAATTTTCAATAGGGGAAAC
CTGGTAACATTAATTATTTTCCGGGATATCAAAGATTTTGCGGTTATATA
TAATATCAtgataaaaatgacaattaaaattaaaatgatgAAGCAGGGGT
TGCTCATATTTGAATTTGGGGCTGGGGACACCTACAGTTCAAAATGAGTA
ATAACTTGaaaattagattattttttaatttttacaaactaaaaatagat
ttattactcaatttttgaagaagaagaaaattttgcggTGAATTTCCAAC
TGCTCCAAGTGTAATGACCCCATGGAGttttacacatgttttttctaatt
catattttgagcattttttttacttttcaaattttagattgttattcaat
tatatttttgattacCCAACCCTACTAGCatttatacgtttttttttata
agaacatccaaattttttgaagcctttggatgttgttaactttttgagtt
ttaagcctaaagatattcttaaacatgttcttattttgacaattttttga
gcatttttgcccatttttctaagaaccGACTGTTAAAGACTCGACAaaac
attaaaatgttcttaacttgttcttaacattttggccatcgaagccttat
gctcttattagtttgttcttataaaaaaacgtgtaattaccGTTAAAACT
ATTCGTGTCATGTCACTTGACTTGTGTTTATTCTCACAAAAAATAGTTCA
ATTTTATTCCTTAATTATTCTTTTAATGTGTACAATACCCTAGATTTCAT
TTATGCAAAATTCCTTCAATGAAATACCTTAGCCCATGAGCTGTCCTTTT
ATAAAAAGCTATGGCATTTCATTATTATTAGTTTTTCATAAATTGCAGGC
TGCCTCTGTACCTCTTTACaagaaacctttttaaattttactgtGGAGAA
TTATTAGTATCTCGACCAATCGAACGAGTTCTTTTAAAATACTTATGTGG
CCTTTCTTATAGAATAGGAGGAGTAGATCTCATAATAGAACTTTTAAATT
AATTTAAGGTCGTAAAGAATACCTACTAAACAATACAaaggtaataaaaa
taatagTTAATTATATCAAGGATAAATGGTgcactttttttaaacatcag
AGTTATTTTAAAAAAGCAGGAAATTTTGACTGAAATATTATAGATgagat
attttttatgaatgttTTAGTTTTAAAACTTCAGGAAACAGGAAGCGAAT
CCGAGggttgaattgaattttttagacattttattattttatattcaAGA
TTCTCTGATTGCTGTGTTGAGTTGCTTGATGCAATAAAGTTTTTAGTTGA
TCGAGGTTTGGTTTTGGTTTTATGGTGTGTGGCAAAGTCTTGATTATCTG
AAAGgctattcattattttttttgactcgGTGGTTGGAACAAAATACCTG
AGCATTTCATTAATAAGGAATTGACAATGTCCGATTTGTTTTACTTTGCA
tatttttggtgaaaactttggATATTAATATTGTACCAACCAGATTTGTC
ATTAgagatttgattttttgtgttagtggtcaattttgttttaaaaagta
agttcatgattctctaattcgaatataAAAGTTTcagtcccttgaagatc
gaactaGAGAGATCGAGTTGTAGATACGTAAATAttcaaaagacacgctg
attttgtccctgggacaaaagaagatttcatttttattggtagaaagaaa
aatggggtgagGCACGAGAAGGCGTTTTAGGTtgatgggatggagcatgt
cacattgcaccaacgcgataAAAACTTCTTGTGTCCCCAAGACTTAAGGG
TCCAGCCTTTCAGTACTTTTTCCGAGGCGAAAGGTGCTTGAAATTTGCTC
CATTTTACCATATATACCATCGTAAATTTAAGGATAAGTTAAACTTAAAA
CACTGGATTGAAAATTTAATAGTTTATTAAAGTCAGGTTACTCATGAGCT
TCTATAATCTTTAAAGCTTTGATTAATTAATCAGTGACTTAATGCCTTAT
AATACCTCTGTTAATGACTTTGTAATGGCCTATAATTGGATTAAGATAAA
gcaatagaaaaaaatgaatcgTTTACTTTATTAATCCCAAGCTATTATCT
CATCAATTAATTCAAGCCAAACAAAAAAGCGTTTCCTATGGCCCGCTACG
TGTGATTCGAACTAAAAATAGATGCGCTGTGTATAGGTGATGTGTGATTT
ACTCCTTACTCGGTATGGAAAAGTATgggaaattttgaaagtcattataa
aaagggGATCTAAAATTAGCTTTTGGGAACACCGCCTTCTATTTTGAGAA
GTTGCACCGCTTTTGAGTTTCCGATCTTGATTCAATGTGGGTGCAATAAG
ACCAGACATAATACACCGGAATAAATATTCTGAGATGTATCGGATTTATA
ATGAATTTTGCACTTGAGTCTTGAGGCATTTTGAATTTGGAGTCAAACAA
TGTGGGACTCATCTTGAAAATCATagtataaaattttaaagactGAGATT
GAGATTATATCAAGCCCGgaaagctggcacacaacattgtttcaacgttc
atctaatcaCACAACATGATATAACGTCCATGTAACATTaaagataaacg
ttgaaacaacgttgtgtaccagcttgGAGGGTAAGCTTGGTTTTAATCCA
TAACAAGAAAGGCGTGGGCAGTGAGAGTTAAATGTTTTTGACATTATTAA
GAGATTATTCACGCTTTGACTAACCGTCTTCTTTCATTCTTTTCTTCAGG
TATTGACTCAAGATGATTGGAGCTACTCAATCAACAATTTTGACACGATC
ATTCAACCTTCGAATGATCTTAATCACATCTATTTTGACAATCGGTCTAT
TCACCGAGATATCCGTCGCTAAACCGACAACAATAAACACCGACGAAGAT
TTAACGACGGCTTTATATCAAACCGATATCGGCCGACAAATGATTCGTCG
ACGCCAACGACGTAGCATAGAAGCGTGTTATGCTGAATGTAAAACGTCAG
AGAAAATTTGTTACGATAATGTAGAAAATGACTCATTCCAGGAGACCCTT
GTGTGCATGCAAGCCACAGATGGCTGTAAAAATGATTGCGACGCTTTGGC
TGGCAAAAGAAGGAGAAAACGTTTCGTAGATGCATTGAAAAGTTTACACA
GTCACCACTTGACGCTAGATTCTGAAATGCAATAATTGCTTACGTCATCA
TAtttgaactttttagaaatatatttttttgtatattgCGGCATTGTTAT
CCGAAACTTTTTAAAACGTTGATCCGGGctaatatgaaaataatttcatg
GGTGCCCACGCCCTTTGAACGCCTTTACCACCTTAAGTAATTTGGAATTT
CTGCAGTGCTAAGCCATAATTTTCTAAGTTGAATGAAATTTACTCAGGCT
GTGGCTTTGAGaagaaaaattgtttcattcaatttcaatatacaatttca
atatat

Coding sequence (CDS) from alignment at sc0000094_pilon:495775..501080+

>MSTRG.12458.1.p1 ID=MSTRG.12458.1.p1|Name=MSTRG.12458.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000094_pilon:495775..501080+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATTGGAGCTACTCAATCAACAATTTTGACACGATCATTCAACCTTCG
AATGATCTTAATCACATCTATTTTGACAATCGGTCTATTCACCGAGATAT
CCGTCGCTAAACCGACAACAATAAACACCGACGAAGATTTAACGACGGCT
TTATATCAAACCGATATCGGCCGACAAATGATTCGTCGACGCCAACGACG
TAGCATAGAAGCGTGTTATGCTGAATGTAAAACGTCAGAGAAAATTTGTT
ACGATAATGTAGAAAATGACTCATTCCAGGAGACCCTTGTGTGCATGCAA
GCCACAGATGGCTGTAAAAATGATTGCGACGCTTTGGCTGGCAAAAGAAG
GAGAAAACGTTTCGTAGATGCATTGAAAAGTTTACACAGTCACCACTTGA
CGCTAGATTCTGAAATGCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12458MSTRG.12458Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12458.1.p1MSTRG.12458.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12458.1.p1.exon1MSTRG.12458.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12458.1.p1.exon2MSTRG.12458.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000094_pilongenomesc0000094_pilon:495775..501080 +