MSTRG.12417.1.p1 (mRNA) -

Overview
NameMSTRG.12417.1.p1
Unique NameMSTRG.12417.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000093_pilon:1142206..1144992+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12417.1.p1 ID=MSTRG.12417.1.p1|Name=MSTRG.12417.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2787bp|location=Sequence derived from alignment at sc0000093_pilon:1142206..1144992+ (Clytia hemisphaerica_ch_hm2_pilon)
AACTCACATTCCCAAGAATCATCTTTAATTAATCGTCATATCTCGCAAAG
TGAACTGTTTTTTCGTCCGACCCGTGCAAATGATGTTACTAGAGGTAAAG
CATTACGAATTATAGACTTTGTTTCCCGAATTCGTCCAGCTGAAGATGAG
AAAATCCTCTCTTACGATAATAACTGTAAACTTGCTCTGATCTTACAGGA
CACAAAACCTAAGCTTAATAGTGTCACTATGGAACAGTTTAACATTGCCA
ATCTTAGAATTTTTTACGAGTTATTATTTTCTGGGAAGCTCTCCACCCTT
CTTCATGTGCAGGAATACCTCTCCTATGCGATTAAGGTCTTGGAACTGGC
GACTAAGTATACATGGCAATCCGTGCTGCACTACGATGATGAGTTTCGTA
TCTTGAAGCATACTTATGGATTCTCATGGAGTACTGACCACAGTCACCTA
TATGAGGTTGTTCTCATACCTCGCTGGGCTGCGAAGCTACCTCGTGGGCT
TGGGCAAAGCACTGATACTTCCTCATCCAAAAGTGATTCTTCTTTGTTTG
GTCTTGCGGGTAACAATAAGGGTTTTGGTCCTGCCATTATGACACACCTC
TCTTCTGGATCAGAAATTTGTAGAATGTTTAATTCCAGGAAAGGATGTCA
GAAGTCCCCCTGCAGGTTTGCACATGCCTGTAACCGTAAGGTTGGCTCAC
AGGCTTGTGGGAAATCTCACCAGGGTTTCCTACATCCTGTGGGCGAGGGT
GACCCTCAATGACTCCTTTCCATAGAGCCTTCTCCATCTCCGCTTGACTC
TGCTATTTGGGACAAGGAGTTACTGAATGACCCTGACCGTCAGTTTTTAT
TTGATGGGGTGGTTAACGGTTTTCAATTGCTCCCAGCAGATGCAAAAATT
AGCCCTGCGGAAATGGAGAATTATAACTCTGCAGTTGGCCCTGGTTctaa
agaaaaagttgaagcCACTATTTTGGAAGAACTGTCGGCCGGAAATTATA
TTGTTACTTCTGAAAAGCCTGTTATTGTCAGTGCCCTTGGAGCAGTTCCA
AAGCCTGATTCAGAGGATCTCCGTTTGATCCATGACTGTTCTATGCCCCA
CGGTTTGGGCGTCAATTCTTACATAGATATTGAGAAGCAATCTTTTCAGA
CTCTAAATGATGCCTGTAGGCTGATAGGGAAAGGTTTCTTCATCGCTAAG
ATAGATTTGAGACACGCGTACAGATCTGTCTCAGTCCACCCAGCCAACCG
AGATGCTCTCGGGTTGAAGTGGAAATTTAGTGGGGACAAACACTACACGT
ATCTAAAAGACACACGTCTCCCCTTTGGCGCACGTAGTGCACCAggaatt
tttcattgtttgactCAGAGTGTAAGGCATATGATGCAGAGAAGAGGCTT
TCCTTTGATCATAGTATATCTTGACGATTTCTTGATCATTGGTAGGTCTC
AGCATGAATGCCAGGCTGCTTTTGTTGCACTCAGCTCCCTGCTAGTTTCT
CTAGGATTCACAATCAGCCCTTCCAAGGTTGTTCCACCATGTCAAAAATT
AGTGTTTCTAGGGGTTGAGATTGATACCACAACATTGACTCTCTCACTCC
CTGATAAGAAGCTAGGTGATCTGAAAGATGTCTTAATGTCTTTTCAATCC
CGAACTCGTGCCTCATAGAGACAGCTCCAGCAGCTTGCCGGGCGTCTCAA
CTGGGCCTGTAAAGTCATTTATGGTGGAAGAACCTTTCTACGTCGCATTT
TGGACCTTATGGGCTCCTTACAAAAACAGTCATCCAAGTGTCTGTTGAGT
GAGGAGTTCTTTCAAGATATTTCTTGGTGGTTGGACTTTCTTGAGATTTT
TAATGGCCAGTGTTCATTCCATGACACTAGGCCTGTTACTAACATCCACA
CAAATGCCTGTTCTTCAGGTATTGGTGCAGTGTTTGGAAATGACTGGTTC
TACTCTAACTTGTGGGTTGATGCGCCTGCCTTGGCAGGTTTGCACATCAA
CTACAAAGAGGCTCTTTGCATTGTGTTTGCCTTAGAACGTTGGGCTCTTT
TTCTCAGTAATAAGGTAGTCCATATCTATTGCGACAACACTGCTGCAGTG
GGCATGTTGAATAAGGGATCATCTCGCAACCCACTCATGATGACTTACCT
CAGGCGTCTGTTCTGGTGCTCTGCCACATACAACTTTCGCCTCAAAGTTT
ACCATGTTCCGGGGGTCCTGAATGTTGTTGCTGATCATGTCTCTCGATTG
CATGAACACAAACATCTTGCAGCTTTTCTTGAGTATCTTTGTGACAATTT
TGATCTGTTTGATCCTTCTGATGACATTGCCTGGCACATGTCTGAGAACT
GTTTCTTTTTCCTTCTTGGTTTATATGGGTCTGGCTCATGCCTTCGCTCT
GCCTTTTAGAGTTTGCGTCCTCGCTACTGGCAGAAGTGCAGTTATATCGT
GAAGCCACCTATGCTGTCAATACTCGCAAGGCCTACCGTGCTCACCGTAA
GGTCTATCTCCAGCTTTGCAATATGCTTGATATTCCGCCTGCTCCTGTTC
AATGTTCTCACCTCTGTATGTATGCTGCCTATTTGGCGCGGTTCCTGTTG
CCGCAGTCTGTTtgtatttatttgaattttgttggTCTTCTTCACCGGGA
AATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCTGTCCTCTGTGC
TCAAGGGTATTAAGCGTTCTAAGGGTGTCCCACCCGTCCCCAAGCTTCCC
ATCACCGTGGATATCCTCTCCTTCATTCATTCCCAAC

Coding sequence (CDS) from alignment at sc0000093_pilon:1142206..1144992+

>MSTRG.12417.1.p1 ID=MSTRG.12417.1.p1|Name=MSTRG.12417.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000093_pilon:1142206..1144992+ (Clytia hemisphaerica_ch_hm2_pilon)
AACTCACATTCCCAAGAATCATCTTTAATTAATCGTCATATCTCGCAAAG
TGAACTGTTTTTTCGTCCGACCCGTGCAAATGATGTTACTAGAGAGTTTG
CGTCCTCGCTACTGGCAGAAGTGCAGTTATATCGTGAAGCCACCTATGCT
GTCAATACTCGCAAGGCCTACCGTGCTCACCGTAAGGTCTATCTCCAGCT
TTGCAATATGCTTGATATTCCGCCTGCTCCTGTTCAATGTTCTCACCTCT
GTATGTATGCTGCCTATTTGGCGCGGTTCCTGTTGCCGCAGTCTGTTtgt
atttatttgaattttgttggTCTTCTTCACCGGGAAATGGGTTTCCCCAA
CCCTCTCCTTGACAACTGGTTCCTGTCCTCTGTGCTCAAGGGTATTAAGC
GTTCTAAGGGTGTCCCACCCGTCCCCAAGCTTCCCATCACCGTGGATATC
CTCTCCTTCATTCATTCCCAAAACTCACATTCCCAAGAATCATCTTTAAT
TAATCGTCATATCTCGCAAAGTGAACTGTTTTTTCGTCCGACCCGTGCAA
ATGATGTTACTAGAGAGTTTGCGTCCTCGCTACTGGCAGAAGTGCAGTTA
TATCGTGAAGCCACCTATGCTGTCAATACTCGCAAGGCCTACCGTGCTCA
CCGTAAGGTCTATCTCCAGCTTTGCAATATGCTTGATATTCCGCCTGCTC
CTGTTCAATGTTCTCACCTCTGTATGTATGCTGCCTATTTGGCGCGGTTC
CTGTTGCCGCAGTCTGTTtgtatttatttgaattttgttggTCTTCTTCA
CCGGGAAATGGGTTTCCCCAACCCTCTCCTTGACAACTGGTTCCTGTCCT
CTGTGCTCAAGGGTATTAAGCGTTCTAAGGGTGTCCCACCCGTCCCCAAG
CTTCCCATCACCGTGGATATCCTCTCCTTCATTCATTCCCAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12417MSTRG.12417Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12417.1.p1.exon1MSTRG.12417.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12417.1.p1.exon2MSTRG.12417.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12417.1.p1MSTRG.12417.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093_pilongenomesc0000093_pilon:1142206..1144992 +