MSTRG.12439.1.p1 (mRNA) -

Overview
NameMSTRG.12439.1.p1
Unique NameMSTRG.12439.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000094_pilon:154486..157219-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12439.1.p1 ID=MSTRG.12439.1.p1|Name=MSTRG.12439.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2734bp|location=Sequence derived from alignment at sc0000094_pilon:154486..157219- (Clytia hemisphaerica_ch_hm2_pilon)
TAAATTTGTTTTTCAGTTTAAAATCATTTCAAAAGTGACGATCAACACAA
AATGTTGAAATTTATCTCAGTGGTTTTGTTGGTGTTGGTGGTTAAGTATG
AAGCACTGCAATGCACGGGTGATTGTCAAAAACAACCAACTCCCCTCGAT
TGTAAAGGAGGTTTGACAATCTTGTTTGTTTATAACATAGTTTGTTTTGC
CGATTTTAAGCCTTTTTTGTTTAACCCTGCGAGCATATCCTTTTGGCCAA
AAAGCCAAAATAATATTTTTTGATAATTTTTGAAATATTTAATCAATTGA
CTTGCACTAAGCATAAATTGATATCTTTGATGAAAAATTCGGCATCATTG
ATGGCGTCATCGCCACCTGATTACCATTCTTTGAAATATATAACCTTTCG
AATGTAGAACCCCTCCAACTTTTTGAACTGTAAGTTTTTTTGCTAAGATT
TTGTGACTCCACGTGACATGTGTTTTTGAGGTACAGGATTGATTTTTTAT
GCCTTGCCCTTTGGATACTGTACCTAGTGATTGGAAAATGCTATTGACAA
GACATAAGCTTTCAAATTTCAAATCGGAAGAGCTCGAAGTCCAGTTCAAA
AAGTCCAAATGAAAGTCCCTAAAATGAACCCGTAAAGACTTAATTAGGTT
AATTTACCCTTATTGTAGTACATACCAATTTGAAAGGAAACGCACACCAA
TCACGAACAAAGACGAATTTGACAAAAAGAAAAAAGCCAAAAACAAAATA
AACGTCTCAAGATTTGGGTACCAAAAAAGGCCAAAACGATGACGTCCTTG
TTGTCCGGATTCCAGTACCAAAAAGGACCCAAATGATGACGTCCTCACCA
AAATTGACAAAATTTAATAAGGTTAATTTCAAGGCATTATTGTCAAGGTA
TCACATGCCAAATTGTCACCATTCCAACCAAAAAGGCCCAAATCGTTCGA
AAATTGACAAAGGTTAAATGCCAAATTTGAAAGGAAACAGACAAGCCAAT
CACGAAATATAGGTGCCTGAAAAAAAATCTGGAAATGACTTCATCAATTT
TAAAACAATTAACCGGTGACAAAAGCAAGACAATGGAGTGTCATTTTCTT
GTCTAAAGTACTCGTTACTTAGGTTTGGTACTCGTTACTTCCATTTGAGA
ACTCGTTACTTCTCGTTACTTCTCGTTACCTACTCGTTACTTCTCGTTAC
TTCTCTTTTTACTTCTTGTTACTTCTCGTTACTTCTTGTTACTTCTTGTT
CCTCGTTATAGTAACAACCGAACCCGTCTGTGAAATACCAACCGCTCACG
TGACTAAATCGAAATTTTGCACACTGTCTTAGATGGCCAATATCTATGAA
CATTTCAAGTCAAAAGCTCAAGTATTTCCTGAGTTCCGACAGGTGGTCAA
CGTTTATTTTACAGACCGGTCTGCAAAGTACCAAATACTCATTGGGAACG
AATTTTTCTGTTTTGACAAATCAGCCAAGAAAGCTCTGAAAAATCTGAAT
ACATATCTAAAATCAGCGAAGCTCGAAGTTTCAGAAAATTATGAAAATTA
TGAATTCAAGATTTATCGTTCAGCTTTTTTCATTATTTTCTAATTTTTTT
AAAGATTAACGATTATCTTTCCAACAAGGTCTTAATTTTAATCATATATT
TTTCCTTCAACAGCAATGTATCAAAATGTGAGGACTGCCATTTTTTTGAA
ACAGATTTAGAAAAAATTCATCGATCGTATCGTTGTAAAATTCACTCTTT
GCGAACTTAACGTGCTCTAGTTATGATTTTACAAAGAAAAAATTTTAACA
ATATTAATTGAATGATTTTACAAAGAAAAAATTTCAACAATATTAATTGA
ATGTTTAGTATGAAATTCTTCGATCTATTCCATCATTTCTCGTTCATCGA
TTTTTAGGATCGGTAGTCAAGCTACCCTGTGGGTTTTGTCAAGAGTGTGC
GAAGTCAGAGGGTGAGACGTGTGGCTGTATTGGCTGCAAGAAAACGGACA
ACTTTATCATCGATGAAAATACACCTCACGGTACGCTTGTGTTCGGTCGA
TGTGAAAAAGGCCTCAAATGTCAAATCAAGAGGGGTATCAAAGGAAAATG
TGGTATGTATTTGAAATGCTAGGAAATTTGGTGTTTTGTTTTAGTCTCCA
TTTTTAAGAGATGATGACATACTTACCACGATAGGGCTGTTTCTCTCAAG
TAGAAAAGAAAGTATTCAAGTTTTGCATAAGCATAACACTTTTGAGCATA
TCGAGACTAATATCAGGCTTTACACAAAATTGATTCTGGCTTTTGATTTC
TTTCTCAGTCAACTCTCTCCTTAATTTGAACCTCTATATTTCGATTATTT
CTGTAATTCGAATTCCTCTCAGCTTGAAAGTAGCATAAAAATACTCTCTA
TAATTCGAATATTTCTCTAGTTGAAGATCGAATTAGAGAGAGGTAACTGT
ATATCCCCACTATCGATAATTTCTTTCTTTTATAGTCAAGTTGCAGTGAA
TCTACAAAGCAAACCATGGTTTTGTCAACGAAATACAAAAATGAAAAGGA
TGATAGATTGCCTATATTTTTGATTTCAAAGAACGAAAATAGAAACATAT
TCACGTTTGTATATATTAAATTTTTAACTGATAAGCTCTATTTTAAACTT
CTTGACTTAAAGGTTTGGGTCGAGGATTGACATGTATATCATTTTATTGA
CTTTTGTTTGAAATACTTTTTGTTGAAATACTTA

Coding sequence (CDS) from alignment at sc0000094_pilon:154486..157219-

>MSTRG.12439.1.p1 ID=MSTRG.12439.1.p1|Name=MSTRG.12439.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000094_pilon:154486..157219- (Clytia hemisphaerica_ch_hm2_pilon)
TCAAGTTGCAGTGAGATCGGTAGTCAAGCTACCCTGTGGGTTTTGTCAAG
AGTGTGCGAAGTCAGAGGGTGAGACGTGTGGCTGTATTGGCTGCAAGAAA
ACGGACAACTTTATCATCGATGAAAATACACCTCACGGTACGCTTGTGTT
CGGTCGATGTGAAAAAGGCCTCAAATGTCAAATCAAGAGGGGTATCAAAG
GAAAATGTGATGTTGAAATTTATCTCAGTGGTTTTGTTGGTGTTGGTGGT
TAAGTATGAAGCACTGCAATGCACGGGTGATTGTCAAAAACAACCAACTC
CCCTCGATTGTAAAGGAGTCAAGTTGCAGTGAGATCGGTAGTCAAGCTAC
CCTGTGGGTTTTGTCAAGAGTGTGCGAAGTCAGAGGGTGAGACGTGTGGC
TGTATTGGCTGCAAGAAAACGGACAACTTTATCATCGATGAAAATACACC
TCACGGTACGCTTGTGTTCGGTCGATGTGAAAAAGGCCTCAAATGTCAAA
TCAAGAGGGGTATCAAAGGAAAATGTGATGTTGAAATTTATCTCAGTGGT
TTTGTTGGTGTTGGTGGTTAAGTATGAAGCACTGCAATGCACGGGTGATT
GTCAAAAACAACCAACTCCCCTCGATTGTAAAGGAGTCAAGTTGCAGTGA
GATCGGTAGTCAAGCTACCCTGTGGGTTTTGTCAAGAGTGTGCGAAGTCA
GAGGGTGAGACGTGTGGCTGTATTGGCTGCAAGAAAACGGACAACTTTAT
CATCGATGAAAATACACCTCACGGTACGCTTGTGTTCGGTCGATGTGAAA
AAGGCCTCAAATGTCAAATCAAGAGGGGTATCAAAGGAAAATGTGATGTT
GAAATTTATCTCAGTGGTTTTGTTGGTGTTGGTGGTTAAGTATGAAGCAC
TGCAATGCACGGGTGATTGTCAAAAACAACCAACTCCCCTCGATTGTAAA
GGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12439MSTRG.12439Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12439.1.p1MSTRG.12439.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12439.1.p1.exon3MSTRG.12439.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12439.1.p1.exon2MSTRG.12439.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12439.1.p1.exon1MSTRG.12439.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000094_pilongenomesc0000094_pilon:154486..157219 -